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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0143000 |
| Transcript ID | LotjaGi6g1v0143000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | eukaryotic translation initiation factor 4G; TAIR: AT1G31250.1 proline-rich family protein; TrEMBL-Plants: tr|A0A072UXB9|A0A072UXB9_MEDTR Uncharacterized protein; Found in the gene: LotjaGi6g1v0143000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41254051..41255322) extracted from Lotus japonicus Gifu genome v1.2.
GAATAATCTAACCATAGCAGGTCACACCACTGCCATCAACGGCTAAATTACTGGCTATAGTCAGTGAACCATCGCAACGG TCACATTTGAGTTTCTTCACACTCCCAAACTCATCCTATATATGTTCCCCAACAAGGCAACGATTCAATTCAACTCTGAA CCAACATACTTTTCCACAACACAAACTCACATCCTTATTTAACGTTGTTGTTGTTGTTGTTGTTGCATTTTCCACTTCCA CAAACACAGGAGATTCTCTTCAATCTTCATCATCATCATCGTACTTTCCGAATCCTCAAAAACACCGAAAATGAATAGAT TCCTTCCACTCTTCGTGGTTACTCTGCTTTTGGCCACTGTTTTTGTTCCGATTCACGCCGACAATGCTCCTGCTCCTTCA CCCAAGTCATCATCTTCGCAGCCGCCGGCGGCGAACCCACCGTCTACGGCGACTCCTCCCTCACATTCTCCGGCGGTTCC TAAAGCATCCCCTGCAAAGTCTCCGACTATATCGCCGCCTTCACAAACTCCGGCGGTTTCTCCAACTGGGTCTGTCACGC CGCCGGCGAAGTCTCCGGCTGTTCAGCCGCCGTCTTCGGTTTCTCCGGCTTCCAGCCCGTCCAACAATGTGTCTTCCCCA CCGCCGGTGCCATCCCCAGCGACTCCTCCGCCGACGGCTGAGACTCCGGCGGTGTCTCCCGTGAGTAGTCCGGTGGCTGC TCCTACGGTGGCAAAGGGCCCGTCGGCTTCTTCTTCTCCACCAGAGGCTTCTGCAGGAGTTCCTACGAGTTCGGCTACCC CGGCAGATGCACCGGTGACGACGATTCCATCGAGCAGCACTGCGCCAGGAACTGCGCCGGCGAGTTCTTCGCCGGAATCA TCTCCGGGCGCTGCCGATGATTCGGGTTCAAGTTCTAATTTCGGGGCTCCGGGTCTTTTGTGTGGCATGGCTCTTTGGGC TGCTTTGGCTATATGAGGCAAAGGCGTTTTGCAATTTTTTTTTGTAATTTTTTTTTTGTTTTCTTCTTGTGTTGGCATTC TTTGAATAATTATTTGTTTTATTATTACCTCCACTTTATTGTTATTTGTTTTCAATTTTTAGTTTGATAGGTTGGATTCT TATTCATTAAATTGTAACATTTTTTGCCAAGATCTCATTTGTATTAAAGCGATTTCTTGCTCATGGTTTTCATTTGAAAA GGGATATATTTCTTATTAAAAAAAAGGGATATATTTCACCGCGACCTTCGACTTGAAATTGCACCAATTTGC
CDS sequence (LotjaGi6g1v0143000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAGATTCCTTCCACTCTTCGTGGTTACTCTGCTTTTGGCCACTGTTTTTGTTCCGATTCACGCCGACAATGCTCC TGCTCCTTCACCCAAGTCATCATCTTCGCAGCCGCCGGCGGCGAACCCACCGTCTACGGCGACTCCTCCCTCACATTCTC CGGCGGTTCCTAAAGCATCCCCTGCAAAGTCTCCGACTATATCGCCGCCTTCACAAACTCCGGCGGTTTCTCCAACTGGG TCTGTCACGCCGCCGGCGAAGTCTCCGGCTGTTCAGCCGCCGTCTTCGGTTTCTCCGGCTTCCAGCCCGTCCAACAATGT GTCTTCCCCACCGCCGGTGCCATCCCCAGCGACTCCTCCGCCGACGGCTGAGACTCCGGCGGTGTCTCCCGTGAGTAGTC CGGTGGCTGCTCCTACGGTGGCAAAGGGCCCGTCGGCTTCTTCTTCTCCACCAGAGGCTTCTGCAGGAGTTCCTACGAGT TCGGCTACCCCGGCAGATGCACCGGTGACGACGATTCCATCGAGCAGCACTGCGCCAGGAACTGCGCCGGCGAGTTCTTC GCCGGAATCATCTCCGGGCGCTGCCGATGATTCGGGTTCAAGTTCTAATTTCGGGGCTCCGGGTCTTTTGTGTGGCATGG CTCTTTGGGCTGCTTTGGCTATATGA
Protein sequence (LotjaGi6g1v0143000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRFLPLFVVTLLLATVFVPIHADNAPAPSPKSSSSQPPAANPPSTATPPSHSPAVPKASPAKSPTISPPSQTPAVSPTG SVTPPAKSPAVQPPSSVSPASSPSNNVSSPPPVPSPATPPPTAETPAVSPVSSPVAAPTVAKGPSASSSPPEASAGVPTS SATPADAPVTTIPSSSTAPGTAPASSSPESSPGAADDSGSSSNFGAPGLLCGMALWAALAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 221 | 198 | - | – | |
| MobiDBLite | 26 | 206 | 181 | - | – | |
| PRINTS | 27 | 39 | 13 | 2.5E-11 | – | |
| MobiDBLite | 32 | 56 | 25 | - | – | |
| PRINTS | 39 | 60 | 22 | 2.5E-11 | – | |
| PRINTS | 63 | 79 | 17 | 2.5E-11 | – | |
| PRINTS | 81 | 98 | 18 | 2.5E-11 | – | |
| PRINTS | 99 | 124 | 26 | 2.5E-11 | – | |
| MobiDBLite | 105 | 127 | 23 | - | – | |
| MobiDBLite | 142 | 205 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0143000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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