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LotjaGi6g1v0122900.1

Overview

Field Value
Gene ID LotjaGi6g1v0122900
Transcript ID LotjaGi6g1v0122900.1
Lotus japonicus genome version Gifu v1.2
Description Gibberellin 2-beta-dioxygenase; TAIR: AT5G58660.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8; TrEMBL-Plants: tr|K7MQ88|K7MQ88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0122900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:31407842..31412754) extracted from Lotus japonicus Gifu genome v1.2.

GATAGCCACAGCCCAGCAACTTCCATTTCATAATCCATTCTCATTTCACAACAACATGGAGTCCTACCCTCCCGTTTTCC GCTGCCAACAGACCACAACCTTACACCCAGATGACACTTCCCATGACCCAATTCATTATCCGGATCTAGTACCAGTCATA GATCTTCAAAGCTTAAACCATGAAGATGATGCCAATAACATCATCAATAAGAAGATTCTAGAGGAGGCTTGTGAAGATTG GGGTCTTTTCCGTTTGGTCAACCATGGGGTTCCACCAACACTTTTGAAGCAGCTTCAGGAGCTGGCTAGAGAGCTGTTCA CATTGCCTTTTGAGTCCAAAAAGGCGGCGTACAGCGGCGCCGCCCCTGTCACATACTTTTGGGGCACTGCTCTAGTAACA CAATCTGGGACAGCTGTAACAAGAGACCCTCAAAATATCAATTGGGTTGAAGGTTTCAGTGTGCCGTTGAATCACCTCTC TAGTTTCCATCCTCAGCTTCCAACGCTTGAGTCCATCAAGTAAGTACACAACCAACTTTTTTTAAAAAACTAAATTGATT AAAAATCAGAAAACAACAAAGCCAGTAGAGATCATCATTCACAAAATAAACTGCAGCTAAAGGAACCTCTCTTCCACCTG AAAAGTGGCAGTGTTCCTCAAAAGAAAATCTGCAACTGCGCGCATATCACTAGAGCGTCTTAAAAATGATAAACATTTAA AGTCAAAATTAATATTAGTACACAGCCAACTTGAGTACTACTAATATTAGTTTTATTTGTCTTCATCACTTTATTTTTAA AGTATATGCAATTGTTTCCCTTGTTTTTTTCTGTTTTTGTTTATTGGCCATCCTCTGTGTCTGTTCTTTCGGATTTTGTG TGGAAAATGGTCCTTGGTTTGTGGGGTGAATTATTTTGTCGTTGGTGGAGTCGTCTCCTTTATGAGAACGTGACAATGTT TTAGATAATTGTAAAATAGAATAGTTTTGATTTGCTTCTGAAAAAAAAGACTAGTTTTGATTTTAGTCCCCAATTACCGG GGCTGCCTAAAGGTAAATTCATCTAAATAAGCGCCTTAGACCTCTAATTCTTTTTTACCAAGTAAAAAATGCCTCAATTT GTTTTTACTAAGTCATAGAGACCTCAATTGAAAAAAGCAAACATTAATACTAAATCAAATATGTCTCACTTTAAAATTTG CTTTAGTCTTTATTTAGTGTTGGACCGGGCCAGTCACTGTAAAGTTGTAATTTAGTCCTTCTATTTTATGAAACGGCCTG GTCAAAGTGTGAGCTTCGATCACATTGTCACGTGTCTTTGCCGGTCTTATGTGACACCTAGTTAAAGATTTAGAAAATTT AAGTTGCAGATATGTAACGAACACATATGAATTGATAACACGAAAATATAATATATTATTATTAACAATTTAAACATTTT TTTTGACGTATATTAACAATTTAAACATACATACGTCATATTTGTTCTATACTAATTTGTATGGAAAGATATGACAGATT GATGGAACTTTCTATTGTGGGGAGAAATATTAACACTAAATGGATTTTTGGAGGTTTTTAGAGGGAAGGGATTTCAGGGC ATATTTTTATTTCTGTTTATGCTAATTAATTATTTAATAGATCCGTCAAAAAAAATTTATTTAATAGATTATTTTAAGAA TCGTTAAATTAGATACTATTTATTTGAAAATTGAAAAATATGCTCTTCGGAGTTTTTTCCTAAAAAAAAAACCAACTCGC AAATAATCTTAAAAAAACCAACTGCATTTATCCTACATCAATGTGTTTCATTTTTATTTGGTACATTGAAAAGATAAATT GTAACTGTCAAGAATCGATTATTGGACCTTCCCCTACCCAACACATATGTTCTCAGCTCCTACCACTCGAGTTATCTTAC GGGGACATCGATGTGTTTCATTTTATAAATTTAAATTTAAATCCCACATCTACTTTAAATCAAAATTAATTAACTAATTA