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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0153100 |
| Transcript ID | LotjaGi6g1v0153100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division FtsZ-like protein; TAIR: AT5G55280.1 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1; Swiss-Prot: sp|Q42545|FTSZ1_ARATH Cell division protein FtsZ homolog 1, chloroplastic; TrEMBL-Plants: tr|K7LA88|K7LA88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0153100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43120037..43122791) extracted from Lotus japonicus Gifu genome v1.2.
GTCACTATGCACTCAAATGCTTATGCTTCTGTTAGCTTCAGCTTCATTTGAAAACGAACCTCTCAACATGAAAATTGAAC TCAATCTTTAACTTCCCGTAAACCCTAATCCCCATTGTTCACATTGCAGAAAAAAACTCTAGAATCCATAACCAAGAGTG GAAATGGCAATGCTTCCCCTCACAAACCCTAATGAGCTTCTCTCATCCTCCTCCATTCCCACTCCAATTCGCCACAATGC ATTGTCATCCTCCTCCTTTTCCCTCAGAAAATGCGTTTCTCTAAATCCTACAACAAGAAGAATCAGCACCCCAGACCCCC TACGACGTCGTTTTGGGCCAGTTACCTGCACCTTCGCGCCCATTGACAACGCCAAGATTAAGGTTGTCGGTGTTGGTGGC GGCGGCAACAATGCCGTTAACCGCATGATTGGTTGCGGATTACAAGTGGGTTTCATTTTTTCCCTACCCATTTTGTAATT ACTGATCAAGTTTTGTTTTTTATTCAATTTTGAAAAATGGGTCAGTTATTTTATTTATTTATCTATCAACAATGTGGTCA CTGTGTTGGGTTTGTTTCTATTTTGGAGAGTTGCTTTTATCATGGTTGCAATTTTTGTAATCACTTCCATGGTGAAGACA GTGTAGACTAAGCTGTTATTGGTGTTTTGCTGCTGCACTGTAACTAAGTTGATTGCTAATGTTGAATTCTTCTGCACTTT ATTTTACTAACCAGGGTGTAGATTTTTATGCTATAAATACTGATGCTCAAGCACTGTTGCATTCTGCTGCTGAGAATCCT ATCAAAATTGGAGAACTTCTGACCCGTGGTTTAGGTCAGGCGCTCGCCTTCTATGCCTAGGAGGTTCCTTTGTGCTCAAT TGTAACTTGAATTTATTTTGACTATTATGTGACTTTTGTGTCTGTGTAGCCTCACTCTAATGTGGCCTTTGATTCGGATT GCTTGATAGAGATGCAGGTACTGGTGGGAATCCACTTTTGGGGGAACAAGCTGCTGAGGAATCAAAAGAAGCTATTGCTA ATGCTCTTAAAGGCTCAGATTTGGTGTTTGTAACTGCTGGCATGGGCGGGGGTACAGGGTCTGGTGCTGCGCCAGTCGTG GCTCAAATATCAAAGGAGGCAGGTTACTTGACTGTAGGTGTTGTTACATATCCCTTCAGCTTTGAAGGACGCAAAAGATC GTTACAGGCAGGTGTCATTTCTTCCCTTACTTGAGAATAGGCTAGTATGCTGCTTAGTATGTAGAAGCTACTTCCAATGT TACATACTTACACGATACCGCTTTCATTATTTTGCTCAAAGTTGAAATTCCCCCTTTTTTTTCATGAGTTATACTTATAC CCTTCTAATTGCTGAAGTGTGATCATGTATTCCATCAATTGCTTGATGTTTATTTTTCGTTCTTCCAAGATATTGTGTTG CTCCGATAAGCGCTTGTGTGGTTAAAATTTACACGTTCTCTTCCAGGCACTTGAAGCCATTGAAAAGCTGCAGAAAAATG TGGATACACTTATAGTGATTCCAAATGACCGTCTGCTTGACATAGCTGATGAGCAGACTGCGCTGCAGGACGCTTTCCAT CTTGCAGATGATGTTCTACGGCAGGGAGTACAGGGGATATCAGACATCATAACAGTGAGTTGATTAATAATTTATTCATA TTTCCTGTCTGGGCATTATAAAGTGTAAAAGTTCAGTGATCCCCTTGATTGGTTGATTGCAAAGAGAACAAGGAGGCATT AGAGGCATGAATCATTCTTCACCTCCTTTCTCCCAATTCATTTGAACGACTCCTCCTCTATCATAATTGGACATTTATTT AATTCTCGGGCTGATTTTTCTGTTGTATCTTTTCACAGATACCTGGCCTTGTAAATGTGGATTTTGCTGATGTAAAAGCT GTGATGAAAGATTCTGGAACTGCAATGCTTGGAGTAGGTGTTTCCTCCAGTAAAAACCGTGCAGAAGAAGCTGCTGAACA