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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0149300 |
| Transcript ID | LotjaGi6g1v0149300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G26640.2 WRKY family transcription factor family protein; Swiss-Prot: sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20; TrEMBL-Plants: tr|I1KYG7|I1KYG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0149300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:42495134..42499925) extracted from Lotus japonicus Gifu genome v1.2.
AGGTGGAACCTTCACCTACCACAGGGTCCCTTCCTAGGCTTCAACAAACGGCACATGGTTTTGTGATTTCTGCGGCATTT CCCGTAGCCACTGTATGCTTCAATACCAATACTGTTGATAACAGAAAATTGAGCTTCTTTGATCTTAAATCACACTGTAG ATCAAATATGGTAATGAATTATTAAATGTTAAACCAAACTGATGAATATAAAGCTTTCAACTAAGATGGTCCCTTGGACT TGACTTGGAAGTATTTTCTCCTAGAATTTTATCTGATCATAACCCGTGTACTAAGTTAACGAGATAGGTTGATCAATTAA AGTATTGCAAACCTTTCACTATTTTAAAGATGTTTTCTGTATTTAGTTTTCAAGTTACAGGCTTTTTAGCTTTGTAAAAC ATCTCGTTCGAACTATTTTTCTCTTTTCTTCTTCTGTAAAAAAGGTTTTAAAAATTATTTCCGAAAATAGTTTTAAATTC AGAAAACTGTGAATGGAATCAAACAAACCCTTAATGTTCTGATTAATATTGCTTTGTTGAATATGACTAGTTGTATAGTA CTTACACAATGCTATTCACTTATTTAAGGTTCCTGCAGACTTTGAAGACCATGTAAGTGATAAATCTACTCAAAATGGTC AAGTAAAAGCAGTCAAAAGTGAAATAGCAGTCCCTTCAAATGAAGTAGGTCGATCATCACCTGTTCACATGGTTAGTTCT GGGGCTAGTACTCATGTTGAAGTCAATTCACATGAATTAAACCCAAGGGGCAACATAGCAACTGGGCCCCAAGCATCACA AATTGAGGGTGGGGCTGGTGGACTTCCAGTTGCTGCTGACAGAGCATCTGATGATGGATACAATTGGCGAAAATATGGGC AAAAACTTGTTAAAGGAAGTGAATTTCCCCGCAGTTATTACAAATGTACACATCCTAATTGTGAAGTGAAGAAACTATTT GAACGCTCTCATGATGGGAAAATCACTGAGATAATTTACAAGGGAACCCATGATCATCCTAAACCTCCACCAAACCGCCG ATACTCTACTGGAACTATTATATCTATGCCAGAAGAGAGATATGATAAGGCTTATTTGACTAGCAGAGATGGTAATATCG ACTGGATACTTCTCATTCATTCCTTTCTATTTTTATTTAGTGTTAAGAAAATAACGTCTCTTTCATTCTCTTCTAATTAT TGAATTTTTAGACAAAGGATTCAATAATTATGGCCAGGTGTCTCACACAGCTGAGCCTGACAGTACTCCAGAACTATCAC CTTCAGCAACAAATGATGATAGTGTAGAGGGTATTGGGTTTTTGTCAAACCGGAATAATGATGAGGTTGATGATGATGAT CCCTTCTTAAAGCGAAGGTTTGTCAATTTAGGCCAAAGTTCTGGGTTTCTTTGTGCTGCTTGTGGTTACTTGCTGATCAC TTAATATTTATTGAGCAGAAAAATGGATCTCGGAAATATTGACATCACTCCTGTAGTTAAGCCTATCCGAGAGCCACGGG