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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0142700 |
| Transcript ID | LotjaGi6g1v0142700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT5G55730.1 FASCICLIN-like arabinogalactan 1; Swiss-Prot: sp|Q9FM65|FLA1_ARATH Fasciclin-like arabinogalactan protein 1; TrEMBL-Plants: tr|M5WIG2|M5WIG2_PRUPE Uncharacterized protein; Found in the gene: LotjaGi6g1v0142700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41220979..41223827) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTAAAGCAGCAACATATCTTATCAAATAAGATTTGGAGACAATTTAAACAAAATTAAATCTTCTTCGCTGGATATAT TTCCAGATATATATACGTTCCTTACCAAATGAGATCCTTAACAACTCTTTGTCACTACTCATTTCCAAACAGTGGCATAT ACCGTAATAATCTCAAAACCCAAGCCCAGTGTCGTTCAACTACCTTATTAGTACCTCTTTTGCCTCCCCTTTCTCCACTC TACTTCACCCACCACACTTCTTCTCCGACTCAGATCTCACCTCGACAATGCAGCTGCTCCGCCCGGCAACCATGGCGGCT CTCGCGGCAGCGCTGCTCCTCCTCACCATGGCTTCTACCACCACAAACGCCCACAACATCACCGGCATTCTCGCCAAGCA CCCCGAGTTCTCCACCTTCAACCACTACCTCACCCTCACCCACCTCGCCGCCGAGATCAACCAACGGACCACAATCACCG TCTGCGCCGTCAACAACGCCGCCATGGACGACCTCCTCTCAAAACACCCATCAATCACCACCGTCAAGAACATCCTCTCC CTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCCCTCGCCGCCACAATGTA CCAAGCCACCGGCACCGCCCCGGGCTCCGCCGGATTCGTCAACATCACCGACCTCCGCGGCGGGAAAGTCGGATTCGGCG CCGAGAACAACGACGGCACCCTCTCCGCTTCGTTCGTCAAATCCGTAGAGGAAATCCCCTACAACATCTCCATCATCCAG ATCAGTAAGGTTCTTCCCTCCGCCGCAGCAGAAGCCCCTGCACCCGCACCCGCTCAGCAGAATCTCACCGCCATTATGTC CAAGCACGGTTGCAAGATCTTCGCCGACACTCTCTCCGCCACGCCGGACGCGTACTCAACCTTCACCGACAACCTCGACG GTGGGTTAACCGTTTTCTGCCCCGTCGACGACGCATTCAAGGCGTTCCTACCCAAGTTCAAGAACCTCACCGCCGCCGGG AAGGTCTCGCTGCTGGAGTTTCACGCTGTTCCGGTTTACCAGTCCATTGCTACGCTGAAATCCAGCAATGGGGTTCAGAA CACGCTCGCCACCGACGGCGCCAACAAGTACGACTTCACCGTACAGAACGACGGCGACAAGGTCACGCTCAAGACCAGGG GAGTCACCGCCAGGATCATCGACACGCTTATCGACGAGCAGCCCCTCGCGATCTTCGCCATTGACAAGGTTCTACTCCCC AAGGAGCTCTTCAAGGCTGCGGAGGCGCCGTCGCCTGCTCCGGCGCCGGAGCCTTCTGCTGCGGACGCTCCTAAGGCGGC GAAGAAGAAGAAGAAGCCGAAGACGAAGGCGGCTGATGCACCCGCAGATGATAGCTCCGACGCGCCTGCTGATTCGCCGG ATGATGCCGCCGATCAGACCGCCGACGACAGTAACGGCGCCGTTAGGTTTGACGGCGGCGGCGTTGTCATGGGTTTGGCT TTAATGGTTGGTTTTCTACTGCTGTGAACTTAGAGTAACACCGTAACTCGACTTTTACTTATATTTATTTGTTTTTTTTT TTTGAGATATTTCTAGCTTTTTCTTTTAGTTAGGAAAAAATAAAAGGAATTTTATATGCTATTCCTTTTTATTTTCCTTT CTTTTTTATAATTTTGGGTTGCAGCAGGTGTGTGGATTTTTATTTTTATCTGATTTTTATTATTGTACTTGATAATTGTT GTAATTTTGGTGGTTTGAGCTGAAAATGTTAATGTTAAGTGTTAACATTTGTTTACTTTTTAAGTTTCTTTTCTCCTTTT CCAATTCATGATAATGTAGCAGTTTGTTTGAGATTTGCCATGCAACAAATGCAAGTGCTGTTGACATTAATGCAAGTATG ACATGTGAAGTTGAAAGTTGGAACTTTGTAATTAGTTGAGCGCTTTTAGGTTGATTTGTGATTGTGGTTATGATAGGGAT GGGATGAAAATGAAATCATGCAACCAAAGAGTACTCAAACTCTTCAACACCACACTTTTGATGATCACATAATTGACGAT CATCTTTTCAACGACCAAGATTCACCTTAGATTGACTACTCTCTCCGATCATAGTCGCCCTAGAAAGAGATTTGTGTGAT CGTCCCTCTGCGACTACTACCTAAATATGAACCCAAGGTGTCTGCGCCACCTCACCATCTTCCTCAACTTAGCAAAAGGC GTAGGGAGCTCAAGAGCCATGTCTCGATCACGAGGAACCCCAACCATCAGATCTATGAAGATAGTAGAGAGCTCAATGAC TAAGATTCACCTAGAATAAGGTTCAAGCGGATACACAAATCTTATCATGTCTTAGAGAAGTTTCCAAACCACTAATTTGG CATCAAATTGTCTTTACAAGAACCCCTCATGAGCTTGATGACGGTATACGATCTCAGGATCCTTTCTTCCCTCTCCTTAA GCTCTCCTCGATCCCTCCCACACTAGAGTTCAACCATTCCTTTTCAATGATTTGATCGACCCGATCAATAGACTTAAAAT TGGGGTGTCTTTCTTTCTTTTCTTATTTATTTTTTGAGAATTTTTTTTTGTTGCAAAGTTGGAACCCCATGTGTTCTTCG AATTTCCTATTTCGTCAATAGTATAATTTATTTGTGTGGATGTGTTTGGGAGAAGCTGTGCTGTTTTCTAACTTGTATCC TGGATTTACTTGATTCCTTGGCATCAACTTCAAGTTAGGTGAGAATCTGTTTTCTAACTTGTATCCTGGATTTACTTGAT TCCTTGGCATCAACTTCAAGTTAGGTGAGAATCTAAGTCAAAATGGAGA
