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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0143100 |
| Transcript ID | LotjaGi6g1v0143100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein, putative; TAIR: AT5G55670.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B; TrEMBL-Plants: tr|I1KYJ6|I1KYJ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0143100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41299357..41301420) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGAAGGTGAGGGTGGGGATCCAATGGATCACTTCCACCGTAACGAAGCTATCTCCGCCGTTGCTGACGACGGTTT CCTGGCCGAGGAAGACGACGATTACGAGGACCTTTACAACGATGTCAATGTTGGTGAAGGGTTCCTTCAATCCTTGCGCA AGAACGATGATTCAGCCTTCAGAAACGACGACGTTGACGACAAGCCGCCTCCAGCTCAAGCTCAAGATGCCGCTGTGGTT CCAGTACCTGGTGTCGGTGAGGGCGGCGGCGGCGGTGGGGTTGTGGAACCGAGGGTTTCTGGAGGAGTTGATGGGTTTAG AGGGAATGAGGTGGTGGGTGTCCAAGGAGGTGGCGGAGGGGGGATTAGGGTTGAATTAGGGCAGAAATCTGGGAAGTTGA GTGAGATTGAGGAGCAGAGTGGTAATGATGGTGTTGGAATCCAGGGTATTGAGCAGCAGCAGCAACCGCATGGTGGTGGT ATTGTTGGGAGTGTGGGGAATGAGGGTTTACTGAGACAAGGTCAAGGTGCTGGTGGAGGTGGAGGAGGAATACTTAACAG GGCTGGTGGAAATGGGGTTGGGAATAGTGTGGGCGGTTTTAATACCGGAGTAGGTGGAGGTGGATTTGGAGGTGCTGGTG GTGGTGGCGGCGGCGGAGGAACTGTTCTATTTGTGGGTGATTTGCACTGGTGGACTACTGATGCTGAACTGGAAGCTGAG CTTTGTAAGTATGGGCAAGTGAAGGAAGTTAAGTTTTTTGATGAGAAAGCCAGTGGGAAATCAAAAGGGTATTGCCAGGT TGAGTTTTATGAACCTTCGGCTGCAGCTGCTTGTAAGGATGGGATGAACGAACATGAGTTTAATGGGAGGGCTTGTGTCG TTGCTTATGCATCCCCTTTTACTGTTAAGAAAATGGGAGAGGCTCAGATAGCTAGGAATCAACAGGGGAACGTGAACCAA TCTGCAGTTCCCCAGGGAAGGAAGGGTCCTGCTGAGGCAGGAGCTAAGCCGGGTGGTAGTAATGTTGGGACAGGTAATAA CTACCAAGGTGGAGATGGCAATAGAGGTTATGGAAGAGGAAACTGGGGGAGAGGGAACAATCCTGGTATGGGGAATAGAG GGCCTGTTAATCAAATGAGGAATAGGGGTGGTAGAGGTATAATGGGTAATGGTGGAAATGGGTTTGGACAGGGTATGGGT GCTAATCCCCCTCTGATGCATCATCAGTCTATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCAATTGGTAGAAT GGGCAACTATGGAGGCTTTCCCGGTGCTCCGACACCTCCATTCTCGGGTATTATGCCTTCATTCCCTGGTGTTGGAGGTG TAGGTATGCCTGGAGTAGCTCCTCATGTTAATCCAGCCTTTTTTGGTAGAGGTATGCATATGAATGGTATGGGGATGATG CCCACATCAGGTATGGATGGTCCTAATATGGGAATGTGGTCAGATCCAAATATGGGTGGATGGGGTGGTGAAGAGCCTGG TGGTGGCAAGGCCGGAGAGTCAAGTTATGGGGAAGAAGCAGCATCTGACCATCAGTATGGTGAGGTGAACCACGATAGAG