AAAAATTGTGAAAAATCATATAATCCTTAACTAACGAAACTAATTTTAATTTTTAAATTAGTAAAATAAAATTCAATTTC AATTCCAAAATAAGGGTATTCTCGTTAAAAAATAATTAATGCACCACAAACTTCAAATTGGTTTTTGTAAAAAGCTATAT ATATCTCCAATTTGGCTCTTATATTAAAGACCAAGAGGACTATTTTTTAATTGACATGACATAGTTTCATTGGTTGAGAT AGAAAATGAGACATTATGTAGGGATAAAAAATCGTCATTCCTCCTCTAACCTCAAACATACCCAAAAGACCCTCATGTTC TCAGAATGCTACTCAAAAGCCCTTATCCCCAACTCCTACCCAACTGTTCCAATCTTGGTTTCTGCACGACATCAACAACA CTCGACGTCATATAGTTTTATGATAATTATTTAAATATAAGTTATATCATAATGAAAGATAAGAAGCATCGCTTTCTCAC CCCTAGCAAATCATGTTCTTCGAATTTCACTCAAAACCCCCTCCCATTCCCCTAAACCATCTCCTACACTCCCCCTCCAC CCCTTCCCCTCACTCACCCTTTTCCCCAATTCCTTCCCAACCGTTCGAATCTTGGTTTGTGCACAACATCAATAACTCTT GATGTCATGGAGGAGAAAGCTAGTGACAATGTGGGGTTGCTAGGGGCGAGAAAGCGATTCTTCTTATCTTTCATTATGAT ATAACTTATATTTAAATAATTATCATAAAACTATATTTTAATTATTTTAAAAAAGAATCGGATGCATTACATGGTCAAAC ACTAGTTAAGCACTTTGTAATGCAAAATGAAACTATATACGAGTTCTCTACTGCTTGTGATCGTAATCAATTTAGATACT ATTAGTCTCATAATTGGCTAGAGAGTCGCTTTTCATAGAGGAATCTAGTTTTCTTTTATTTTTACGAATTTTAATTTGGT GGTTGATTGACTTGTTAGTGTTGCGTTGCTTTTTTTTGGGAATCATGTTTTTTCTTCCCCTTTGGGCGGTTTCCACTGTT TTCTTAGTCTCAGATGATTAGTCTTCTTGGCCTTTTGAGCATGGTGCATAGTTTGTTTTTTCTTCTAGGAATGTAAAAAA ATAAAATAAAACTAAAGTCATAGTATATTCATGTTTTTGCGTTTGTCAATTTGAAGCCAATCTTTTAATTTGAGCTGATT TAGTGTATTTTTCCATGCCTTGGAAGACTATTGCTGATGGATTATGAAACCCACCTCTCAAGAATTGCTACAACTTTATT CGAGGCTATGGCAAAGAACCTTGACCTGAATCTTGAAACCTCAAAGTCATATTTATCAGTAGACACCGGAATGGTTCGTG TGTATCGGTACCCACATGGCTCTGTTGGTTGGGGAATGGAAGTGCATACGGATAGCTCAATCTTGTCGATTCTCAACCAA GACGACCAAGTCAGTGGACTTGAGGTGCTCAAAGATGATCGCTGGCTAATTGTCAAACCCATTTCCAACACATTGATTGT CAACCTTGGAGACATGATGCAGGTAGGACCATACATATTCTTCTCTTTTTTATGTTTCTGTATACGCTTTAGATTATGTT TGAGGACTCAAATTTCTGTTTCCTTTTCTATCTCCGTTAATGAAATTATGACATGTAATTTAAAAAATAACTATAAGGTT ATAATTGTCATACTATTAAGTAATAACATGATTTAATTAGTCGGGTAGAGAAGAAAACACCCAATAGAGACCGGAGATCT CCATCTTATATTTGGATCGATATGGATCAAAAAGTATTTACCGAAGCTTATTTACTGTTTTTTCAAGTAGATAAGCTTCA ATAAGTTTTCTTTAGTATGTATTTAAATAAACTTGATTGTTTTTTGTGCTACAAAAGGACGGATCAAATTAATTTGATAA TGTAATTTTACGAGTTTAATTTGAATGCACTGTCAACATTGACATTCAATCATCTAATGTCACATATTCAATATTCATTT TTATTTTACTTCAATTAAGAGTGTATTTCTTATATATCAACCAACTACATTGAATGTCTGCGGTATTGCATACAAATTAA ATAATAATTTGAATTACGGAGGAGAGTTTCTTTTCTTTTTTATGCTTCGAAAAGAAAACAAAACAGAAACAAAAAACTAA GGCACTCCTAGGAAAATGCTAGTAATACTCACTTTAGCTTTTTTTTTTCTACATTTTATTATTTATTAGTTGAAATTCAT GTGAGTCTGCTAAAAATATGTGTCATATTTCAAATTTAGTGGAGTTCACATAAATTTCAACTGATAAATGACAAACCATA AAAAAAATATTAAAATGAGTGTTGCTACCACTTCTCATTAATTTTTTAATCTAATTAAATAAGTAGTTTCTCAGTTTCTC ATATCCAATTTCTTCAATATAAATTGTGTTTTGAAGTTATATATTCTAATTCACAGTTGGTCTGTTTTGGTTTTAGGCAA TTAGTAATGACAGATACAAGAGTGTGTCACACAGAGTGAAGGTAAGCAAAAATAATGATCGAATCTCAATATGCTACTTT