CDS sequence (LotjaGi6g1v0142700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCTGCTCCGCCCGGCAACCATGGCGGCTCTCGCGGCAGCGCTGCTCCTCCTCACCATGGCTTCTACCACCACAAA CGCCCACAACATCACCGGCATTCTCGCCAAGCACCCCGAGTTCTCCACCTTCAACCACTACCTCACCCTCACCCACCTCG CCGCCGAGATCAACCAACGGACCACAATCACCGTCTGCGCCGTCAACAACGCCGCCATGGACGACCTCCTCTCAAAACAC CCATCAATCACCACCGTCAAGAACATCCTCTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGAT CACCAACGGCACCGCCCTCGCCGCCACAATGTACCAAGCCACCGGCACCGCCCCGGGCTCCGCCGGATTCGTCAACATCA CCGACCTCCGCGGCGGGAAAGTCGGATTCGGCGCCGAGAACAACGACGGCACCCTCTCCGCTTCGTTCGTCAAATCCGTA GAGGAAATCCCCTACAACATCTCCATCATCCAGATCAGTAAGGTTCTTCCCTCCGCCGCAGCAGAAGCCCCTGCACCCGC ACCCGCTCAGCAGAATCTCACCGCCATTATGTCCAAGCACGGTTGCAAGATCTTCGCCGACACTCTCTCCGCCACGCCGG ACGCGTACTCAACCTTCACCGACAACCTCGACGGTGGGTTAACCGTTTTCTGCCCCGTCGACGACGCATTCAAGGCGTTC CTACCCAAGTTCAAGAACCTCACCGCCGCCGGGAAGGTCTCGCTGCTGGAGTTTCACGCTGTTCCGGTTTACCAGTCCAT TGCTACGCTGAAATCCAGCAATGGGGTTCAGAACACGCTCGCCACCGACGGCGCCAACAAGTACGACTTCACCGTACAGA ACGACGGCGACAAGGTCACGCTCAAGACCAGGGGAGTCACCGCCAGGATCATCGACACGCTTATCGACGAGCAGCCCCTC GCGATCTTCGCCATTGACAAGGTTCTACTCCCCAAGGAGCTCTTCAAGGCTGCGGAGGCGCCGTCGCCTGCTCCGGCGCC GGAGCCTTCTGCTGCGGACGCTCCTAAGGCGGCGAAGAAGAAGAAGAAGCCGAAGACGAAGGCGGCTGATGCACCCGCAG ATGATAGCTCCGACGCGCCTGCTGATTCGCCGGATGATGCCGCCGATCAGACCGCCGACGACAGTAACGGCGCCGTTAGG TTTGACGGCGGCGGCGTTGTCATGGGTTTGGCTTTAATGGTTGGTTTTCTACTGCTGTGA
Protein sequence (LotjaGi6g1v0142700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLLRPATMAALAAALLLLTMASTTTNAHNITGILAKHPEFSTFNHYLTLTHLAAEINQRTTITVCAVNNAAMDDLLSKH PSITTVKNILSLHVLLDYFGAKKLHQITNGTALAATMYQATGTAPGSAGFVNITDLRGGKVGFGAENNDGTLSASFVKSV EEIPYNISIIQISKVLPSAAAEAPAPAPAQQNLTAIMSKHGCKIFADTLSATPDAYSTFTDNLDGGLTVFCPVDDAFKAF LPKFKNLTAAGKVSLLEFHAVPVYQSIATLKSSNGVQNTLATDGANKYDFTVQNDGDKVTLKTRGVTARIIDTLIDEQPL AIFAIDKVLLPKELFKAAEAPSPAPAPEPSAADAPKAAKKKKKPKTKAADAPADDSSDAPADSPDDAADQTADDSNGAVR FDGGGVVMGLALMVGFLLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 6 | 418 | 413 | 3.9E-203 | – | |
| PANTHER | 6 | 418 | 413 | 3.9E-203 | ||
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| Gene3D | 27 | 173 | 147 | 1.1E-6 | ||
| ProSiteProfiles | 28 | 176 | 149 | 12.287 | ||
| Phobius | 29 | 419 | 391 | - | – | |
| SUPERFAMILY | 34 | 176 | 143 | 4.45E-18 | ||
| Pfam | 39 | 115 | 77 | 5.4E-6 | ||
| SMART | 64 | 179 | 116 | 0.67 | ||
| Gene3D | 174 | 332 | 159 | 1.3E-11 | ||
| SUPERFAMILY | 185 | 332 | 148 | 1.57E-20 | ||
| ProSiteProfiles | 189 | 329 | 141 | 12.976 | ||
| Pfam | 202 | 331 | 130 | 2.2E-15 | ||
| SMART | 228 | 332 | 105 | 1.3E-20 | ||
| MobiDBLite | 339 | 399 | 61 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0142700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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