Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0130800 |
| Transcript ID | LotjaGi6g1v0130800.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Asparagine synthetase; TAIR: AT3G47340.1 glutamine-dependent asparagine synthase 1; Swiss-Prot: sp|P49093|ASNS2_LOTJA Asparagine synthetase [glutamine]-hydrolyzing] 2; TrEMBL-Plants: tr|Q9MB60|Q9MB60_ASTSI Asparagine synthetase; Found in the gene: LotjaGi6g1v0130800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:36809217..36813315) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGTGGCATACTTGCTGTGCTTGGTTGTTCTGATGACTCTCAAGCCAAAAGGGTTCGCGTCCTTGAGCTTTCTCGCAG GCAATGATTCTACTTGAATTGCTTCCTTTTTTTTTTTTGGTTACAAGGAGGGGAAAACCCCAAGCAAAACTAACTTAGAC TAGTAGCAGTATTAAAACTAGTGCCAATGTCTCTAGCAAGAATTGCTTCCTTTTTTGAATACCCTTTTGCTTAACTTTGA TGTTTGTGTCCATAGTATCTATTTTTCTGCATGTTTCCCATGATCAAGCTCTTCACTACCTACACTTTTCTGTTTTAGGA CACTATATATGTGCAACCGATCACTTTGACTTCACTTCTTGTGATTAGTTAGTTGATTTTGATGCTGAATTTTTTTTCAT ATTGACTACTGAGAATTGAGTGATGATGATGATGTGGAATATGAAGAATGAAAATTCAAAATGTTTTGTTTCCGAAAGGG TATCAGTGTTCTTTAGCAAGTAGTTGCTATAAATACTGAAATATATATAACCTTAAGAATAATAAGTTGTATTTTATATT TCAAGTGAACATGACAAGATGGTGGTGGTTACAATATGTGTGAGGCTTATAATTTGGTTCCTTGTTTTAACTCTCATGGA GATGAAGTTAAACAGAATTGAAATTATAATTATCTCTTTTATATTGGAGCCAGATGCTCTCATCTTTCAGAGTTAACAAG TAATTTAGGATAAACATAAGTGACTTTGACAAGGTGAGAATTTTTTATACCACTGGCTGGCTTATTAAGACAAGTGGGGT GATGTGGGGTCCATGTAATGCAATTATTGGTGATCTCTAGTAGAAAAAAGTTCAGAACTGAAAACAAGCAATGAAAAGGA GTTAATTTTGTCTTGAAAGTGCATGAGGAAATTCTATGTTGTCTGTTCACTAAGGGCAGAGTTTGAATGAAAGTCATTGT AACTTATTATTCATTGTTTGTGCTTTGTTGATGTCACAGATTGAAGCACCGTGGCCCTGACTGGAGTGGGCTCCACCAAC ATGGTGATAACTTTTTGGCTCATCAACGTTTAGCAATAGTTGATCCAGCTTCTGGTGATCAACCTCTCTTCAATGAAGAT CAATCTATCATTGTCACGGTAGGCCTTATGATAATTTTGTGATTTATAAGCTTTATGATATATAAAGCTGGAACATGTGT TACTTATAATAGCATGATTTGTTTTTTTGTTACCTTTTATTTATAAATCTCTTATGTGACAAATTATAAGTTTATGACTG ATGTTATGTATCATTACCCCTGAAAACCAGGTGAATGGAGAGATATTCAATCATGAAGAACTCAGGAAACAATTGCCAAA TCACAAGTTCAGAACAGGATGTGACTGTGATGTCATTGCACACCTGGTTAGTCAACAATTTTTAACCTGCACATATACAG ATGAAAATCAGAAGAAATTTTTGAAACTGTCTTTTTTTCTCCTTCCTTAACTGTTGTTACGTCTAATCTTGATCAAAATT TAGCATCCTTTCTATCATATAGATATAGAATAGGACTTGTAATTCTTACCACCTTCTTGTTACTGAAATTGGCCTTTTTG GTTGTTAGTATGAGGAGCATGGAGAAAACTTTGTGGACATGCTGGATGGTATATTTTCATTTGTTCTGCTGGACACCCGC GACAACAGTTTTTTAGTTGCAAGGGATGCTATAGGGGTCACTTCCTTATACATTGGTTATGGACTAGATGGTACTGTTAT AACATGCCCTTCTTCTTGAATTGAATTCATGATGTGTGTTCTATGTTAAATCAAATAACAAAATTGAATTGAATAAGTTG TGACAATTTTGGCACGCTTCTGTTCAGGGTCCGTTTGGATTGCATCAGAATTGAAAGGGCTGAATGATGATTGTGAACAT TTTGAGTTATTTCCACCCGGTCACTTGTACTCTAGCAAGGAAAAAGAGTTCCGTAGATGGTACAACCCTCCATGGTTCTC TGAGGCTATTCCATCAGCCCCTTATGATCCACTAGCTTTGAGGCAGGCCTTTGAAAAGGTAAAATTCACCAAAACGGTCA ACATATCATTGTAAATTTGAAGCTTTTACATTTGAATAACTGATAAAATGAATGTCATAACAGGCTATCATAAAAAGGTT GATGACTGATGTGCCTTTTGGAGTTCTATTGTCTGGAGGTTTGGACTCTTCATTGGTTGCATCCGTCACTGCCCGCTACC TGGCAGACACAAAGGCTGCCAAGCAATGGGGATCAAAATTACACTCATTCTGTGTGGGCCTGGAGGTGAATACCTACTCT ATATAGTATGTTTGAATCAGTTTCTCTATCATCACACTCGATTCTGAACCAAAAGCTACTCGCAGAAGTTTCTCTCCATA ACTGATTCGGCTTTCAAAATCAATTGTAGAACTGTTTCCAAAATATGCACATCTTTTAGTGGATTTGTTTAATAAATAAA