TCGTTGTACAGACTCTGAGTGAGGTTGATATTTTGGATGATGGTTATCGTTGGCGTAAGTATGGGCAGAAGGTGGTGAGA GGCAATCCTAACCCTAGGTATGTCCACACATTGATGACTATAATTGATGAAGTCCAATCTACGGTGTGCTAGTTTGGCTT TTTTCTACAAGCTTTTATCAGTAGCTTCTCAAAATAATCCTAACAATAGCTGATAAAGTAACAAGTACTTTCTTAGTTTT ATAATTGAGCCAAGCAACTTCTGCATTACATAAAAGTCCTAAAGAAATAAATTACTTTTGAATGTAACCTTAAATTTACT TTTTTTAAGCTTAGAAAATGGCCCCTTAAATTTTGAAATATTCTTTGCATGTATTTTCCTTACTGTCCAGAAGGCTGAGA CAACCTCGTCTCACTCACAGAAAGGGTGTGTGATAGATGGTGTATGTTTCATATGGTTTCTAGAATAGGAAAGGGAGTAG TATTCTATGATATATTCTGATGAGTGTAGTTAGAACCACATGAATTGTGCGATCCATATCGCTATTCGGTACCAAATCAG CAGAGATCGATACAGATCGGATTCTGACATGCATCACGCAGGGGTCGCGCACTCAGGACGGGGTGAGTTGTGCAATCCAA TTATGAAAATACTGCTTTTAGGGTTACATTTCTCTTGCAATTTTTTTTATAAAATTGGAGGCAAAAGGAGAATAAGAGAT TGGTGAAGAGGGTGGAGGGAGATGGTGCACCCACTGGTTGCTGATGTCATTGCATAGTGAAACCCACAGCACCTGTACAG GGAGAGGGGTGCCGAAGAAGAGAAATAGCGGGAAAACACTGCTCCGGGAAGAAAGTTTCCTGGGAAACCGCTGGTAAGGA TGAAGAAAGGCGAGGTGAAGAGGAGGGGTGAGCTGCCGCTAGAGAGAGGGGTTTTTTTTAGTCAGCAGAGGGGGGGGGGG GGGTACTGCAGGGAAAAAGAGGAAAGGTAGGGTTTGGCTTTTGACACACAGAATCCCTTGTTGCTTATTATGCAATGAGT TCTTCAGTTATTTTACTTAAAAATACTAATATTTCTATGTTTAAATGTTTATTTATGGTTAAAAGGGAACTGGATTGAAT TAATAGTGTTTAAGTAGTAAGGTACTGCAGGGAAAAAGAGGAAAGGTAGGGTTTGGCTTTTGACACACAGAATCCCTTGT TGCTTATTATGCAATGAGTTCTTCAGTTATTTTACTTAAAAATACTAATATTTCTATGTTTAAATGTTTATTTATGGTTA AAAGGGAACTGGATTGAATTAATAGTGTTTAAGTAGTAATTTGTATGTAACAGCATCTTTACTCAGAATATGCGAAAAAA CACAGTCAATGGTAAGGTTCACATGAAAGTAGACTGCTAGCCAAAAATTTAAGTTTTTTTTTCAGGTTTAATGTTTTGAA ACTGAAATACTGTGTCATGGCTAAGAACTTGCATTCCGTACAAGTAAGTTGCATCCTTTTCATTTTGATGATTCGCTTTT AGTATTTATTTCCATGGCACTGACCTGAAATTATGATCACATAGAGAATTTTGGGTGTGTTACAAGTCCCCACATTGACT AGGGATATGGCCAAACAAGTGTTTATAAAGGGTAGAACAACTCTCAACTCTTGAGCTAGCTTTTGGGTTGAGTTAGGCCT CCCAAATTCTAATAGGGTGTAAGAAACTTTCTATTTGAGTTGAAAGATGCTTGAAATGCATTTTATGTTGCTTTTGCTGC ACTAAATATATCTCGAAAGTTCTTTGTCATATTTTACGTTTCTTATGCTCTAAAATAATTTAAAAATTCTGCATGTTTTA GTCTTGTTCAGAATCCTCATTAAATGGGAAGGGAAATTTCTACCTTTCCTGCAAGTTCTCTTCATTAGCACCAAATCATC TGAACTTTTAGTTTTAGGTAGGACTACTGTGTACTTGAGTTTTTCTCGCCTATAAGTTTTCCCTGGTTAACATTTCTCTA CCCAAGTGTCAGGAATTCCAGTTAGTTTTGATTAAGGATTGGTATATTTAATTTGACCCTAACTTTACAATTAAGGCCTG