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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0143100 |
| Transcript ID | LotjaGi6g1v0143100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein, putative; TAIR: AT5G55670.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B; TrEMBL-Plants: tr|I1KYJ6|I1KYJ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0143100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41286214..41292441) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTATTGAAGGAAAATAAAATGACAAAAAGGATTAGATAGATTAGTTGCCATTTGCCAACTACTTGTCATATTAGGGT TTGGCTTTCCCTTCTTCTTCTTCTTCCTCAGCATCGCATGCCCTCTCTCTTCCTGGTAAGATCTCTCTCTGTCTAAACGC TGCGTTTTGATCCACCTCTGTTCTTCATCTTCAATTTCACTTTTCACACCAAACCCTAAATTCAATTTTCAATTTGGGGT TGTGCAGAACAAAGGGAAGGTGGTCGGAAAAACCTAACAATGGAGGAAGGTGAGGGCGGAGATCCCATGGATCAGTTCCA CCGTAACGAAGCTATATCCGCCGTTGCCGACGACGGGTTTTTGGCTGAGGAGGACGATGATTACGAGGACCTTTACAACG ATGTCAACGTTGGTGAGGGGTTTCTCCAGTCGTTGCGGAAGAACGAGGATTTGGGGCCTAAGAATGATGGAGGTGATGAT AAGAAGCCGCAGTCGGGTCCGGTGATGCAAGATCCAGGTGGGGTTTCGATTCCTGGTGTCGGTGGGGAGGGTCCGGGTAA CGGTGCTGGAGGTGGTGAATCGAGGGTTCCTCCTGGGAGAGTTGATGGGTTTCAGAATCAGGGGTTTAGAGGGAATAATG GTGGATCGGGTTCGGCGGCGATGGGGGGTGGAGGTGGTATGAGGATTGAATTAGGGCAACAGTCTGGGAAATTGAGTGAG ATTGAGGAGCAGGGTGGTGGAAATGATGGTGTTGGAGTGCAGGGTATAGGGCAGCAACCGATTGGTGGTGGAAATGAGGG TTTGGTGAGACAAGTTCAAGGTGTTGGTGGAGGAGGAGGAGGAAACCTCAACAGGGCTGGTGGAAATGGGGTTGGGAATA GTGTGAGTGGTGTTAATACTGGAGGAGTTGGAGTTGGAGTTGGAGTTGGAGTTGGAGTTGGGATTGGAGCTGGAGTTGGA ATTGGAGCTGGAGTTGGGGGTGGAGGTGGAGCTGGTATGGCTGGTGGGGGGGGTGGTGGTGGTGGTACTATACTATTTGT GGGTGATTTGCACTGGTGGACTACTGATGCTGAGCTGGAAGCTGAGCTTTGTAAGTATGGGCAAGTAAAGGAGGTGAAGT TTTATGATGAGAAAGCCAGTGGGAAATCCAAAGGGTATTGCCAGGTTGAGTTCTTTGAAGCTTATGCTGCAACTGCGTGC AAGGATGGAATGAATGGGCATGAGTTTAATGGGAGGGCTTGTGTTGTTGCTTTTGCATCACCTTTTACTGTTAAGAAAAT GGGAGAGGCTCAGTTAAGTAGGAATCAACAGATGAACCCAACTACAGCTACCCCAGGAAGGAGGGGGCCGACTGATACGG CGGCTAAGCCAGGTGGTAGTAATATTGGCACTGGTGGTAACTATCAAGGTGGAGATGGCAATAGAGGTTATGGAAGAGGT AACTGGGGCAGAGGGAATAATCCTGGTATGGGGAATAGAGGGCATGTTAATCAAATGAGGAATAGGGGCGGTGGGATGGG TGGTAGAGGTATAATGGGTAATGGTGGAAATGGATTTGGACAGGGTATGGGTGCTACTCCGCCTCTGTTGCCTCCACAGT CAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGGCCAATGGGTAGAATGGGCAGCTATGGAGGCTTTCCTGGTGCT CCTGCACCTCCATTCTCTGGGATTTTACCTTCATTCCCAGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCAGC CTTTTTTGGTAGAGGTATGCATATGAATGGTATGGGGATGATGCCCACATCAGGTATGGATGGTCCTAATATGGGAATGT GGTCAGATCCAAATATGGGTGGATGGGGTGGTGAAGAGCCTGGTGGTGGCAGGGCTGGAGAGTCAAGTTATGGGGAGGAA GCTGCATCAGACCATCAGTATGGTGAGGTGAATCATGATAGAGCTGGTTGGCCTAATGCTGCAAGGGATAAAGATAGAGG ATCCGAAAGGGACTGGTCTGGTTCTTCTGAGCGAAGGTACCGGGATGATAGAGATCAAGGGTATGAGAGAGATGCACCAA GAGAAAAAGAGATGGGGCACGACCAGGAATGGTCGGAACGAAGGCATCGTGATGATAGAGAAATTGGCCGGGAACGATCT AGGGACCGGGACCGTGAACGATCTCGAGACCGTGACCGTGAAAGGTCTCGTGATCGTGAGAGAGACAAGTACAGGGAAGA TAGGGAAAGATATGCAGATCATCATCATAGGCACAGAGATCGAGAAGGAGACCATGATGATGAGTGGGAACGGGGACGTT CATCTAGGACTCACAGCAAATCTCGATTATCGCAGGAGGAAGAACACCATTCTAGGCCAAAAGATGCTGATTATGGGAAG AGGAGGCGGCTTACCTCTGAGTAACTCTTCCATTTTGGAAGGAAAGAATAGTATATGAAAAATAAGGATTTGTCATGGTG GTTTCGATTTTGTGATTGTGCTTCTCTGATCCAGAAGTCGTTGAGCAGCTGTTTTATTTCAATCACTTTGTTCTTATTGC TTCTTGTCAGGAGTATGGTTTTGTTCTCCTGTGATCAAAGGTTAGTTTTAAGATTGATTGCTTATCTAATTATGGTATAT ATGATTCTGTTTTAGTTTATTTGTGATGACTGCTTCCATGATTTAAATAGTCAGATAGATAATGAATGTCTGTCAATATC TAATTTACAGGTTAAATACGAATTAAGTATCTATTATATATAAGTTTTACTGTTTTGAATTTGTAATTTTCGTTCTTCCA TTGTGTAGTTAAAATGACTGTATAGTATTTTTTTCACGTGAGCTCCTTTTTTTATACAATCCCCTGTGCTTAGTATTCTG TAATGAGTATTACTATCCCATTGTTGACATATAGTGGATATGATTATCTTTCCTGATTTGTTGAGGGCCAAGCATGTCTT CTTGTTAAGACCAGGTTTCTGTTTGACTATTAGTGTCTGGTTGAAACGGAAGTCTGAGTGTCATCTGCTAAAAACTTTGC GGTTATCAAGAGTTGTCTTCTGTTATTAAGCAACCTAAAGGAGTTAAAATCTGGAGTCAGCTGTGCATATGATCAATCTA AGTTATGTATCTTCTATATGTGCATGCTGGTTATTAGTTTGCTTAGAAACTCATTGCTGCTGCTTCCTTCTCCAATTAGG TGTCTAAATATAATGCCATATTATGTGGTAGCTGTGCACTAGTTGAATTCATCTTCGATATATCCACAATCACTTTCTCT TTCAAGTTTCATCCCATTTCCACCATTTTTCTTCTTATCTTTCTCTTCTTTTCCTATTGCATTACCCATCATCTTTGTCA CTTTTATCTCTTCTATTCATGTCTCTCTCCCTAAAGTGGGAGTGGAATGGGGTAGATTTTTTTTCTGTTGAATATGTGAT CATATGAAAGTCCTATTTGTGGTTTTGGTAACAAGTTTGCCAGGCAGTTCGTTGCAGCTGTTAAATAAACCCTCCCACTT CCCCTTTTTTGTAATTGAACCATGTAAGTTAATGCTCTAATGTGTGGTAGATCTAAAAGTTTTAAATAGGTGATCAATTG ATCATACTGAAATCTGTTCAGTGTTCATTAGTGGGTTATTTGTCTGTGTTTCCATATATTAATGGTTACATTTCTTTAAG TGAAGAACTTGTAATGATTTTGTGGCAAGTGTATGATATTTAAATACACACACTATCTTTTCTGGAGATTATTAACCTTC