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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0142100 |
| Transcript ID | LotjaGi6g1v0142100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly(A)-specific ribonuclease PARN; TAIR: AT1G55870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN; TrEMBL-Plants: tr|A0A151S4M2|A0A151S4M2_CAJCA Poly(A)-specific ribonuclease PARN; Found in the gene: LotjaGi6g1v0142100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40998568..41003418) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTTCTTCCTCGCTATCCCTCTTCTAAACCCCGAGCCAGACGAAGAAGAATGCAACACCACCACAGATAACAACGCAA TGAAACCATGGAATCTTCATCTTCCTTCGTCACCACTCTCACGTGCGCTATCACGTGCACTCAGCTCCGCCGCATCGGCG TTTCCCCTGAAGACGGTAACCACCGCCAACTTCGAACCCTCGCTGGTGGATCTCCGGCGCCACGTCCGCTCCTCTGACTT CGTCGCCATCGACCTCGAGATGACCGGCATCACCAGCGCCCCCTGGCGCGAGTCCCTCGAGTTCGATCGCTCCGACGTCC GCTACCTCAAGGTCAGAGACTCCGCCACCAGGTTCGCCGTCGTTCAATTCGGCGTCTGCCCCTTCCGATGGGACCCCTCC AACAACTCCTTCCTCGCTTATCCGTACTCCCTCTCTCTCTTTCCCATTTCTGCTTCAGATTTTGTTAGCAGTTTGGTTCT GATTACTATTGCTGTGGGAAATGGTTTTCTGGTGTTGTTCTGATATGGAAATTTGATCATTGTCAGGTACAATTTCTATG TGTTTCCACGCCAGGAGCTTGCGGGTTTTGGTCCATGTAATGAGTTTCTCTGCCAGACTACTTCAATGGATTTCTTGGCT AAATACCAGTTTGATTTTAATGTCTGCATACATGAAGGTTGCAATTTGTTCCTTTTTCTTTCCTATCATTGTCTTTGTTA TGATGCTAGTTTATAGCAGGGTTGTTAATGGTGGATAGCGTAGTGTAGCGGCAAGCTCAAAAAACACTATTGCGGCGCTA TAGCAGCAAATAGCGGTGAATAGTGGAGTAGTGGTGAACCCCAAGGGTGCTACGCTATAGCGCTATTGCGCCACTATAGC GCGCTATTAAGAAGCCTGGTTTATAGAAGAAATGGACTCTTTGGGACCGATATCGGGGATAAAGGTTCCGGCCTTAGTAC CTGAGATTGGCTTGTATGCTTTATCTATACATGGAAAAACTGCGTGCTTCAATCCTCGGTCTATAACAGTATAACTTATA TTATATGCTTGAATTATGCAATGGAAAATATCTAATATGAAAAGTGATATACGCAGTGCATATTTAGAAATTCTTCTAGA ATTGATTCTAAAGTCATAATCAATTATGGAAAGAAGATTCTGTGAGTAGCTTTCGAATGTCAGAATTGATTCAGAGAAAA AAAGAAGCTGATCCAAAGTTCGAATATGGTAGTAGATGACTTTCAAGGTTATATGCAAACTGAAGGGACTTTTAGGGTCA TAGGAAATTAGAAAATGGTCGAGACATTATAAATGCTGAAAGCCTATAATCAATATTATAGTTACAATTTATGGGGATAT TTTGCTATTGGTTGCTCTTTCAATCATTGGTTCATAGAATAGGTTTTGGTTGTGTGTATAACTCAATCATGTGTTCTATG ATTGCTGTAGTTTGAGAATTTGTACCCTTGGATAATGTCAGGAATATCTTATTTATCCAGAGAGCAAGAAAGGGAAGCAA TAAGGAGGTTGAATTCGACTTACGATAGTGAGAGGCCAGACATTTGTAAATTAAAAGATGTCAGGGACATACCATTGCTC AGCATGGCAGACACTTTGTTCACTGCACGAATGAAAAGTAAGTTCAGTGAATGGCGTGATGGGTTATTACATGAGCAAAA