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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0141200 |
| Transcript ID | LotjaGi6g1v0141200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coiled-coil domain-containing protein 22 like; TAIR: AT1G55830.1 coiled-coil protein; Swiss-Prot: sp|B0WTU5|CCD22_CULQU Coiled-coil domain-containing protein 22 homolog; TrEMBL-Plants: tr|I1N086|I1N086_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0141200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40869166..40873981) extracted from Lotus japonicus Gifu genome v1.2.
TGCCAAGTGCGTGTGAAATGGCTATCAAACAGAGTTTGCCAGTTGCCGCACCAAGAGAGTCAAGCTCAAGACGAAGAAGA GAATTCCCAAGTTTTTCATCCTCTATACGGCGTCGTTTCCGAGTTAACTCTCTTCCGACTCAGTTCCGGACCGAGTCACC ATCACCGGCATCGCCTCCGCGGTTGCGAATCTGGGTTGCGGCCAAAATACCAGCTTCCATAAGGTACTGTGAGAATCTCA AAATGCTGAAATCTTGTGTTTTTTTTTTTTCTGGGTCTGTGTTTGGATGCTCAGAAAATATGGGAAATCATAAAAAGTTA ATTTTTTTGACATGATTTTCAATTTGTTGAGAATCTGAGATTATTGAACACTGTCCAAGTCTTTTTATTAATTTTTCCCC TTTTTTTTTGAAATTTTTCTGTAAAATTTAGTCTAGTAGCTATAGGTTGATATCAAAATCTGTGCATGATATTGTTCTTT GACACTGTTATCTTTTGATGATGACTTTATTTATCTCTTTATAAGAATCAATGTATTAGTCTGTTACAATTTGAAGTCAG TTAATTATCATTTTGGATAATTGAAATTTAAGTACCTTTTGGTTCATTTGCATTCCTAATAGAATGAGGGAAGTAGGGTT ACTTATAGTAATGAGGTAGTTTGTTATTACAGTTCTCGAAAACGATCGAAACTTAACCAACTTAGCCCATGTTGCTTTGA ATTCAATCATTTGGTCATTGGAGCATTCTTTTTTCAGTTTTTTGCCTTCTCTCTTTTTGATACAGGAGCTTTATGATCTT TATTTGCGCGGAAAAATGACATTATATAGTATCTTAGATGCTTGTTGCTAATTTGGTGTATCTGCTTGCTTTTCTTCTTG TTATTGTTATTTTTTGGATTTAGTCTTAAAAGCAGAATATACCTGTCTAAGTTGATAATATTTTGTAAATAGGAGTTAGG AGTCGCCTGAAAGTGGAACGTTGCAAACGATAAAAATACCAGTGCTTGAAACAAACTAAGAAGAAAACTTATGAATTTCT TCTGAGGACTCAGCTAAAAGGCAGATGGTTAAGGGTAGCTGGTCACTATTCTAAAGTTGAAAGCAAATTAGATTGTCTCA GAATGGAGACACAGACACCTGAAACAGAAGGTACCAAGGGTGATGCCTCAATAAATCAGTCAGTAAAAGATGAGTCCAAC TCCAAGATGGAAGGTTTTAGCAGGGATGAATTGAATTGTGTATTAGTTGAAAAGGAATTGACTGAAGGACAGGTTGGTGC TGGAAGAGGTTCATTTGGAAATGAAGAGAAATCTGCTCCTGTTGGTGATGGGCATTTGACAGTCTTGAAACAAAAGGTAT ATTTCCCAAATAAACTCATGATATCCTTAGATTAAGCTAAAATGCTTATATTCAGCATTTCAGCCCTTTCTCATTTCTAT ATATAATATTTCCAAATATGTGAAATGTGTAGAGCAAAGAAGAATTATTGGATTATAAGTCTTATTTTGACTTATTAGCA ATGCATATGCAAAATATACGGCTGAAGTGCTTCTTTTCCTTAGGCCTGATGCTTGACTAGATAAGATTTGAAACTGATAA ATTTCAAATTCAGGAGAAAGAACTCATCGATGAAGTAACTGTGAGGACTTCAGAAGTGGAGCATCTTGAACAAGAACTGG AACTGATGAAGGCAGCAGCTGAAATGGCATTTAATAATCAACATTCTGTTGACTTCTACATTGAGCAGTTGAATGAGCAA GTACAAGCAAAAACCAATTACCTTTCGACTTTAGAGTCAGAGTGGTAGGTCAATCTGTTCATATATATATGACACTAACC