CTGGTTGGACTAATACTACGAGGGATAAAGATCGAGGTTCAGAAAGGGACTGGTCCGGTACTTCTGAGCGAAGGTACCGG GATGATAGAGATCAAGGATATGAAAGAGATGCACCTAGTGAAAAAGATATGGGACATGACCATGAATGGTCTGGAAGAAG GCAGCGTGATGATAGAGAAATGGGCCGAGAGCGATCTCGTGACCGTGATCGGGAACGATCTCGAGACCGTGACCGTGAAA GGGATCGCGATCGAGACCGTGAGCGTGACAGGTACAGGGAAGATAGGGGCAGGTATGCAGATCATCATAGATACAGAGAT CGTGAAGCAGAGCCTGATGATGAATTGGAGAGAGGACGGTCATCAAGGACTCACAGCAAATCACGGTTATCACATGATGA GGAACACCATTCTAGGCCAAGAGATGCTGATTATGGGAAGAGAAGGCGGCTTACCTCTGAGTAA
CDS sequence (LotjaGi6g1v0143100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGGTGAGGGTGGGGATCCAATGGATCACTTCCACCGTAACGAAGCTATCTCCGCCGTTGCTGACGACGGTTT CCTGGCCGAGGAAGACGACGATTACGAGGACCTTTACAACGATGTCAATGTTGGTGAAGGGTTCCTTCAATCCTTGCGCA AGAACGATGATTCAGCCTTCAGAAACGACGACGTTGACGACAAGCCGCCTCCAGCTCAAGCTCAAGATGCCGCTGTGGTT CCAGTACCTGGTGTCGGTGAGGGCGGCGGCGGCGGTGGGGTTGTGGAACCGAGGGTTTCTGGAGGAGTTGATGGGTTTAG AGGGAATGAGGTGGTGGGTGTCCAAGGAGGTGGCGGAGGGGGGATTAGGGTTGAATTAGGGCAGAAATCTGGGAAGTTGA GTGAGATTGAGGAGCAGAGTGGTAATGATGGTGTTGGAATCCAGGGTATTGAGCAGCAGCAGCAACCGCATGGTGGTGGT ATTGTTGGGAGTGTGGGGAATGAGGGTTTACTGAGACAAGGTCAAGGTGCTGGTGGAGGTGGAGGAGGAATACTTAACAG GGCTGGTGGAAATGGGGTTGGGAATAGTGTGGGCGGTTTTAATACCGGAGTAGGTGGAGGTGGATTTGGAGGTGCTGGTG GTGGTGGCGGCGGCGGAGGAACTGTTCTATTTGTGGGTGATTTGCACTGGTGGACTACTGATGCTGAACTGGAAGCTGAG CTTTGTAAGTATGGGCAAGTGAAGGAAGTTAAGTTTTTTGATGAGAAAGCCAGTGGGAAATCAAAAGGGTATTGCCAGGT TGAGTTTTATGAACCTTCGGCTGCAGCTGCTTGTAAGGATGGGATGAACGAACATGAGTTTAATGGGAGGGCTTGTGTCG TTGCTTATGCATCCCCTTTTACTGTTAAGAAAATGGGAGAGGCTCAGATAGCTAGGAATCAACAGGGGAACGTGAACCAA TCTGCAGTTCCCCAGGGAAGGAAGGGTCCTGCTGAGGCAGGAGCTAAGCCGGGTGGTAGTAATGTTGGGACAGGTAATAA CTACCAAGGTGGAGATGGCAATAGAGGTTATGGAAGAGGAAACTGGGGGAGAGGGAACAATCCTGGTATGGGGAATAGAG GGCCTGTTAATCAAATGAGGAATAGGGGTGGTAGAGGTATAATGGGTAATGGTGGAAATGGGTTTGGACAGGGTATGGGT GCTAATCCCCCTCTGATGCATCATCAGTCTATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCAATTGGTAGAAT GGGCAACTATGGAGGCTTTCCCGGTGCTCCGACACCTCCATTCTCGGGTATTATGCCTTCATTCCCTGGTGTTGGAGGTG TAGGTATGCCTGGAGTAGCTCCTCATGTTAATCCAGCCTTTTTTGGTAGAGGTATGCATATGAATGGTATGGGGATGATG CCCACATCAGGTATGGATGGTCCTAATATGGGAATGTGGTCAGATCCAAATATGGGTGGATGGGGTGGTGAAGAGCCTGG