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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0124100 |
| Transcript ID | LotjaGi6g1v0124100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT3G13130.1 transmembrane protein; Swiss-Prot: sp|Q39QP7|LON_GEOMG Lon protease; TrEMBL-Plants: tr|I1JJJ0|I1JJJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0124100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:31698277..31699354) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTAGGAAGAAAAAGAAAAAAAAAAAGAATAGGGTTACCCCACTCACCACTATATATAAGGAGCCCTTCATGGCTTTG ATATACCATTACCAAACACCCCATCTAACATCACCTTTCATATACCAACCTCTCCCTAGTTCCATTCACTTTATTCAGTG GAGACTATGGGTGAACTCAAATACCAAAACATATCAGTGAAGCTTGCCCAGTTATTCATTTCAGTATCTGTGTGTTCCTT CATCTTTTCACCCTCTTCCTTGCTTGTTTTCCTCCATTACTTCAAATTCTATTTCTCTACACTCCCTTCCCAACTCTATT CCCACAACATAGACAAGAACTCCATGTTCCTCCTTTGCAATGGCCTCCTTGTCTTTGTTGGTATTACCAAATCTTTCTCA CGGTCTAATGATGATGATGATAAGCCTTCTGAGTTAGAAGGTTTATCAATATCATCATCATCATCAAAGTATATTGAAGA TGGTTCACAATCGTATGTCCTTGATGTTGAGGTCAATGAGCCAATTTTGGAGGAAGGAGAAATTTTTCAAACTGGTGAGC CTGATGAGCAAAACATTGTAGCAGAGCAAGCAATAGAAATTGAAAACTTTGTTGAAGAGGAAGGAGAAAGAAACATTGAA AAAGTGATTTTTGTAGATGAAGAACAAGGAAAAGAAAGTGTCCAATTTAATTTGGAAGAAGAGGAAATGGTATTGGATGA AGAAACTGAACTATTTGATGCAGTTGATGAAGAGGAAGGTAAAGGGTCAGAAAATGAATATTTTCTGATTGAAGAGGAAA ATGATGTAGAAGAAGAAGAAAGCAATATGTTAAGCACAGAGGAGTTGAATAAAAAATTCGAAGATTTCATTAGAAAGATG AGGGAAGATCTGAGAATTGAAGCTAGAAGGCAATTAGTCATGGTTTAATCATGTAACAACCATGATTTTTTTGTTTCCCC TCTATTTTTTTCTTTTGGTCCTGTTTCTTAGGATTCGGCTTTTTCTTTTTTTTCTTGTATCTAGCTTTATGTATGATAAT CCCCTGAAATTTTATGAAACTATTTCTCTACTTTTTCC
CDS sequence (LotjaGi6g1v0124100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAACTCAAATACCAAAACATATCAGTGAAGCTTGCCCAGTTATTCATTTCAGTATCTGTGTGTTCCTTCATCTT TTCACCCTCTTCCTTGCTTGTTTTCCTCCATTACTTCAAATTCTATTTCTCTACACTCCCTTCCCAACTCTATTCCCACA ACATAGACAAGAACTCCATGTTCCTCCTTTGCAATGGCCTCCTTGTCTTTGTTGGTATTACCAAATCTTTCTCACGGTCT AATGATGATGATGATAAGCCTTCTGAGTTAGAAGGTTTATCAATATCATCATCATCATCAAAGTATATTGAAGATGGTTC ACAATCGTATGTCCTTGATGTTGAGGTCAATGAGCCAATTTTGGAGGAAGGAGAAATTTTTCAAACTGGTGAGCCTGATG AGCAAAACATTGTAGCAGAGCAAGCAATAGAAATTGAAAACTTTGTTGAAGAGGAAGGAGAAAGAAACATTGAAAAAGTG ATTTTTGTAGATGAAGAACAAGGAAAAGAAAGTGTCCAATTTAATTTGGAAGAAGAGGAAATGGTATTGGATGAAGAAAC TGAACTATTTGATGCAGTTGATGAAGAGGAAGGTAAAGGGTCAGAAAATGAATATTTTCTGATTGAAGAGGAAAATGATG TAGAAGAAGAAGAAAGCAATATGTTAAGCACAGAGGAGTTGAATAAAAAATTCGAAGATTTCATTAGAAAGATGAGGGAA GATCTGAGAATTGAAGCTAGAAGGCAATTAGTCATGGTTTAA
Protein sequence (LotjaGi6g1v0124100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELKYQNISVKLAQLFISVSVCSFIFSPSSLLVFLHYFKFYFSTLPSQLYSHNIDKNSMFLLCNGLLVFVGITKSFSRS NDDDDKPSELEGLSISSSSSKYIEDGSQSYVLDVEVNEPILEEGEIFQTGEPDEQNIVAEQAIEIENFVEEEGERNIEKV IFVDEEQGKESVQFNLEEEEMVLDEETELFDAVDEEEGKGSENEYFLIEEENDVEEEESNMLSTEELNKKFEDFIRKMRE DLRIEARRQLVMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 4 | 253 | 250 | 4.4E-97 | – | |
| PANTHER | 4 | 253 | 250 | 4.4E-97 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 16 | 39 | 24 | - | – | |
| Phobius | 40 | 58 | 19 | - | – | |
| Phobius | 59 | 77 | 19 | - | – | |
| Phobius | 78 | 253 | 176 | - | – | |
| Coils | 207 | 227 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0124100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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