AAATATTACTATATTCGATACAGATCACTATAGGATTATTTTAAATTTTGGATTAGGTGCAAAATGTCAATATAGAATAT TTCAATGTTCAAATTTGACCTTTCCAATGAAGGACAAACATATATCTGTATAAACATACACACATTAATGCACGTAATAA TACATGTATATGTATGTGTATTTTTAGATAAAACTAATAATATTATATTTATTTCTTGCGATAGTACAATCACTGGAAAG ATTGTTAACTTCACTAAATTTCAATGTGTCACAGGGATACTGTAAGAAAACCCTTGGAAGAGAGAAAGAGAAATCTTGAA GAGTCTCTATATTCAAATAGTCCAGATGCACAAGCAATGCTCCAAAAGTTGAGAGAAGTTCAGCAGGAAGAGCAGTTCAT TTCATCTGAAATTCAAAATAGGTGCATATCCAATAGTTAGTTCATTTTACGTTGTTTTAGCCAACTGAAACAATATTCAA AAGTTTGTAAAAACAGGATTAAAATGCAATTTTAAACAATGGCTTAAGATAATAAGCCTCTGCTTACTGCATTTTAGAAA CCCGAGCTGGAGACAATCAATGAGTCACATGCTTTCTAGTTTTCAGTTTTCACTGGGAATTGTCTGTTCATAGTACACAG TTTTCATTACACCATCCATCTTGATTCCCTTCATGTATGGCTTTAATGAAGAATGCTGCCTTCTATCTTTCTTCTTTTCA TGACTGTGAAATTGAAACTGGTTAGATGTTCTCTTTTTTATAGCTCTTTATGCACTAAAGCCATATTGCTGAATTTAACA ATAAATGAACTGGCCTCTCATAAGCTCATAGAAATAATCTAGAGACACATTAAATTTAGTCCCTGGCTCCTCTTTATTTA TTTTATTTCAGGAATTTTTGACTTTGTATCTATTGCATCTTTAGTTCCTTATAATTTCCATCAAGTTCTCCAATCATGTA GTAACGTGTGTATAATTTTTTTAAATTTAACAACAAAGTCTTAATAGATGTTATTTATATTTAGAAATAAAGTCCACTTG TCATTGTTTGAATGGAGAACTTGACAAAAAGGACATGAGCAACTTGATGTATGTTTTTTCCATATAAAATACTGAATGTG CCAAACTTCCAACTGATTTCATCTTAACTCTGTAATGCTTTTAGTAGATTGATGTCTTCACATGATCAGATTTACCTCAA AGATGCATGTGCCTTCTTGACTCAGATATTCTCTATCTATCTAGGGAAGAGGAACATACAAAACTTCTTGCTGATTTGGA GAAGCAGCAGAAAGTAGCATCCAGGAAATCTTATACTCACCGGATAAAGGAGATTACAAAAAATAGTCGGAAGCAAGATG CTGATATTGAGCGGATTTTAAAAGAAACCAGGGAGGTTCAATTGGAGAGTAATTCTATCCAGGAGCGCTTGCATCGGACA TATGCTGTTGCAGATGAAATTGTCTTCAGGTATGAAAGTTTTATTATGGAGCAATTCCACATGCCCACACAGTTATGTTA ATGAATATGCACACACAAGAAACAAGAAATGAAATGGAAATATACATGGGAACAAATAGAGGGAATAGAGAGAAGAAAGA GACATGAAACACCATGAATATCAGTAGAGATCTGGCTATAAATATTATTTATGTCATGGCTGATTTTGTTTTTCACCTAA TATGCAATTTCTTTTCTCTTGTTTATGCTTACAGGGAAGCAAAGAAAGATCCAACAGGACTGCAGGTTTATAGGCTCCTG GTTAGCATCCATAAAGGTTTTGAACAAATATCTGAGAAAATCCTGGCAACTGATAGAATTAGAAGAGAAGTAGCTGAGTA TGAAATGAAACTGGCCGCCACAGCTTCCACAAGCTTAGATGTGAGCAAACTTCAAGCTGATCTCGATGTCATTATTAGGG AAAATGAATACCCTGGATAGCATTTTAGTCAAGAATTTTCAATGACTCATTGGAAACTGGCAGCCACAACTCTGGAAGCT TTAGATGTGAGCAAGCTCAAGTTGATATGGAATTATGGATGCTATTATTTGGGAAAACGAATACATTTCTTCACAGTTAC ACAGGACAAAAGAAGTTATTTGAAGCACTCATTAAAGCAATTATTTCTAACATTCAATTTTAAACCTTGCCCATTTTGTG TTTCAAAAGTCTATATAGAAACGCATTTAAGATTTTGTTTTTCTCTAATGATTGAGGGAGTATTCTTGCTCACTCCTGGA TTTTGTTCACTGTATTTTCCACAAGGGTTAATATATGCAGGGGACAATCTAATTTTCAGCTCAAACCGGTAGTTGAGTAT TGGAATGTCTGTTTACAGAAATATTGATCTTGCCAAGGACATTCTGACTTCACTAAAACTGAAAAGCACGGATGTTGAAT ATGTTCGGATATTCGTTGACATCAATGCAAATGAACGTTAACATGCACTTTAAGATTATAAGTACACGACTTTTTTTATG