TGGTGGCAAGGCCGGAGAGTCAAGTTATGGGGAAGAAGCAGCATCTGACCATCAGTATGGTGAGGTGAACCACGATAGAG CTGGTTGGACTAATACTACGAGGGATAAAGATCGAGGTTCAGAAAGGGACTGGTCCGGTACTTCTGAGCGAAGGTACCGG GATGATAGAGATCAAGGATATGAAAGAGATGCACCTAGTGAAAAAGATATGGGACATGACCATGAATGGTCTGGAAGAAG GCAGCGTGATGATAGAGAAATGGGCCGAGAGCGATCTCGTGACCGTGATCGGGAACGATCTCGAGACCGTGACCGTGAAA GGGATCGCGATCGAGACCGTGAGCGTGACAGGTACAGGGAAGATAGGGGCAGGTATGCAGATCATCATAGATACAGAGAT CGTGAAGCAGAGCCTGATGATGAATTGGAGAGAGGACGGTCATCAAGGACTCACAGCAAATCACGGTTATCACATGATGA GGAACACCATTCTAGGCCAAGAGATGCTGATTATGGGAAGAGAAGGCGGCTTACCTCTGAGTAA
Protein sequence (LotjaGi6g1v0143100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEGEGGDPMDHFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSAFRNDDVDDKPPPAQAQDAAVV PVPGVGEGGGGGGVVEPRVSGGVDGFRGNEVVGVQGGGGGGIRVELGQKSGKLSEIEEQSGNDGVGIQGIEQQQQPHGGG IVGSVGNEGLLRQGQGAGGGGGGILNRAGGNGVGNSVGGFNTGVGGGGFGGAGGGGGGGGTVLFVGDLHWWTTDAELEAE LCKYGQVKEVKFFDEKASGKSKGYCQVEFYEPSAAAACKDGMNEHEFNGRACVVAYASPFTVKKMGEAQIARNQQGNVNQ SAVPQGRKGPAEAGAKPGGSNVGTGNNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNQMRNRGGRGIMGNGGNGFGQGMG ANPPLMHHQSMMNQGFDPAFGGPIGRMGNYGGFPGAPTPPFSGIMPSFPGVGGVGMPGVAPHVNPAFFGRGMHMNGMGMM PTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVNHDRAGWTNTTRDKDRGSERDWSGTSERRYR DDRDQGYERDAPSEKDMGHDHEWSGRRQRDDREMGRERSRDRDRERSRDRDRERDRDRDRERDRYREDRGRYADHHRYRD REAEPDDELERGRSSRTHSKSRLSHDEEHHSRPRDADYGKRRRLTSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 687 | 684 | 1.2E-253 | – | |
| PANTHER | 4 | 687 | 684 | 1.2E-253 | ||
| MobiDBLite | 54 | 76 | 23 | - | – | |
| MobiDBLite | 56 | 70 | 15 | - | – | |
| Gene3D | 217 | 305 | 89 | 3.4E-20 | ||
| SUPERFAMILY | 220 | 320 | 101 | 3.76E-23 | ||
| ProSiteProfiles | 221 | 299 | 79 | 13.277 | ||
| SMART | 222 | 295 | 74 | 1.4E-18 | ||
| Pfam | 223 | 291 | 69 | 2.9E-13 | ||
| CDD | 227 | 296 | 70 | 1.45083E-31 | – | |
| MobiDBLite | 312 | 378 | 67 | - | – | |
| MobiDBLite | 486 | 687 | 202 | - | – | |
| MobiDBLite | 524 | 687 | 164 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0143100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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