CTGCTGGTGTCATTTTCTGAATTTGTTGGGCACTTAGGAGGAAGTAGCTATAACATTGAGCTTTATTAATCTCAGATGCA ATACTAAATACTGGTACCACTCATTGGATGCATCTGAAACCTCAAGACCTTTCTGTTTTATGATAAGATCATTAATTTGG CTGTCATTTCTGTAAATGCTAGAATCTGAGCATGTTGCTTCTTCTGTGTTCCTCTGTTGTGTAATTGTATTTTTGTCCTT TGGCAAGAATCATCACATTCCATTCTTTAAGCACCTCAAAGCATAAGAAGTGAATCAAATGTGTACATAGATCCCTCCAT GAGCTTGGCTGGTCTCTCTGATCCATAGTTCCATAATGTGGTGATTAGTTGCATAGTGTTGGTTAACCTTGTTTCTTATC GCGCTCACTTTATTACACAGGAGTTATTACAAGTGCACGAATGCTGGTTGCCCCGTTAGAAAACACGTGGAGAGGGCATC TCATGATCCAAAAGCTGTAATAACCACATATGAGGGTAAGCACAATCATGATGTACCAATTGCAAGGAACAGTTGCCATG ATCACATGGCAGGACAAGCAACTGCACAGACAAGAATTAGGGCAGAAGAAAGTGATACTATTAGCCTTGATCTTGGTATG GGGATTAGTCAAGCTGCTGAAAATAGATCAAACAATCAAGGGAGGATGGTGCTTTCTGAATTTGGGGACAGTCAAACTCA CACCAGCAATTCCAATTTCAAGTTTGTTCATACTGCCCCTGCTTCAGTATACTTAGGTGTACTAAATAACAATAACTCAC ATCCATATGGTTCTAAAGAAAATCCAAGTGATAGAAACCATTCTGCTTATCCTTGCCCCCAGAACATGGGAAGAATTCTG ATGGGTCCCTGAAATTGTTTACACCAAAAATCAAACAAAAATGAAAATTACTTTCTTTTTGGCGGGTGAAGCTTCAAAGG CATAGCTCCGTTTTTGTTTGTTTGAAAAAGCTAATTGTTCTTATGTGTTCATATTATTGCTATCTGAGAGGTGCTCTTTG GTAGAAGTAGTAGTAGATGTGTCCATTCTTGTTGAGTTTTAAATCTTATTGTTGTCTGTATAATATAGAAATTCTTCTGT ACAAATATGAAGCTGATACCAAAGTTACTTGGACATAAAACCTTGTAAAAGTGTTGGAACTCGACTATTTAT
CDS sequence (LotjaGi6g1v0149300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCCTGCAGACTTTGAAGACCATGTAAGTGATAAATCTACTCAAAATGGTCAAGTAAAAGCAGTCAAAAGTGAAAT AGCAGTCCCTTCAAATGAAGTAGGTCGATCATCACCTGTTCACATGGTTAGTTCTGGGGCTAGTACTCATGTTGAAGTCA ATTCACATGAATTAAACCCAAGGGGCAACATAGCAACTGGGCCCCAAGCATCACAAATTGAGGGTGGGGCTGGTGGACTT CCAGTTGCTGCTGACAGAGCATCTGATGATGGATACAATTGGCGAAAATATGGGCAAAAACTTGTTAAAGGAAGTGAATT TCCCCGCAGTTATTACAAATGTACACATCCTAATTGTGAAGTGAAGAAACTATTTGAACGCTCTCATGATGGGAAAATCA CTGAGATAATTTACAAGGGAACCCATGATCATCCTAAACCTCCACCAAACCGCCGATACTCTACTGGAACTATTATATCT ATGCCAGAAGAGAGATATGATAAGGCTTATTTGACTAGCAGAGATGACAAAGGATTCAATAATTATGGCCAGGTGTCTCA CACAGCTGAGCCTGACAGTACTCCAGAACTATCACCTTCAGCAACAAATGATGATAGTGTAGAGGGTATTGGGTTTTTGT CAAACCGGAATAATGATGAGGTTGATGATGATGATCCCTTCTTAAAGCGAAGAAAAATGGATCTCGGAAATATTGACATC ACTCCTGTAGTTAAGCCTATCCGAGAGCCACGGGTCGTTGTACAGACTCTGAGTGAGGTTGATATTTTGGATGATGGTTA TCGTTGGCGTAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAGTGCACGAATGCTGGTT GCCCCGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCAAAAGCTGTAATAACCACATATGAGGGTAAGCACAATCAT GATGTACCAATTGCAAGGAACAGTTGCCATGATCACATGGCAGGACAAGCAACTGCACAGACAAGAATTAGGGCAGAAGA AAGTGATACTATTAGCCTTGATCTTGGTATGGGGATTAGTCAAGCTGCTGAAAATAGATCAAACAATCAAGGGAGGATGG TGCTTTCTGAATTTGGGGACAGTCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTGCCCCTGCTTCAGTA TACTTAGGTGTACTAAATAACAATAACTCACATCCATATGGTTCTAAAGAAAATCCAAGTGATAGAAACCATTCTGCTTA TCCTTGCCCCCAGAACATGGGAAGAATTCTGATGGGTCCCTGA
Protein sequence (LotjaGi6g1v0149300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPADFEDHVSDKSTQNGQVKAVKSEIAVPSNEVGRSSPVHMVSSGASTHVEVNSHELNPRGNIATGPQASQIEGGAGGL PVAADRASDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGKITEIIYKGTHDHPKPPPNRRYSTGTIIS MPEERYDKAYLTSRDDKGFNNYGQVSHTAEPDSTPELSPSATNDDSVEGIGFLSNRNNDEVDDDDPFLKRRKMDLGNIDI TPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNH DVPIARNSCHDHMAGQATAQTRIRAEESDTISLDLGMGISQAAENRSNNQGRMVLSEFGDSQTHTSNSNFKFVHTAPASV YLGVLNNNNSHPYGSKENPSDRNHSAYPCPQNMGRILMGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 429 | 429 | 1.2E-225 | – | |
| PANTHER | 1 | 429 | 429 | 1.2E-225 | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| MobiDBLite | 61 | 81 | 21 | - | – | |
| Gene3D | 80 | 148 | 69 | 9.7E-28 | ||
| ProSiteProfiles | 83 | 147 | 65 | 23.938 | ||
| SUPERFAMILY | 87 | 147 | 61 | 7.06E-25 | ||
| SMART | 88 | 146 | 59 | 3.4E-34 | ||
| Pfam | 89 | 145 | 57 | 7.8E-25 | ||
| MobiDBLite | 173 | 223 | 51 | - | – | |
| MobiDBLite | 177 | 213 | 37 | - | – | |
| Gene3D | 249 | 324 | 76 | 2.6E-35 | ||
| SUPERFAMILY | 255 | 323 | 69 | 1.7E-29 | ||
| ProSiteProfiles | 258 | 323 | 66 | 38.825 | ||
| SMART | 263 | 322 | 60 | 3.1E-39 | ||
| Pfam | 264 | 321 | 58 | 5.5E-26 | ||
| MobiDBLite | 410 | 427 | 18 | - | – | |
| MobiDBLite | 410 | 440 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi6g1v0149300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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