AATTGAAATGTAAGAAGTTAATTGGTATTGAAGCACATCAATAAGGATTGTAATACAAGAATCGGTATTTGAAAATGAGC TTTTGCTTCATTCATTCATGAATACAAGTCAGTATCTAACTGTCAACCAAGCTGTTTAGCTATTTCTGACAAACTGCCGA ACTACTTCTAACTTACAACAGGCTCAATAACAAATAGATATGACAACGTATGTGGCTCAGATTGTATGGACGTTGTCAAG GCGCTAACCGGTAACAAGTCTTTTAACTTGCATTCTTGTGCAGCTAACTTGACCAATGAGCTTACTGAACCAGAATTGGG ATGTGATGATTCAACATGCGCCGAGAGATGAATAAACCGGCAAATGCTCTTGCAAGGATGAGTCTGAGAAATAGGTGAGA ATTCTCAACTTGGAACTCACTCCTACCTGATATGGCAAAGACTTGGAACTCACTCCTACTTGATAATAACAAGTTATCTT TTTCGTTTTGTTTCTG
CDS sequence (LotjaGi6g1v0141200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGACACAGACACCTGAAACAGAAGGTACCAAGGGTGATGCCTCAATAAATCAGTCAGTAAAAGATGAGTCCAACTC CAAGATGGAAGGTTTTAGCAGGGATGAATTGAATTGTGTATTAGTTGAAAAGGAATTGACTGAAGGACAGGTTGGTGCTG GAAGAGGTTCATTTGGAAATGAAGAGAAATCTGCTCCTGTTGGTGATGGGCATTTGACAGTCTTGAAACAAAAGGAGAAA GAACTCATCGATGAAGTAACTGTGAGGACTTCAGAAGTGGAGCATCTTGAACAAGAACTGGAACTGATGAAGGCAGCAGC TGAAATGGCATTTAATAATCAACATTCTGTTGACTTCTACATTGAGCAGTTGAATGAGCAAGTACAAGCAAAAACCAATT ACCTTTCGACTTTAGAGTCAGAGTGGGATACTGTAAGAAAACCCTTGGAAGAGAGAAAGAGAAATCTTGAAGAGTCTCTA TATTCAAATAGTCCAGATGCACAAGCAATGCTCCAAAAGTTGAGAGAAGTTCAGCAGGAAGAGCAGTTCATTTCATCTGA AATTCAAAATAGGGAAGAGGAACATACAAAACTTCTTGCTGATTTGGAGAAGCAGCAGAAAGTAGCATCCAGGAAATCTT ATACTCACCGGATAAAGGAGATTACAAAAAATAGTCGGAAGCAAGATGCTGATATTGAGCGGATTTTAAAAGAAACCAGG GAGGTTCAATTGGAGAGTAATTCTATCCAGGAGCGCTTGCATCGGACATATGCTGTTGCAGATGAAATTGTCTTCAGGGA AGCAAAGAAAGATCCAACAGGACTGCAGGTTTATAGGCTCCTGGTTAGCATCCATAAAGGTTTTGAACAAATATCTGAGA AAATCCTGGCAACTGATAGAATTAGAAGAGAAGTAGCTGAGTATGAAATGAAACTGGCCGCCACAGCTTCCACAAGCTTA GATGTGAGCAAACTTCAAGCTGATCTCGATGTCATTATTAGGGAAAATGAATACCCTGGATAG
Protein sequence (LotjaGi6g1v0141200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METQTPETEGTKGDASINQSVKDESNSKMEGFSRDELNCVLVEKELTEGQVGAGRGSFGNEEKSAPVGDGHLTVLKQKEK ELIDEVTVRTSEVEHLEQELELMKAAAEMAFNNQHSVDFYIEQLNEQVQAKTNYLSTLESEWDTVRKPLEERKRNLEESL YSNSPDAQAMLQKLREVQQEEQFISSEIQNREEEHTKLLADLEKQQKVASRKSYTHRIKEITKNSRKQDADIERILKETR EVQLESNSIQERLHRTYAVADEIVFREAKKDPTGLQVYRLLVSIHKGFEQISEKILATDRIRREVAEYEMKLAATASTSL DVSKLQADLDVIIRENEYPG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 70 | 337 | 268 | 4.5E-91 | ||
| Pfam | 75 | 312 | 238 | 1.3E-49 | ||
| Coils | 93 | 113 | 21 | - | – | |
| Coils | 121 | 141 | 21 | - | – | |
| Coils | 174 | 208 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0141200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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