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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0134100 |
Transcript ID | LotjaGi6g1v0134100.5 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-binding family protein; TAIR: AT1G07350.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q84TH4|SR45A_ARATH Serine/arginine-rich splicing factor SR45a; TrEMBL-Plants: tr|I3SKU2|I3SKU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0134100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38692936..38697987) extracted from Lotus japonicus Gifu genome v1.2.
GAACATTGCAGCCCACGGCCCACGAAGAATTGAAGCGTGTTTAATTCTGGTTTGGCGTCCGATTCTCCAGAAACTTCTCC CCAGACGAAAAATTACAGCCTCACACACTTCCTCCCTCTACATATATTTCATCTCCACTTTCCTCTCCATTCCAAAACGC AACCCTCCCCGTATCGTTCACCTGAGCCGCTGCTACCACTGCATCATTATCACAGCGTTCATCTGCTTTTATGGTGAGTT TCAATCTCATTCGTATCTTATATCTGTAGGGCCTTAGCTCGCTGATTTCGTTTTTTTCTATTTTTTTTATAATCTGGTTT GTGAAATTTACGTGTGAAATTGAATTGATCATGTTGTTTGCACTGCTTTGAATTTCCTTTTTGTATTGGGGATTTTAGCT TTTCTATGTTGAAGTTCATTATCGAAGATGATGTATTGAATTTAATTGTTTTGTGGGTTGATTTTGAGTTTTGAAGGGAT TTAATATTTGTTTGTATGCGATGCTTGATTGATAGAATCTTAGATAACTATGTAATTAGAGCCGTCAAGTTAACGAACCC AATAAGCAAGGATATGTTGGTTGCAATTTTTGAAGTAGCTATCACTACCATACTGTTTGGTTCAAAGGAGGGGAGGGGAG GGGAGGGATTTTAATGGAGGGGAGGGGAAGGGAGGGGAGGGATTTTAATACTTATTACGTTTGGTTCATAGGAGGGGAGG GGAGGGAAAATAACTTATTTTTATTTGGTTCACTAGGGGAGTGGAGTGATTTTATAATTAAAATTACTTTTATACCCTTT TATATATTTACTTTAATTAAACAACACAATATAACATCCTTCTTCATCAGCAATTATTCTGCATAATTTTAAACCTTCAC CACAACAAAATATTCTGCATAATTTTTCAGGATCTGCACTTCCAACAAAATATTCAAGTCGGAGCAAAAGCAAAATACAA ATAAGAAAGAAAACTGGAAAAATCCCTGAAACAGTGCCTCAAAAATTAATACACAAGTTATAAAGACTAGAGAACACTTC CAGGGAAAGAGCAAAATAGTCAAGACCACTAGTAACATTCAAGACCCTTCTCCAGTAGCACTATAAACAAAATCCTTCAT GCCACCCACCCACAACAGAAGCCTCGAAACAAGCAAGGATTGAATTAGCTGGCAAAAGCAAACCAATCCTGTACTGCAAT ATATATGCACAACATATAGTAGCACTAATGGCAGCTTTTCTGGAAGTGGCTGAATAAATTTGGTTTAGACCAGCTTTGTT GCAGTTAGTGAGAAAATGGAGTATGAGTTCATGAGAAAGATTAGTCAAGTACAAGTTCATTCAGTTTTTGTTTTGTCTTA TTAAATTAAGTATAGAGATTTGGCACTGATTGATCTAAGCTGCTTCATTTTCCAAAGTCAATTACTGTGTTAGCTGCATA