TCAAGAAGACAGAATTCAAGAAATTTCAGAAGACTCAAAAGAACAATTTCAAGTGATGTTCTTTAAGTTGCAGCCTGCTC TTAGGCTTAATGGATTCACCTCTCATCAGCTTAAATTGATTCAGTTGGTAATCTTGTTATTTCTCGTTCCCTCAGCTGAT ATGTTTACATTCTGTCTCTCCTCTTGCGTTGCTATTTTGATTGGATCATCTATCAATTTCCTTTGCTTACTGACATTGTA GTACTGTACATGTATCAAGGTTATACAGTGGCTAAATTTTGCTAATGATAAATTAAAAAATTTCAGGTCATCAGAAAGAA CTTCAAAGATCTTTATTATGTCAGTGTGAACACTGAGGCTTCTGGTTCACAGCAAATTGTTCTATATACAGACTCAAAGG ATGAACTGAACTTAATTATGGTAATAAATCCTCATATTATGTTTAGTCCGTTTTGAATTGTAATGAGCGCTTTAGCATTG CCAATGGTTTTAGGAATTTAATTTTGCCTTCTGCACTTTTGAAGTATGGTGGAGCGCTTAACCGACTGATTCTTTTGATT ACAAATAAAAATGAAAATATGAATTGACCATATATTTGCCTTTTAGTCTAGAATCTGTTGATGGCCAAGTTTTTTTCTCA AAACGGAGCTTAATCCAAATTTTAGTTACAAAAGGACGCAATTAAATATTAAATAATAATGCATCTATGCTCCATTTAAC ATTTAATTTGGCATCTCATGCATAGTATAGGCCAAATACTGATGCTGAAAGATGAAAAAGCTAAAATATAGTGGTCAACA TCTATTGATGCCACAGTACCTTTTTAAATTCTAAAAGAAGAAAGTGTTTGCTAATCTCTTGCAGAAGGAGGTGAAAGATG AAAATCACAGGATGGAAGAAATGAAGATCCAGACTGCAGTTGGTTTTCGTCATGTTATTGATCTCCTTTCATCAGAACAG AAGTTGATAGTTGGCCACAACTGTCTTCTGGGTATCAGCGGCATTTTAAATCCATAACAAGCTATTTAATTTTATCATAC ATAGTTACATACACTGATATTATATAATTCCCATGATACAGATATTGCTCATGTCTACAACAAATTTATCAGACCTCTTC CTGAGACTCCTGAAGAGTTTGTTGCCTCTGTTAACAAGTGCTTTCCAAACATTGTTGATACCAAAATACTCCTAAACACT AATTCTATGCTCCAAGGAAGGATGAGAGGGTCCAGAAAATCACTGGCCTCTGCATTTTCTTTGTTTTGTCCACAAATTGC TGCAGGCTCAGGAAACACTGAGCCAGGTTCACCATCACATGTGAAAGTGGACATTGAAGTTGATGATTCAAGGTTTGACT CTCTTTTTTCTATATTTGGTGGCTATGGAAGATTGTGTTTCTTTTATCTGCATCATTCATTCATGTGAATTAGTTTGCAT GTGATTGTAGTCATACAGTTTTCAACAGTTTCCATACATGATGCAGTTCTTTCCTTTTTATCCCTATCTCTATTTTTTCT TTTCCTGATATCTTCAATACAAGTTTATAAATATTTAAAGTATACACATTTCCTCTTCTTTTTTATTTGAAAATATTTGT ACACTGGTAAATCCTGACAGTCAAGTCTAAAGTATAAGTGTTTTCTTTTGTAGCTTTGTGTTGTCTGCATATCTGCATAT ACTTCTTTCTAATCCTGACAGTCAAGTCTAAAGCATAAGTGTTTTCTTTGTCTACTTTAAATGGAGTAATGTTGCCTTCC ATTTCTTATGTGTTCCAAGCTGCCTCTCATTTATCTTTCACACAAACAAATGGTACATATATTTGCAGATCATCCACCTG GAACCCTGGAGGTAAGCATGAAGCAGGGTATGATGCTTTCATGACCGGATGCGTCTTCACCCAATTATGTAGTGATTTAG GAGTGGATTTTAAACTCCATGAATCTTCAAAAGAATTAGCCCTTAATGAGAAACTACAGAAGTACGTTAATCATCTATAT ATTAGTTGGATGCATGGAGACATTATTGATCTAAGTACTGGTGATAAGGTTGCAGATTCTTCACCGAGCTATAGCCTCAA GAGGCGGTACCCACAAATTTTGTTTGAGAACATTGTTATTATGTGGGGGTTTCCTTCTAAGCTCAAGGCAAATGAAATAA GAAATTGTATATCTCTAGTTTTTGGTTCAAGTTCTGTAGTTTCTATCTACCACTTGGACTCAACTGCAGTGTTTGTCCAG