TTTTCTTCTTCTAAAAACTTTAGTTTGTTTCACAAGAATTTTAATCTGACTGCTTCCTTCATGAAATATACATTTCAACT CTTTTTTATGTCTTTGTATAATTTAAAGCCATACATGTGTAGAAGTACTGGAGGATGAAATGCTGGGTTGAGCCATTCCC AAATTATTTTTATTTAATATTTCCAAGGAAAAGTTACATTTATTGCTAGGGTCTAAAAAAACTTAGTTCTAGTTGTCCTG TAATAGAAGTGTGCAGTTTACGTGTGGTGTTTATATAGTTCTGCTTACTCCCTCATCCCAAAACATAAGAATTTTCTAAT GTGCCGTTTAACAGAATTGAGATAGTTCTCTTTTTTACTTTGTATGAATTTAAACCCGTTTTGATTTATTTGATAATGCT TTCTGAACTGCAACCATTATTGTTATGGGCTTCTATGTTATGCAGGGACAATTGTTTTGAGAAAGGAAACCGTTCATTCA GACTCTGGGTTGCTTTGGGGATCAAGTGCCATCAAGATTGTAGAGCCAAGTCATGACAATCCTTTTTCTCTTAAATTCAG AAGTGGAACATTTGCTATGAAGATATTCGCTTTTGATTTGAATTTATATTTTTATTAGCTCATGATTAAACCGATCTTGT TGATGTAATGGGTTTAACTTGCTGATGTCTGAAATGCAGACTGTTTAGAACTATTGTTTGAATGATGTATTAGGATTTAG TAGAGGATGTTGATATGTGCCGTTTTTTATTGGCTCTTTGTTGTATCATTTTTTCCCACCTTTCTTTTTTGATGTTTTCT GCCTAACACTTTGTTAGTATACCGGCCTAGCATGCAAATTTTGTGTATGATGTAGAGAGCTAACCATTCAATTACTGTAA TTCTAAGCTGTAGAATTGTATATAACACGTTTCCATGTATATATTGATATGCATTTTCTGTTGTAAGGTACAATCCATCT CCAGTTTTGTTTTATGGTCTTTTCTTATTTACAACTAGTCAAATGGAATTATTTGAGAATTGGATTTTGAGGTGTCTCTT GTCACTTTTTTTGTTATGTTCTAATGCTTAGTCTTTTTGGTGGAGTAGGATGCCTGGATTCTCCACTCTTTACAGAGCTT ATTTTGAACAAAACCAATGTTACTTTTGTAGTTGCATCTTCTTCCACTTTTTACTTACTAAATAGGGATTGAGTTTGCTC TCAAATCCATTGTAATGGGATCTATTTTTGCCCCTGCCTATCTTTTCAGGAGCAATTTCTGTAACCAAGTATTTATAGAT GCTGCCATTAGAAATTCTGAATGTATTAATACAATAATTATTTTGAAGACATGAACATGGTTTGATATTATATTTAGTTT TTCATGCTGCTATAGAGATCAGTCATTTTTCCTTTTGGCATTTATTTATTGTTTACTCTTGTTTATTTTATGTTTGTTTA AAACGGTTTTATAGAAAAATAAGGAAAACCATTTATTATTTGCTAACCTTTCTTTGAGCTCAATGATGTAATACGATTCA TATTGCCTGATCTCACTTAGTGGGATAAAACTTTTGTTGTTTTATTTGCTAACCTTTCTTTACGCCTCAAAGTGGATGGA ATTTGCTGTATAGCTTCTCCTTAGTTTTTCTATTGTCAAGACAGCTTCTCCTTATTGATTGTGGGACAATCTATCATGAC AGTTTCTGATGAAGTGTGAGCTAACTCAATTTGTATTTTTAGGGGTTTCATTGTGTGAATTCAAATTAATGTGTACTAGA GATTTTATGTGTGCCATGTACGGGCAGATAGAGTTTGGTGTTAGATGATATTTGTTGATTATCTTAGTTTATGTTAATTG TGCTATGAAGACATTTACAGCTACAAAACCACCCACGCATAAGGACATATTGTGTGCATGATATGAACAATGATATCTCA TTTAAATTATAAATATGGACATTAACAATTTTAATATCAATCGAAATTGTTCCTTATTATCAAATAGGATCTTCGAAGTG GTTCCTCTGTGGCTGAAGTTCAGACCCAGGAACTCAACGTTTTTCCTCACTGATCTCGATGATTGGGTGTGGCACAACAT TAGTGCCCATACCAGCGGGTCTCCCCATGGCACGTCTTGTTTGGCAATCTCCTGTGGAGCATTTGGACAAACAGAAACGC