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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0150400 |
| Transcript ID | LotjaGi6g1v0150400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytokinin riboside 5'-monophosphate phosphoribohydrolase; TAIR: AT1G50575.1 Putative lysine decarboxylase family protein; Swiss-Prot: sp|Q0JBP5|LOGL6_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6; TrEMBL-Plants: tr|I1KYF9|I1KYF9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0150400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:42635943..42639135) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTATTTTCCAGACATCCCATAGATTATCGAAGGAAAAAAAAACATAGATTGTTGGTGTCTACTACTATAGTTATAGT AATCTTCGCTGGTTTCTTTGGGAGTTTCAAGGATGGGATTCTCAGTGGCAGCTTCGCTGGGTTCCCATATTGTGCTGAGA GAAACTCATGAAAACAGAATCAAGTGCCGATTGTTTTGCAAAAGAGAGCACAGTAGCGTTGGTTTCAAGTTCTCAAAGCG TAAGGCCAATCAAAGAGCAGTTTTTCTTAGCAAACAAGAGTCAGTTGACTTGGATGAGAGGAAGAGCCCAAATGAGGTAA TACCCACTTAGCATTTACCATCTTCTTTGTTGAAGTTAGTGTCTTTTGCTTGTATGTGATGAGAATTGGGAATGTTGAAG CCCATTTCTGTTAAACAAGCTTCTGTTTTGTTGCAATGCTTAAGAGTGGCTAAATCTATATAAACTTGTAGCTGTTTTGT GTTTCAATGGATATGGTATGCACATTGATTAGAGAATGTGTTCTACTGAATTTGTTTTCTGAGTATGTTATTCATGGAAG AATCTACCTGGGGAAGGCTTTGTTGTGTTGTTATTCATGGAGGAGTTTCCAGTTTTACAATGATGGGATGCTAGAAATTG ATGATATGGAGAGCAGTTTCAATTTTTTGATGGAAATTGTTTACCTTTACTATGGATATTCTTCTTCTTTTATGACTGTA TGGAGGTTAATTGTTAAGTTTCTTGATAGGGAATCTGAAGCACACAAGTGTGTGGGTTTTAGGACTGTAGCTAGGTTGCA CTATTTACCACAGACCTATCAAAAAGTAGTTGTAATCAAATTTTGTGAAGGTGATGGTAGGGGTATTTGCTGGGATTCCT TTGGTGGAAGACAGAACTCAGAAATGATATAGGGGTTGATTTTTAATGGGACTGCTGATGAGTGATGGCCATTAAACATC TTTCTTCAGCTTATCTTGTGTCTAATTGTTGAAAATACTGTCTTCAAACCTTGATATTTTATGAAAAACTGTGAATGAGA GCAAAATAATTCATTTTCTGTCTTGAAAACTTAAATATGACCTAACCTATGGTAGGACTGGTTTCTACTAGTATTCAATA GCCTAAGACGCCCGTTTATCCATGGATTCGTGCTGGTTAGTCATGGAAGTTGATTTTTTCTTAATAGGGCTTGCCATGAT GTAGTTATGGGCTCCGTAGTGTTCCTGTGGGCATTTGCTTATTTGTGTCATGAATTTTGTTGATTCTCAAATTTGTTCTC ATTTTCATTTTGTTCTTTCTGCATTCCACTTTGTGGTATTGAGTATTGACATCAGTAAATATCACGAATAAACCATATTT GAGGTTATGAGGTTCAGCAATGTGAAATGCAATTTATGATGGATAATATTGTGGACCTAGGGTACATATATCTAGTTTGT CCTTGGGGCAGTATATTTTTTGCTTAATTAGGCATATGCCACCTTTAGAATTCTTGGACTTAACATTCCAACTTCTGGTG CCGATAATTGGTGCAAACTTTTGGTGCTTGATACAACTCTAACAATAAGGAAATAATAGGTCAAGAACTTTGCTCAGAAC TGATTATGCATCATGGATTCTCTAGAAAGCACTTTGTTCAGAGAGTTCTTTTAGGCTTCTAACTTCTTCCTTCAGTTCTA ACTATATTCAATAATTTTTATGGCCCTTTGGAATTGCTGTGAAAAGTCAGCAATATGAATCTTAACTTCGGTTTTCTTAA AACTATAAATTACAGGTTAGAGAAGAGATCAAACAATGTTATGAACTCATAAACAGATTAGGGAGAGGAGCTCTGTATTT AGGTTCTTCAAGGATGGGCCCTGGCCATTCGCATTACCTGCAAGCAAAAGAGCTGGCCAAAGAGGCAAGTAATTTCTTAC ATTAGCTTGCCTGTTTTCTTGCTTACTTGCTGCTGGGTATAATGCAAGTTCTTATTCTTTTGTTAGCCAATAATGTTGCT TCTGGCATATTTGATTGAGACATTGGCAAGTGTCTTCTGTAGAAGATATGACTATTTTTCCTCACATCTTTGTGAGCAGA TAGCAAATCTATTGGACTGCACTACATGGTCAGGGGCTGGACCAGGGCTAATGGATGCTGTTACTCAAGGTGCTCTTCTG GCAGGAAAACCAATTGGTGGATTCAAGATAGGAAAAGAAGCAGGGGAATGGACAGCATCCAACTTCCATCCATACTTACC