TTTAGCAAAACAAATCTGGTTTCTGATTTTCTTTTATTGAAGGACACCTTAGAGAGAAGTGATGGTCCAATCTTGGTTTT GCATCCGCTGGCAAAACTTTTGGAAGGTGGAAATACATGTGCTGCTAATTATGATGCTTACAGAGAAATTTGTGGTTCAA CCTTATCAGAAAGCCTGTTTGCTGATCAGGCCAAGGCAGTTGGTATAACATGGAAGACCAAATTGATGGAATGCAAGGTA ACATTGGGGAGCGAAGAACATGAAAATCAAAGTGAACAAGGTAATGTGAATACAGCTATGAAGTTTGTAGGAAAGACCAA GCCAAACACAATAGATCAGTTGAGAAATTCACCACCTCATGGGCAGGTCTCACCTTTTGAGATTGAAGATTCTTGTGCCG CAGAAGCCAACTTGTGATTTCTTTTTGGTTTTTGGTTGGGACCAGCTCGCCAACAACAATGACTATTCCGTTGTTGCAGG TGCTCACGCTAAGCAGTAAATAACTGATCACAAAATGTGTTTCATTTTAATGGGCGAGGTTCGAATTCCCGACCTCATGG TCCTGATTTTTGACTAATGATTTTGTAGTCACCTGCATGAGCACACTATTGTATTAAGTTACATTTTTGACATAGCAACC TATAAAGTTAGAAGATGTAGCAATCTTAGATGCATAGGGTCATGCAGATTAAGTCGATACCAGTAAATTTTCTAGTGGGG ATAGCAATTTTTTTTGCGTATCCAAATGTTACTCTATTAAATTTGTTTGTACAGTGTAGTGTAAATAGTTTCTCTTTTTG AAAAATTATTTCCATTATTCTGAAAGTGTTTAGAACTTAGAAGTCAAGGATCCTTTCACTTCGGTTAAATTTTGATTTTT TTTAATTGCACAAATATAATTGTTTTACTATTTTTTTAAACAATTTCCCCC
CDS sequence (LotjaGi6g1v0142100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCATGGAATCTTCATCTTCCTTCGTCACCACTCTCACGTGCGCTATCACGTGCACTCAGCTCCGCCGCATCGGC GTTTCCCCTGAAGACGGTAACCACCGCCAACTTCGAACCCTCGCTGGTGGATCTCCGGCGCCACGTCCGCTCCTCTGACT TCGTCGCCATCGACCTCGAGATGACCGGCATCACCAGCGCCCCCTGGCGCGAGTCCCTCGAGTTCGATCGCTCCGACGTC CGCTACCTCAAGGTCAGAGACTCCGCCACCAGGTTCGCCGTCGTTCAATTCGGCGTCTGCCCCTTCCGATGGGACCCCTC CAACAACTCCTTCCTCGCTTATCCGTACAATTTCTATGTGTTTCCACGCCAGGAGCTTGCGGGTTTTGGTCCATGTAATG AGTTTCTCTGCCAGACTACTTCAATGGATTTCTTGGCTAAATACCAGTTTGATTTTAATGTCTGCATACATGAAGGAATA TCTTATTTATCCAGAGAGCAAGAAAGGGAAGCAATAAGGAGGTTGAATTCGACTTACGATAGTGAGAGGCCAGACATTTG TAAATTAAAAGATGTCAGGGACATACCATTGCTCAGCATGGCAGACACTTTGTTCACTGCACGAATGAAAAGTAAGTTCA GTGAATGGCGTGATGGGTTATTACATGAGCAAAATCAAGAAGACAGAATTCAAGAAATTTCAGAAGACTCAAAAGAACAA TTTCAAGTGATGTTCTTTAAGTTGCAGCCTGCTCTTAGGCTTAATGGATTCACCTCTCATCAGCTTAAATTGATTCAGTT GGTCATCAGAAAGAACTTCAAAGATCTTTATTATGTCAGTGTGAACACTGAGGCTTCTGGTTCACAGCAAATTGTTCTAT ATACAGACTCAAAGGATGAACTGAACTTAATTATGAAGGAGGTGAAAGATGAAAATCACAGGATGGAAGAAATGAAGATC CAGACTGCAGTTGGTTTTCGTCATGTTATTGATCTCCTTTCATCAGAACAGAAGTTGATAGTTGGCCACAACTGTCTTCT GGATATTGCTCATGTCTACAACAAATTTATCAGACCTCTTCCTGAGACTCCTGAAGAGTTTGTTGCCTCTGTTAACAAGT GCTTTCCAAACATTGTTGATACCAAAATACTCCTAAACACTAATTCTATGCTCCAAGGAAGGATGAGAGGGTCCAGAAAA