ACATTTTGATGCATTCTGCAATTCCACTAAGACACGGTTTCTTTCTTTCTACTTCCCAAATCTTATGGTGCCTAATTAGT ATGTATTATTTGGGGCAAGAACATTTGGGGCAATTGGAAATGGAATTGCAGATGATACAGTGTCGTACAAACAATGACAG CATGAATAAACATCACCATGATGAACCAAACAATATATACATGTTGAACCAAACAATATAACATTGATAGCATGAATAAA CATAACAGAAAGAGGGCTACTAACACATACCTGATTGATTCAATTGGTGACAAAGAAAGGGCTGCAGTTGGGGTGCGAAT GCAGGGGCCGGCGCAGCCGAGAAGAGGCGGCGGCGGAGTGGGGGGCACCGGCGGAGAGAGACCAGAGAAGGGGCCAGAGG TGGTTGGTATGAAGAAGCTGACCTATACGTGAAATGAAGAAGGGGATATACACATGAAACCCTATAGGATAAATTGGAAT TTTTTAATTTGTGCAGGGTTATTTTTGTCTGAAATTTATTTCCCCTCCAAATTCCCCCACTTTTGGGGGGAACAAAAAGT TGAGGTTGGAGGGAATTTGCTCCCCCCCCCATTTCCCTCCCCTCCCCTCCTAAAATTTGAACCAAACAAAATCAGATTTT TAAAATCCCTCCCCTCCCCTCCATTATCCTCCAACCAAACATTTACATGTTATATATGATAGTGGTTAGTTTTCTGGATT ACAAACTATGTTGTATGTCAAGATATTATTTGTGTTTAATTTTTTTTAAGTTAAAAAAATTGAATACTAATATCACATAA TATCTTGACATGTAAACGAGTTTGTTAACATGATACTAACCTCTCATACATTAGATATGTGGATATGTGGATAAGTCTTC AAATCCACGAATATGAATACCTTGATCTATGGTACATGGAGAAATTATCCGGTTTGCAATTTTTGTTTGGCTTATTCAGG ACTTGGTTATATAAGTTTATCATTAATTATTAGAAGTGCTGATGTTTCTTTTCTTTTTCTTTTTGGTTGCTTGCTGAATT TTGGCAGATGTCATACTCAAGAAGATCAAGGTAAGATGCCCTTTCAATGTTGAATTTTTCTAGTCTATTACAAGTGACAT ATGTTTTTGCTTATAGGTGTTCCCTTTTCATTTTACAGGTATTCTCTTTCTCCTTCTCCAGACAGGAGATACAGGTCTGT GTCCAGGTCTCTTTCAAGGTCCCAATCCCGAAGCCGTTCAAGGTAGGTCTCTTAATTGGGTTAATTCTTTGTTGCTATAT CTGATTTTTTGATCACACATTCATTTTCAAATTGTTCTATTTTTTTCTTTGGTGATGTAGGAGTTTTTCTCCCGACGTGG AAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAATTGGAGAAGCATTTTGCTACT GAAGGAAAAGTGTGTCCTCAATCCATTTTTACTTGTGGTAGTTCTAACATAATAGTTGTAGTAGCTTATGATTCCTTAGG GATTTTGTATGCTGTCTGTCTACTGTTTCTTACTTTTGAGTTGGCCTTTTCTAGGTGATAGATGTTCATCTGGTAGTCGA TCCATGGACAAGGGAATCCCGTGGGTTTGGATTCGTGACAATGGATACTCTTGAAGATGCTAATCGGTGTGTTAAGTACC TGAATCGCTCTGTACTTGAAGGGCGTGTTATCACGGTTGAGAAGGTATACCTTTCGAGTAAAGTCCTATTTTTGGGCTTG ATCTTTAATTTCTAGATGTTTTGGTTTTTTATTTTTGGTTCAAATCCAATTCATGGAAGATATATGGATGATGTGCCCTT TAAGTTCTATTGAGTTTTGAATGTTTTGTGCTTCTTTCCATTTGAAGTTTCTGTGGCAGCAGGTCAGCTGTGTGAAGCAG CTCAACATCAAACTCTCAAATCACAACTAATCAAACAAATCAAATACAACAAGTCTCAGACCATTGGGGTTGTATGCCCT