GTGTTCCCTGGTGAAGATGTTGTGATTGAGAGTTCAAAGTACAAGCCCTTCACTTACAATGAGTTCAGTGCACAAGTGCA GCAAGACAAGAAGGCCCTTGGCTATAAAGTTGGGCTTGCAAGGTTTAGTCAGAAACAGGATTGTTAAGCTTTATTAGCTC CGATTCAAAAAATTGATCTCAGTCTTATTTCTAATTTTATTATATTACGTGTACTATGAAACAATACATATAAATTGGGA TTTTTTTGCTCTATTTCTTATTCACACATCATATTTATCATTTTTTTATCTCTTTCTAATAGTCTACATCTTTATTAAAA ATTAAAATATTCGCGCAAGACCGAAAAGTTAGT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0122900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTCCTACCCTCCCGTTTTCCGCTGCCAACAGACCACAACCTTACACCCAGATGACACTTCCCATGACCCAATTCA TTATCCGGATCTAGTACCAGTCATAGATCTTCAAAGCTTAAACCATGAAGATGATGCCAATAACATCATCAATAAGAAGA TTCTAGAGGAGGCTTGTGAAGATTGGGGTCTTTTCCGTTTGGTCAACCATGGGGTTCCACCAACACTTTTGAAGCAGCTT CAGGAGCTGGCTAGAGAGCTGTTCACATTGCCTTTTGAGTCCAAAAAGGCGGCGTACAGCGGCGCCGCCCCTGTCACATA CTTTTGGGGCACTGCTCTAGTAACACAATCTGGGACAGCTGTAACAAGAGACCCTCAAAATATCAATTGGGTTGAAGGTT TCAGTGTGCCGTTGAATCACCTCTCTAGTTTCCATCCTCAGCTTCCAACGCTTGAGTCCATCAAACTATTGCTGATGGAT TATGAAACCCACCTCTCAAGAATTGCTACAACTTTATTCGAGGCTATGGCAAAGAACCTTGACCTGAATCTTGAAACCTC AAAGTCATATTTATCAGTAGACACCGGAATGGTTCGTGTGTATCGGTACCCACATGGCTCTGTTGGTTGGGGAATGGAAG TGCATACGGATAGCTCAATCTTGTCGATTCTCAACCAAGACGACCAAGTCAGTGGACTTGAGGTGCTCAAAGATGATCGC TGGCTAATTGTCAAACCCATTTCCAACACATTGATTGTCAACCTTGGAGACATGATGCAGGCAATTAGTAATGACAGATA CAAGAGTGTGTCACACAGAGTGAAGGTAAGCAAAAATAATGATCGAATCTCAATATGCTACTTTGTGTTCCCTGGTGAAG ATGTTGTGATTGAGAGTTCAAAGTACAAGCCCTTCACTTACAATGAGTTCAGTGCACAAGTGCAGCAAGACAAGAAGGCC CTTGGCTATAAAGTTGGGCTTGCAAGGTTTAGTCAGAAACAGGATTGTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0122900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MESYPPVFRCQQTTTLHPDDTSHDPIHYPDLVPVIDLQSLNHEDDANNIINKKILEEACEDWGLFRLVNHGVPPTLLKQL QELARELFTLPFESKKAAYSGAAPVTYFWGTALVTQSGTAVTRDPQNINWVEGFSVPLNHLSSFHPQLPTLESIKLLLMD YETHLSRIATTLFEAMAKNLDLNLETSKSYLSVDTGMVRVYRYPHGSVGWGMEVHTDSSILSILNQDDQVSGLEVLKDDR WLIVKPISNTLIVNLGDMMQAISNDRYKSVSHRVKVSKNNDRISICYFVFPGEDVVIESSKYKPFTYNEFSAQVQQDKKA LGYKVGLARFSQKQDC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10209:SF570
16 320 305 6.1E-101 –
PANTHER
PTHR10209
16 320 305 6.1E-101 –
SUPERFAMILY
SSF51197
18 315 298 3.5E-69 –
Gene3D
G3DSA:2.60.120.330
30 330 301 1.3E-68
IPR027443
Pfam
PF14226
32 136 105 1.4E-17
IPR026992
PRINTS
PR00682
55 72 18 6.8E-6 –
ProSiteProfiles
PS51471
194 291 98 12.575
IPR005123
Pfam
PF03171
200 291 92 1.1E-22
IPR005123
PRINTS
PR00682
251 277 27 6.8E-6 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0122900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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