AGAACTCTTCAACGTTTGTCTTAATCTTTAGTCATCTTATATTGAGTAGGGAGCACCAGATCTGAAGGCTGCAAGAGAAG TAGCTGACTATATAGGAACTGTCCATCACGAGTTTCAATATACTATTCAGGTATGTATCTCCTTGAAATAGTACTTTTCT GCATAAAATTTGGGGACCCTTCAATTCTAAAATTGGTAAGTTTTTTATGATATTGCTTATGTAGGATGGGATTGATGCCA TTGAGGATGTCATCTATCATGTTGAAACTTATGATGTCACAACCATCCGTGCTGGCACTCCAATGTTTCTGATGTCCCGA AAGATCAAATCATTGGGAGTCAAAATGGTACTCTCTGGAGAAGGATCTGATGAGATCTTTGCGGGGTATCTGTACTTCCA CAAGGCACCCAACAAAGAAGAGCTCCACCAAGAAACATGCAGCAAGGTGATAGAATTATCATGCTCCTTGCCAGAACAAT ATAAGTGGTCAAAGTAAATGTTCAATAGATAACATGCTTTTGTTTAATGCAGATCAAAGCACTCCACAAATATGATTGTT TGCGTGCCAACAAATCTACATATGCTTGGGGTTTGGAAGCGCGAGTGCCGTTTTTAGATAAGAAGTTTATCGATGTTGCT ATGGGCATTGATCCTGAAAATAAAATGGTATGCATACAAAATGTTGCAGTGCATTATAACTTTGAGAAGTTCCATCTTCT AAGTGGTTTACTTTTTTTTGGTAAGCAAGTGGTTTACTTACTATTTGAACTGTTCAGATAAAACGAGACGAAGGACGAAT TGAGAAATGGGTACTGAGGAAGGCCTTTGATGATGAAGAGAATCCTTATCTTCCTAAGGTACTACTCTACTATTTTCTGC AATGTCAGTAGATGTTTGCATAATTAGTTTGCTAATCTAACATCTAAGAATTTAATTTCATGCAGCACATTCTGTATAGG CAGAAAGAACAATTCAGTGATGGAGTTGGCTATGGTTGGATTGATGGGCTGAAAGACCATGCTGCAAAACATGTAAACAT GAATCCTACCTTTTCTCTACAAACCCATTTTATGCGTCACTGTGACATTTCATTAAAACTTCAATGGTAGGTACTCAATT ATTGTTGCTAATAGAGTGTTCTTGACATTTTCTTATAGGTGACTGATAAAATGATGCTCAATGCATCTAACATTTACCCC TTCAACACTCCCAATACCAAAGAAGCCTATTATTACAGGATGATCTTTGAGAGGTTCTTTCCTCAGGTAACTCAAAACAA TCATAGATTTGTAACGAGGGGAATACATAATTCTTTTCAAAATTCTTGTTAGTGTAGAAAGCGCTGAATCAAACACTTGT GTTCCTTAATTCTGTTTTGCAGAACTCCGCCAGGCTCAGTGTTCCTGGAGGAGCCAGTATTGCATGTAGCACAGAGAAAG CTATTGAGTGGGATGCTGCATGGTCCAACAACCTTGATCCTTCTGGAAGAGCAGCACTTGGAGTGCATGATTCAGCTTAT GACGACCAGTTGAATAAGTCAGTGAGCAAAGGTGTTGAACCAGAGAAAATTATACCCAAGATGGAAGTTTCTCCTCTTGG AGTTGCCATCTTGAGCTAG
CDS sequence (LotjaGi6g1v0130800.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTGGCATACTTGCTGTGCTTGGTTGTTCTGATGACTCTCAAGCCAAAAGGGTTCGCGTCCTTGAGCTTTCTCGCAG ATTGAAGCACCGTGGCCCTGACTGGAGTGGGCTCCACCAACATGGTGATAACTTTTTGGCTCATCAACGTTTAGCAATAG TTGATCCAGCTTCTGGTGATCAACCTCTCTTCAATGAAGATCAATCTATCATTGTCACGGTGAATGGAGAGATATTCAAT CATGAAGAACTCAGGAAACAATTGCCAAATCACAAGTTCAGAACAGGATGTGACTGTGATGTCATTGCACACCTGTATGA GGAGCATGGAGAAAACTTTGTGGACATGCTGGATGGTATATTTTCATTTGTTCTGCTGGACACCCGCGACAACAGTTTTT TAGTTGCAAGGGATGCTATAGGGGGTCCGTTTGGATTGCATCAGAATTGA
Protein sequence (LotjaGi6g1v0130800.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLHQHGDNFLAHQRLAIVDPASGDQPLFNEDQSIIVTVNGEIFN HEELRKQLPNHKFRTGCDCDVIAHLYEEHGENFVDMLDGIFSFVLLDTRDNSFLVARDAIGGPFGLHQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 141 | 141 | 8.0E-92 | – | |
| PANTHER | 1 | 141 | 141 | 8.0E-92 | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| SUPERFAMILY | 1 | 141 | 141 | 6.0E-41 | ||
| CDD | 2 | 141 | 140 | 1.73219E-63 | ||
| Phobius | 2 | 10 | 9 | - | – | |
| Gene3D | 2 | 143 | 142 | 6.0E-48 | ||
| ProSiteProfiles | 2 | 149 | 148 | 29.716 | ||
| Phobius | 11 | 16 | 6 | - | – | |
| Phobius | 17 | 149 | 133 | - | – | |
| Pfam | 48 | 141 | 94 | 5.6E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0130800.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…