TCTGATCTTCCAAGGAAAACCTTTCTCCATCCCCAATACATTAGTCGTGACACAACACTTGGCGTCGGGTTCAGCAGATA GCTTCACCACTAGCGGACCCAACCTAGGCTCTCCTAGCTACTCCCACGTCCTGATAGGGTGGGAATGTCCACCACTTGGA TGGAGAACGTAGATGGCTTAGTGATGGGGATTAATGGATTAGCGGGATGTGGAGGAGTCTGCCGGGATGCCTCAGGAAAG TGGTTACAAGGATATTGCAGAAACCTGGGGTCATCAAATGTATTGGTAGCAGAATTCTAGGGGATACT
CDS sequence (LotjaGi6g1v0143100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGGTGAGGGCGGAGATCCCATGGATCAGTTCCACCGTAACGAAGCTATATCCGCCGTTGCCGACGACGGGTT TTTGGCTGAGGAGGACGATGATTACGAGGACCTTTACAACGATGTCAACGTTGGTGAGGGGTTTCTCCAGTCGTTGCGGA AGAACGAGGATTTGGGGCCTAAGAATGATGGAGGTGATGATAAGAAGCCGCAGTCGGGTCCGGTGATGCAAGATCCAGGT GGGGTTTCGATTCCTGGTGTCGGTGGGGAGGGTCCGGGTAACGGTGCTGGAGGTGGTGAATCGAGGGTTCCTCCTGGGAG AGTTGATGGGTTTCAGAATCAGGGGTTTAGAGGGAATAATGGTGGATCGGGTTCGGCGGCGATGGGGGGTGGAGGTGGTA TGAGGATTGAATTAGGGCAACAGTCTGGGAAATTGAGTGAGATTGAGGAGCAGGGTGGTGGAAATGATGGTGTTGGAGTG CAGGGTATAGGGCAGCAACCGATTGGTGGTGGAAATGAGGGTTTGGTGAGACAAGTTCAAGGTGTTGGTGGAGGAGGAGG AGGAAACCTCAACAGGGCTGGTGGAAATGGGGTTGGGAATAGTGTGAGTGGTGTTAATACTGGAGGAGTTGGAGTTGGAG TTGGAGTTGGAGTTGGAGTTGGGATTGGAGCTGGAGTTGGAATTGGAGCTGGAGTTGGGGGTGGAGGTGGAGCTGGTATG GCTGGTGGGGGGGGTGGTGGTGGTGGTACTATACTATTTGTGGGTGATTTGCACTGGTGGACTACTGATGCTGAGCTGGA AGCTGAGCTTTGTAAGTATGGGCAAGTAAAGGAGGTGAAGTTTTATGATGAGAAAGCCAGTGGGAAATCCAAAGGGTATT GCCAGGTTGAGTTCTTTGAAGCTTATGCTGCAACTGCGTGCAAGGATGGAATGAATGGGCATGAGTTTAATGGGAGGGCT TGTGTTGTTGCTTTTGCATCACCTTTTACTGTTAAGAAAATGGGAGAGGCTCAGTTAAGTAGGAATCAACAGATGAACCC AACTACAGCTACCCCAGGAAGGAGGGGGCCGACTGATACGGCGGCTAAGCCAGGTGGTAGTAATATTGGCACTGGTGGTA ACTATCAAGGTGGAGATGGCAATAGAGGTTATGGAAGAGGTAACTGGGGCAGAGGGAATAATCCTGGTATGGGGAATAGA GGGCATGTTAATCAAATGAGGAATAGGGGCGGTGGGATGGGTGGTAGAGGTATAATGGGTAATGGTGGAAATGGATTTGG ACAGGGTATGGGTGCTACTCCGCCTCTGTTGCCTCCACAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGGC CAATGGGTAGAATGGGCAGCTATGGAGGCTTTCCTGGTGCTCCTGCACCTCCATTCTCTGGGATTTTACCTTCATTCCCA GGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCAGCCTTTTTTGGTAGAGGTATGCATATGAATGGTATGGGGAT GATGCCCACATCAGGTATGGATGGTCCTAATATGGGAATGTGGTCAGATCCAAATATGGGTGGATGGGGTGGTGAAGAGC CTGGTGGTGGCAGGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCAGACCATCAGTATGGTGAGGTGAATCATGAT