TCACTGGCCTCTGCATTTTCTTTGTTTTGTCCACAAATTGCTGCAGGCTCAGGAAACACTGAGCCAGGTTCACCATCACA TGTGAAAGTGGACATTGAAGTTGATGATTCAAGATCATCCACCTGGAACCCTGGAGGTAAGCATGAAGCAGGGTATGATG CTTTCATGACCGGATGCGTCTTCACCCAATTATGTAGTGATTTAGGAGTGGATTTTAAACTCCATGAATCTTCAAAAGAA TTAGCCCTTAATGAGAAACTACAGAAGTACGTTAATCATCTATATATTAGTTGGATGCATGGAGACATTATTGATCTAAG TACTGGTGATAAGGTTGCAGATTCTTCACCGAGCTATAGCCTCAAGAGGCGGTACCCACAAATTTTGTTTGAGAACATTG TTATTATGTGGGGGTTTCCTTCTAAGCTCAAGGCAAATGAAATAAGAAATTGTATATCTCTAGTTTTTGGTTCAAGTTCT GTAGTTTCTATCTACCACTTGGACTCAACTGCAGTGTTTGTCCAGTTTAGCAAAACAAATCTGGTTTCTGATTTTCTTTT ATTGAAGGACACCTTAGAGAGAAGTGATGGTCCAATCTTGGTTTTGCATCCGCTGGCAAAACTTTTGGAAGGTGGAAATA CATGTGCTGCTAATTATGATGCTTACAGAGAAATTTGTGGTTCAACCTTATCAGAAAGCCTGTTTGCTGATCAGGCCAAG GCAGTTGGTATAACATGGAAGACCAAATTGATGGAATGCAAGGTAACATTGGGGAGCGAAGAACATGAAAATCAAAGTGA ACAAGGTAATGTGAATACAGCTATGAAGTTTGTAGGAAAGACCAAGCCAAACACAATAGATCAGTTGAGAAATTCACCAC CTCATGGGCAGGTCTCACCTTTTGAGATTGAAGATTCTTGTGCCGCAGAAGCCAACTTGTGA
Protein sequence (LotjaGi6g1v0142100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPWNLHLPSSPLSRALSRALSSAASAFPLKTVTTANFEPSLVDLRRHVRSSDFVAIDLEMTGITSAPWRESLEFDRSDV RYLKVRDSATRFAVVQFGVCPFRWDPSNNSFLAYPYNFYVFPRQELAGFGPCNEFLCQTTSMDFLAKYQFDFNVCIHEGI SYLSREQEREAIRRLNSTYDSERPDICKLKDVRDIPLLSMADTLFTARMKSKFSEWRDGLLHEQNQEDRIQEISEDSKEQ FQVMFFKLQPALRLNGFTSHQLKLIQLVIRKNFKDLYYVSVNTEASGSQQIVLYTDSKDELNLIMKEVKDENHRMEEMKI QTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHVYNKFIRPLPETPEEFVASVNKCFPNIVDTKILLNTNSMLQGRMRGSRK SLASAFSLFCPQIAAGSGNTEPGSPSHVKVDIEVDDSRSSTWNPGGKHEAGYDAFMTGCVFTQLCSDLGVDFKLHESSKE LALNEKLQKYVNHLYISWMHGDIIDLSTGDKVADSSPSYSLKRRYPQILFENIVIMWGFPSKLKANEIRNCISLVFGSSS VVSIYHLDSTAVFVQFSKTNLVSDFLLLKDTLERSDGPILVLHPLAKLLEGGNTCAANYDAYREICGSTLSESLFADQAK AVGITWKTKLMECKVTLGSEEHENQSEQGNVNTAMKFVGKTKPNTIDQLRNSPPHGQVSPFEIEDSCAAEANL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SUPERFAMILY | 31 | 472 | 442 | 3.48E-57 | ||
| PANTHER | 32 | 666 | 635 | 1.7E-189 | – | |
| PANTHER | 32 | 666 | 635 | 1.7E-189 | – | |
| Gene3D | 32 | 182 | 151 | 3.3E-42 | ||
| Pfam | 33 | 461 | 429 | 2.2E-89 | ||
| Gene3D | 293 | 511 | 219 | 1.4E-47 | ||
| Coils | 298 | 321 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0142100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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