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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0127700 |
Transcript ID | LotjaGi6g1v0127700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/threonine-protein phosphatase 7 long form like; TAIR: AT1G17930.1 Aminotransferase-like, plant mobile domain family protein; Swiss-Prot: sp|Q9LMT7|MAIN_ARATH Protein MAINTENANCE OF MERISTEMS; TrEMBL-Plants: tr|A0A0L9UUK1|A0A0L9UUK1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0127700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:33122033..33123293) extracted from Lotus japonicus Gifu genome v1.2.
GGGGGACGCTATGAGGATGCTGCTAGGATCTGGCTGGTGAACCAGCTTGGTGCCACCCTCTTTGCCAGCAAGAGTGGTGG TTACCACACTACTATCTACTGGATCGAGATGCTTGAGGACCTCGGTCGCGTGTCGGAGTACGCGTGGGGTGCGATTGCGC TGGCTTCGTTGTACGAACAGCTGAGTCGTGCTTCCCGCAGGAAGACAGCGCAGATCGGTGGGTTCACCTCCCTCGTGTTG TCATGGGCGTATGAGTACATATCCAGCAGCGTCATTATCAGGACGGAGGTCCCCGGCTACACACAGGACCAGCCTAGGGC GCAGCGGTGGTCCACGTCTCGGATCGCGCATTCCGGACTCGATGAGAGACGGGTCATGCTCGATGAGCTTACAGTGGATG ATATCACATGGACCCCTTTTGAGGACCATCGAGATGTTCGACCGCGGGATCCCAGGGCCCTCTATTCCGGCTACATCCGG ACACCTTACGGCCGGTCTGTGAGCCTACATCTACCAGAGCGGGTTATGCGCCAGTTTGGCTTCATACAGGACATCCCTCG ACACCCCTCTGAGATCCAGACGACGGGGTCCCTTGCTGAGACCGCAGATGCTGCCTATGCTGAGTTTGAGCCGCACCTCC GCCCTCAGGGGATACCTGCTACATATCCGGGAGAGGCGGTGGAGGGTTACATGAGGTGGTATAGCAGAGTGTCACATGTG TTCATCATCCCTGAGGATAGGAGGGAGGAGCTTAGTGCCGTGGTAAGTTTGGATTCTAAACTTGTATATTATTTTTATTC TTTCAATTGTGATTTTTGTTAATGAAATTATTTTTGTATATTATTTTTATGCAGTCTGCCATACGTAGGGGTGTGGAGTT GTTGGAGCAGTCCCTGGAGGTGCCAGGTGCTTATGCTCCAGGGACACAGCCCCGGATCCTCACGGAGAGGGCGCTCGATC TCTTTCGACGGAGTTCCTTCGTTGGTACCCAGAGAGTTGCCTTTTCTGCTATTCGAGGAGCCGCAGCTGCGGGAGGCAGA GCTCGTGGAGGCGGAGCTCGTGGAGGCAGAGCTCGTGGAGAGGGTGATCCTGGAGAGGGTGTTCGTGGAGGTCGAGCTCG TGGACCCAGAGGTCGCAGGGGGCGGGGTCGGGGAGAGTGATTTTATTACACTTGTTATGTGGGATCCATTATTATGTATA TGTTAGGACTTTTTATGTTATGTTATGACTCTTTCCTCGTTTTATTTGCATGTGTTATATT
CDS sequence (LotjaGi6g1v0127700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGAGGACCTCGGTCGCGTGTCGGAGTACGCGTGGGGTGCGATTGCGCTGGCTTCGTTGTACGAACAGCTGAGTCG TGCTTCCCGCAGGAAGACAGCGCAGATCGGTGGGTTCACCTCCCTCGTGTTGTCATGGGCGTATGAGTACATATCCAGCA GCGTCATTATCAGGACGGAGGTCCCCGGCTACACACAGGACCAGCCTAGGGCGCAGCGGTGGTCCACGTCTCGGATCGCG CATTCCGGACTCGATGAGAGACGGGTCATGCTCGATGAGCTTACAGTGGATGATATCACATGGACCCCTTTTGAGGACCA TCGAGATGTTCGACCGCGGGATCCCAGGGCCCTCTATTCCGGCTACATCCGGACACCTTACGGCCGGTCTGTGAGCCTAC ATCTACCAGAGCGGGTTATGCGCCAGTTTGGCTTCATACAGGACATCCCTCGACACCCCTCTGAGATCCAGACGACGGGG TCCCTTGCTGAGACCGCAGATGCTGCCTATGCTGAGTTTGAGCCGCACCTCCGCCCTCAGGGGATACCTGCTACATATCC GGGAGAGGCGGTGGAGGGTTACATGAGGTGGTATAGCAGAGTGTCACATGTGTTCATCATCCCTGAGGATAGGAGGGAGG AGCTTAGTGCCGTGGTAAGTTTGGATTCTAAACTTGTATATTATTTTTATTCTTTCAATTGTGATTTTTGTTAA
Protein sequence (LotjaGi6g1v0127700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEDLGRVSEYAWGAIALASLYEQLSRASRRKTAQIGGFTSLVLSWAYEYISSSVIIRTEVPGYTQDQPRAQRWSTSRIA HSGLDERRVMLDELTVDDITWTPFEDHRDVRPRDPRALYSGYIRTPYGRSVSLHLPERVMRQFGFIQDIPRHPSEIQTTG SLAETADAAYAEFEPHLRPQGIPATYPGEAVEGYMRWYSRVSHVFIIPEDRREELSAVVSLDSKLVYYFYSFNCDFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Pfam | 1 | 198 | 198 | 6.0E-25 | ||
PANTHER | 2 | 208 | 207 | 3.1E-20 | – | |
PANTHER | 2 | 208 | 207 | 3.1E-20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0127700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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