AGAGCTGGTTGGCCTAATGCTGCAAGGGATAAAGATAGAGGATCCGAAAGGGACTGGTCTGGTTCTTCTGAGCGAAGGTA CCGGGATGATAGAGATCAAGGGTATGAGAGAGATGCACCAAGAGAAAAAGAGATGGGGCACGACCAGGAATGGTCGGAAC GAAGGCATCGTGATGATAGAGAAATTGGCCGGGAACGATCTAGGGACCGGGACCGTGAACGATCTCGAGACCGTGACCGT GAAAGGTCTCGTGATCGTGAGAGAGACAAGTACAGGGAAGATAGGGAAAGATATGCAGATCATCATCATAGGCACAGAGA TCGAGAAGGAGACCATGATGATGAGTGGGAACGGGGACGTTCATCTAGGACTCACAGCAAATCTCGATTATCGCAGGAGG AAGAACACCATTCTAGGCCAAAAGATGCTGATTATGGGAAGAGGAGGCGGCTTACCTCTGAGTAA
Protein sequence (LotjaGi6g1v0143100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEGEGGDPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNEDLGPKNDGGDDKKPQSGPVMQDPG GVSIPGVGGEGPGNGAGGGESRVPPGRVDGFQNQGFRGNNGGSGSAAMGGGGGMRIELGQQSGKLSEIEEQGGGNDGVGV QGIGQQPIGGGNEGLVRQVQGVGGGGGGNLNRAGGNGVGNSVSGVNTGGVGVGVGVGVGVGIGAGVGIGAGVGGGGGAGM AGGGGGGGGTILFVGDLHWWTTDAELEAELCKYGQVKEVKFYDEKASGKSKGYCQVEFFEAYAATACKDGMNGHEFNGRA CVVAFASPFTVKKMGEAQLSRNQQMNPTTATPGRRGPTDTAAKPGGSNIGTGGNYQGGDGNRGYGRGNWGRGNNPGMGNR GHVNQMRNRGGGMGGRGIMGNGGNGFGQGMGATPPLLPPQSMMNQGFDPAFGGPMGRMGSYGGFPGAPAPPFSGILPSFP GVGLPGVAPHVNPAFFGRGMHMNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGRAGESSYGEEAASDHQYGEVNHD RAGWPNAARDKDRGSERDWSGSSERRYRDDRDQGYERDAPREKEMGHDQEWSERRHRDDREIGRERSRDRDRERSRDRDR ERSRDRERDKYREDRERYADHHHRHRDREGDHDDEWERGRSSRTHSKSRLSQEEEHHSRPKDADYGKRRRLTSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 219 | 216 | 6.9E-249 | – | |
| PANTHER | 4 | 219 | 216 | 6.9E-249 | ||
| MobiDBLite | 50 | 188 | 139 | - | – | |
| PANTHER | 226 | 714 | 489 | 6.9E-249 | ||
| PANTHER | 226 | 714 | 489 | 6.9E-249 | – | |
| Gene3D | 246 | 334 | 89 | 9.1E-20 | ||
| SUPERFAMILY | 249 | 344 | 96 | 1.63E-22 | ||
| ProSiteProfiles | 250 | 328 | 79 | 13.191 | ||
| SMART | 251 | 324 | 74 | 1.1E-17 | ||
| Pfam | 252 | 320 | 69 | 1.0E-13 | ||
| CDD | 252 | 325 | 74 | 1.22743E-32 | – | |
| MobiDBLite | 337 | 355 | 19 | - | – | |
| MobiDBLite | 337 | 379 | 43 | - | – | |
| MobiDBLite | 515 | 714 | 200 | - | – | |
| MobiDBLite | 552 | 714 | 163 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0143100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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