Transcript — View — Lotus Base

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LotjaGi6g1v0110300.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0110300
Transcript ID	LotjaGi6g1v0110300.1
Lotus japonicus genome version	Gifu v1.2
Description	6,7-dimethyl-8-ribityllumazine synthase; TAIR: AT1G06980.1 6,7-dimethyl-8-ribityllumazine synthase; Swiss-Prot: sp\|Q6NLC8\|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr\|I3SGH7\|I3SGH7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0110300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:25361742..25362696) extracted from Lotus japonicus Gifu genome v1.2.

TCCACCTCTCTTCTCCTGTTCAAAGGAATTCATTCACCACCAAGATTCAACAAAAAGCTTCAGCTATATATCCGAACACA GAGATATATATATAGAGTTAATTTTTTTTTTTTCTGATCAGGATTATCCAAAACCTAGATCAGTTTTTTTTTCTCTACAA TATGGGTAACACTAACAGCTTAAGGTGTTGTTTGGCTTGTGTTCTTCCATGTGGGGCACTAGACTTGATCCGAATAGTGC ATTTGAATGGCGACGTGGACGAGATCACTCGTCGAATCACAGCTGAAGAGGTTCTCAAAGCCAACCCTAACCATGTTCTC AGCAAGCCGAGCTCTCAGGGTGTCGTTCGCCGGATTTTGATCCTCTCGCCGGAGACCGAGCTCAAGAGGGGCAGCATATA TTTCCTAATCCCAGCGTCCTCGCTGCCGCCGGAGAAGAGACGGAGCGGAAAATATATCGGTGACAGTGATCTCAACAAAA AAGCCATCAATTACAAGGGTGTTGATGATGGTAATCATGAACAACAACAACAACAACATAACTTGGTTTCAAATAAAGAA AAGAAATCGTCTCGCCGGAAAGGTCATCATCGTGTTGGAATATGGAGGCCTCATTTAGAGAGCATTTCTGAAGATTTGTA ACTTTTGTGTGTTACCGGCGTGAGGAAAAAAAACTTGGTTCTATAATTGATGAAAAATAGCAACAGGACCTTTTTTATTT CTCTCTTTGTTTGATAACTGTATGTGAGTATTTGATTTTGTGGATAAAAAATGATCACCTGGCTTTCCGATAATTGTTTC AATTTTCGTTTTATTAGTTTGCGGATTTCCGTGGTTGAATTTAATTTCACCAAATCTATATATGTTTGCTTTCTTACAAA GAAAGAGAAAAGAGCAAGAGTGTGAATATTTGAAGTTAATTTGTACCAAGCAATTCACAACCTCAAGTTGCATGC

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0110300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTAACACTAACAGCTTAAGGTGTTGTTTGGCTTGTGTTCTTCCATGTGGGGCACTAGACTTGATCCGAATAGTGCA TTTGAATGGCGACGTGGACGAGATCACTCGTCGAATCACAGCTGAAGAGGTTCTCAAAGCCAACCCTAACCATGTTCTCA GCAAGCCGAGCTCTCAGGGTGTCGTTCGCCGGATTTTGATCCTCTCGCCGGAGACCGAGCTCAAGAGGGGCAGCATATAT TTCCTAATCCCAGCGTCCTCGCTGCCGCCGGAGAAGAGACGGAGCGGAAAATATATCGGTGACAGTGATCTCAACAAAAA AGCCATCAATTACAAGGGTGTTGATGATGGTAATCATGAACAACAACAACAACAACATAACTTGGTTTCAAATAAAGAAA AGAAATCGTCTCGCCGGAAAGGTCATCATCGTGTTGGAATATGGAGGCCTCATTTAGAGAGCATTTCTGAAGATTTGTAA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0110300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGNTNSLRCCLACVLPCGALDLIRIVHLNGDVDEITRRITAEEVLKANPNHVLSKPSSQGVVRRILILSPETELKRGSIY FLIPASSLPPEKRRSGKYIGDSDLNKKAINYKGVDDGNHEQQQQQHNLVSNKEKKSSRRKGHHRVGIWRPHLESISEDL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SignalP_EUK	SignalP-noTM View details on SignalP-noTM Search for proteins/transripts with this domain	1	19	19	-	–
Pfam	PF14009 View details on PF14009 Search for proteins/transripts with this domain View external data on PF14009	1	157	157	1.5E-32	IPR025322 Show description in modal box View details on IPR025322 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR33052:SF26 View details on PTHR33052:SF26 Search for proteins/transripts with this domain View external data on PTHR33052:SF26	6	158	153	2.1E-54	–
PANTHER	PTHR33052 View details on PTHR33052 Search for proteins/transripts with this domain View external data on PTHR33052	6	158	153	2.1E-54	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	109	147	39	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	116	130	15	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0110300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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