GTCAGGAAATTACCTTACCTGCAGGTAATCTACTTCCATTGCTTTATAGCACTAACGCACATGCAAGTGTTTGACGGAGC TTTTGAGAATAGCTTATGACCTACCTTTAAGTTGTTTTGAGCTTATTTTCTTAAGATGCTCATATTAGCTTATGAATAAG CGTTAATGTAACATATTTTGTACTTCTTTCAATAAGCTTCTCAAATTAGCTTATGAATAAGCACTTATGTGATAAGCGCT TATTGCCATAAGCGCTTAATTAAGTTATTTACCCAAACGCATCCTTAACTTCAATGGTCTGCTTAGACTGTTTTCAATTT TTTTCAGGTTTTTCTCTGCGCGAAAGCACGGGCTGGTTGATGCTGTAGTGAGGAGCAACTCTTCTGATAAGACTGCTGTT GTTGCCCTTCCTGGTGGGGTTGGTACTCTAGATGAGTTGTTTGAGATACTGGCATTGATTCAGCTAGAACGAATTGGATC AAAGCTTCCTGTTCCCTTCCTGTTGATGAACTATGATTCATTTTATTCAAAGCTGCTTGACTTTCTAAACGTTTGTGAGG ATTGGGGAACTGTCTCTAAAGGAGAAGTTGCATCTTTGTGGAAGGTTTGTAACAGCAACTCAGAAGCCTTGGCTTACCTG GCAGATTTCTACTGCATTTCTTCCAGTGACACAAGTCAGAATGTAACTGAATTGTATAGCAATCATGAATCAGCTTCCTG ATAAGAATTTTCCCTTCTTTTTTTCTTTTTGTCCCCTGAATGTTAATTGTTAGGTAATAATTTTCTTGCTCAACATAGCT TGAACAGTATAATATTCTGCTAAATGGTTGCAATGTTAACAAGTTTAATGCTTGACTTTTGACATGTGCAGTTGCAAGCA GATTCATAGGTAGTCACATTTGTGATTTGAATTGTGGAAAAAGGAAATGAGAGTTTTTTCCAACTTCACTTAA
CDS sequence (LotjaGi6g1v0150400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTCTCAGTGGCAGCTTCGCTGGGTTCCCATATTGTGCTGAGAGAAACTCATGAAAACAGAATCAAGTGCCGATT GTTTTGCAAAAGAGAGCACAGTAGCGTTGGTTTCAAGTTCTCAAAGCGTAAGGCCAATCAAAGAGCAGTTTTTCTTAGCA AACAAGAGTCAGTTGACTTGGATGAGAGGAAGAGCCCAAATGAGGTTAGAGAAGAGATCAAACAATGTTATGAACTCATA AACAGATTAGGGAGAGGAGCTCTGTATTTAGGTTCTTCAAGGATGGGCCCTGGCCATTCGCATTACCTGCAAGCAAAAGA GCTGGCCAAAGAGATAGCAAATCTATTGGACTGCACTACATGGTCAGGGGCTGGACCAGGGCTAATGGATGCTGTTACTC AAGGTGCTCTTCTGGCAGGAAAACCAATTGGTGGATTCAAGATAGGAAAAGAAGCAGGGGAATGGACAGCATCCAACTTC CATCCATACTTACCGTCAGGAAATTACCTTACCTGCAGGTTTTTCTCTGCGCGAAAGCACGGGCTGGTTGATGCTGTAGT GAGGAGCAACTCTTCTGATAAGACTGCTGTTGTTGCCCTTCCTGGTGGGGTTGGTACTCTAGATGAGTTGTTTGAGATAC TGGCATTGATTCAGCTAGAACGAATTGGATCAAAGCTTCCTGTTCCCTTCCTGTTGATGAACTATGATTCATTTTATTCA AAGCTGCTTGACTTTCTAAACGTTTGTGAGGATTGGGGAACTGTCTCTAAAGGAGAAGTTGCATCTTTGTGGAAGGTTTG TAACAGCAACTCAGAAGCCTTGGCTTACCTGGCAGATTTCTACTGCATTTCTTCCAGTGACACAAGTCAGAATGTAACTG AATTGTATAGCAATCATGAATCAGCTTCCTGA
Protein sequence (LotjaGi6g1v0150400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFSVAASLGSHIVLRETHENRIKCRLFCKREHSSVGFKFSKRKANQRAVFLSKQESVDLDERKSPNEVREEIKQCYELI NRLGRGALYLGSSRMGPGHSHYLQAKELAKEIANLLDCTTWSGAGPGLMDAVTQGALLAGKPIGGFKIGKEAGEWTASNF HPYLPSGNYLTCRFFSARKHGLVDAVVRSNSSDKTAVVALPGGVGTLDELFEILALIQLERIGSKLPVPFLLMNYDSFYS KLLDFLNVCEDWGTVSKGEVASLWKVCNSNSEALAYLADFYCISSSDTSQNVTELYSNHESAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| PANTHER | 9 | 288 | 280 | 2.2E-149 | – | |
| PANTHER | 9 | 288 | 280 | 2.2E-149 | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 303 | 287 | - | – | |
| Gene3D | 66 | 280 | 215 | 3.4E-47 | – | |
| SUPERFAMILY | 76 | 277 | 202 | 9.16E-31 | – | |
| Pfam | 129 | 276 | 148 | 4.4E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0150400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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