GCATTTCCCTCTTTCTCCTTGCATTTATATCTTATTATATTTCATGTTCCCTGAATATGAATAGTTTTTAAGAAAAATAT GTCATATTTGACAATCATATTGTTATGATCTAAATTTTTGGTGAACATGTATTATTTTGATTTTCATATCAGTAGTATTA GTGCTTACAATATTGTGCATTGCAATGCTCTGTCCTCATGCTGTTGTATGTGTTTATTGCCAGGCTAGAAGACGACGTGG TCGAACCCCCACTCCTGGGAGGTACCTAGGGTTGAGGACTGTTCGAGGTGTGTTTCATTGTTCTTTCTTGTGATTTCATC TTTTACTGTATATAATTATTCTCAGAACGTGTAATTGGGCTAACACTGTTATCCCATTTGATTTATCAGCACGCCGGCGC TCTCCAAGTTACTCTCCTCGCCGCCGCTCTCCAACCTATTCTCCTTACAGAAGAAGCTATAGTCGTTCTCCCTATTCTTC AGACCGCAGCAGGAGTCGATCTCGATCTTACTCCCCTGACTATCGGAGAAGGAGGTCCTACTCTCCATACTACAGCCGGC GAAGGAGGTCTTACTCTCCACACTACAGCAGGCGCCGCCGGTCATATTCCCGGTCTCGCTCTCCTTACGACGGCTCACCT GTCAGCATCCGTGACAGATCATACTCTCCTTATGACTCCAGATATGATTCCCCGGACGATCGCTCCTACAGAAGGCCCCG TCACAGGTCACTCTCTCGAAGTGTGTCGCCCCCGCCAAGGAGAAGGTCAAGGAGGAGCTACTCACGAAGTGTCTCTCCTG TTCGGAGGAGGAGGTACTCACCAAGTGTGTCTCCCAGTCCAAGGAGGAGATCGGGGAGGAGTTATTCAAGAAGCTCTAGA AAGAGTGGTGGTTATTATTCCAAACGCAAGTATTCGCGATCAAGGAGCCCAAGTGTGAGTGCAAGTTCAAGATCAATATC GAGGTCTGATACTCCCGGATCCACTCCTTGAACTTGATATTTGTAGCTCGTTGATTGCCTTATGCATCTTAGGTTTATTG GTGTATTGGTGCGGAGAACTATGTAGAGTTATAGAATGGAGGTTATCATGGTTAGTTTCGTAGAATGGAGGTTATCATGG TTAGTTTCGTTCAGGGCTTGACTCGAGACACATAATGCTTTTATTATATGATGGGTACTGAAATTGCGTTAGCGATCATA GTTTCAAGTTTCTTATGGTTTTTGTTTGTTTTCTAGAACTTTACATTCGTAAGTAAGTACTCTGGTCATTCTCATCTCTA CTCGTAGTAAGCAGAAGTATTTTGAAAAAGATCATACGAGCTTTAGTAAAAATGTTTTGTATAGATGCTTGGAATATATA TTTTGAAACTAATAACAAGTTTGTATTGAAAAATATAGTTTGGTGGTATAGGCATCCACTTAAGAGGAGATCTTTTGGTC GGATTAGAATAATCATTCCCTAACTAATATTAACAGCTATGAGCCTACAAGGTAAAATGCAGTAAATTTCATTCACATTG GATTTGTTCTGTAGTATGTAAGTTACGAAAATATCAGGTACCAAACTACCGTGGTAACCATCCTTTCTCAACTGCCTCTC CTAGCCCAAAGC
CDS sequence (LotjaGi6g1v0134100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTCATACTCAAGAAGATCAAGGTATTCTCTTTCTCCTTCTCCAGACAGGAGATACAGGTCTGTGTCCAGGTCTCT TTCAAGGTCCCAATCCCGAAGCCGTTCAAGGAGTTTTTCTCCCGACGTGGAAAATCCAGGAAACAATTTGTATGTGACAG GATTGTCTCCTAGGATCACCAAGAGAGAATTGGAGAAGCATTTTGCTACTGAAGGAAAAGTGATAGATGTTCATCTGGTA GTCGATCCATGGACAAGGGAATCCCGTGGGTTTGGATTCGTGACAATGGATACTCTTGAAGATGCTAATCGGTGTGTTAA GTACCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCACGGTTGAGAAGGCTAGAAGACGACGTGGTCGAACCCCCACTC CTGGGAGGTACCTAGGGTTGAGGACTGTTCGAGCACGCCGGCGCTCTCCAAGTTACTCTCCTCGCCGCCGCTCTCCAACC TATTCTCCTTACAGAAGAAGCTATAGTCGTTCTCCCTATTCTTCAGACCGCAGCAGGAGTCGATCTCGATCTTACTCCCC TGACTATCGGAGAAGGAGGTCCTACTCTCCATACTACAGCCGGCGAAGGAGGTCTTACTCTCCACACTACAGCAGGCGCC GCCGGTCATATTCCCGGTCTCGCTCTCCTTACGACGGCTCACCTGTCAGCATCCGTGACAGATCATACTCTCCTTATGAC TCCAGATATGATTCCCCGGACGATCGCTCCTACAGAAGGCCCCGTCACAGGTCACTCTCTCGAAGTGTGTCGCCCCCGCC AAGGAGAAGGTCAAGGAGGAGCTACTCACGAAGTGTCTCTCCTGTTCGGAGGAGGAGGTACTCACCAAGTGTGTCTCCCA GTCCAAGGAGGAGATCGGGGAGGAGTTATTCAAGAAGCTCTAGAAAGAGTGGTGGTTATTATTCCAAACGCAAGTATTCG CGATCAAGGAGCCCAAGTGTGAGTGCAAGTTCAAGATCAATATCGAGGTCTGATACTCCCGGATCCACTCCTTGA
Protein sequence (LotjaGi6g1v0134100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSYSRRSRYSLSPSPDRRYRSVSRSLSRSQSRSRSRSFSPDVENPGNNLYVTGLSPRITKRELEKHFATEGKVIDVHLV VDPWTRESRGFGFVTMDTLEDANRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVRARRRSPSYSPRRRSPT YSPYRRSYSRSPYSSDRSRSRSRSYSPDYRRRRSYSPYYSRRRRSYSPHYSRRRRSYSRSRSPYDGSPVSIRDRSYSPYD SRYDSPDDRSYRRPRHRSLSRSVSPPPRRRSRRSYSRSVSPVRRRRYSPSVSPSPRRRSGRSYSRSSRKSGGYYSKRKYS RSRSPSVSASSRSISRSDTPGSTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 49 | 49 | - | – | |
Gene3D | 3 | 132 | 130 | 4.7E-27 | ||
PANTHER | 9 | 154 | 146 | 8.4E-62 | – | |
PANTHER | 9 | 154 | 146 | 8.4E-62 | – | |
SUPERFAMILY | 29 | 139 | 111 | 5.37E-27 | ||
CDD | 47 | 124 | 78 | 6.21555E-38 | – | |
ProSiteProfiles | 48 | 126 | 79 | 17.251 | ||
SMART | 49 | 122 | 74 | 7.5E-22 | ||
Pfam | 50 | 119 | 70 | 1.7E-16 | ||
MobiDBLite | 124 | 344 | 221 | - | – | |
MobiDBLite | 154 | 180 | 27 | - | – | |
MobiDBLite | 237 | 254 | 18 | - | – | |
MobiDBLite | 255 | 280 | 26 | - | – | |
MobiDBLite | 281 | 310 | 30 | - | – | |
MobiDBLite | 317 | 344 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0134100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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