GGCTACTTTGGCTCCTTTAATTGGATCATCTATTCAGTCAGCTACTGGGATAGTATATAATATTACTGGAGGAAAAGACA TAACTCTTCAGGAAGTGAATAGAGTGTCTCAGGTATTTCATCAGAACTTGCTGAAGGAGCATTTTAGCATTCCTTTTTGC TCTCTGATCTTCTGAACTTGTTTACTGATTTTCCAACCTAATAAATTTTATAGGTCGTGACAAGTTTAGCCGATCCTTCT GCCAATATTATATTTGGGGCTGTTGTTGATGATCGCTACAATGGGGAGATTCATGTGACCATGATTGCAACTGGCTTCTC ACAGTCCTTCCAGAAGACACTACTAACAGATCCAAGGGCTGCAAAGCTGCTTGACAGATTACCAGGGGGCCAAGAAAGCA AGGCAACTTCCCCTCCCCTCAATGCCTCAAATATTCCATCAACTGTTGCATCTAGAGCATCCCCACGAAAGCTCTTCTTT TAATTGCTTAGTTCTACTCTTTTTAGTTTAGTCATTTAGCTGTGGAATGACAATACTCTTCCCTCGAATATCTACTCTGT TTTTGCAAACTCCCCACTTTCTTTCTTTTCTCCAAGAAGTTGGCTTTTTCCTATTTGTATGACTCGTTAGTCTGATTGTT AGTGTAACAAACAACTTGCTTGTAGCTCACTAAACCAGCATTTTGTGGTATGTATATATAGAAGTTCAATTTTTTTGAGA AGACAATAATTGGAAGTTGGAAAGACTTCTTGAGG
CDS sequence (LotjaGi6g1v0153100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGCTTCCCCTCACAAACCCTAATGAGCTTCTCTCATCCTCCTCCATTCCCACTCCAATTCGCCACAATGCATT GTCATCCTCCTCCTTTTCCCTCAGAAAATGCGTTTCTCTAAATCCTACAACAAGAAGAATCAGCACCCCAGACCCCCTAC GACGTCGTTTTGGGCCAGTTACCTGCACCTTCGCGCCCATTGACAACGCCAAGATTAAGGTTGTCGGTGTTGGTGGCGGC GGCAACAATGCCGTTAACCGCATGATTGGTTGCGGATTACAAGGTGTAGATTTTTATGCTATAAATACTGATGCTCAAGC ACTGTTGCATTCTGCTGCTGAGAATCCTATCAAAATTGGAGAACTTCTGACCCGTGGTTTAGGTACTGGTGGGAATCCAC TTTTGGGGGAACAAGCTGCTGAGGAATCAAAAGAAGCTATTGCTAATGCTCTTAAAGGCTCAGATTTGGTGTTTGTAACT GCTGGCATGGGCGGGGGTACAGGGTCTGGTGCTGCGCCAGTCGTGGCTCAAATATCAAAGGAGGCAGGTTACTTGACTGT AGGTGTTGTTACATATCCCTTCAGCTTTGAAGGACGCAAAAGATCGTTACAGGCACTTGAAGCCATTGAAAAGCTGCAGA AAAATGTGGATACACTTATAGTGATTCCAAATGACCGTCTGCTTGACATAGCTGATGAGCAGACTGCGCTGCAGGACGCT TTCCATCTTGCAGATGATGTTCTACGGCAGGGAGTACAGGGGATATCAGACATCATAACAATACCTGGCCTTGTAAATGT GGATTTTGCTGATGTAAAAGCTGTGATGAAAGATTCTGGAACTGCAATGCTTGGAGTAGGTGTTTCCTCCAGTAAAAACC GTGCAGAAGAAGCTGCTGAACAGGCTACTTTGGCTCCTTTAATTGGATCATCTATTCAGTCAGCTACTGGGATAGTATAT AATATTACTGGAGGAAAAGACATAACTCTTCAGGAAGTGAATAGAGTGTCTCAGGTCGTGACAAGTTTAGCCGATCCTTC TGCCAATATTATATTTGGGGCTGTTGTTGATGATCGCTACAATGGGGAGATTCATGTGACCATGATTGCAACTGGCTTCT CACAGTCCTTCCAGAAGACACTACTAACAGATCCAAGGGCTGCAAAGCTGCTTGACAGATTACCAGGGGGCCAAGAAAGC AAGGCAACTTCCCCTCCCCTCAATGCCTCAAATATTCCATCAACTGTTGCATCTAGAGCATCCCCACGAAAGCTCTTCTT TTAA
Protein sequence (LotjaGi6g1v0153100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMLPLTNPNELLSSSSIPTPIRHNALSSSSFSLRKCVSLNPTTRRISTPDPLRRRFGPVTCTFAPIDNAKIKVVGVGGG GNNAVNRMIGCGLQGVDFYAINTDAQALLHSAAENPIKIGELLTRGLGTGGNPLLGEQAAEESKEAIANALKGSDLVFVT AGMGGGTGSGAAPVVAQISKEAGYLTVGVVTYPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTALQDA FHLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGIVY NITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTMIATGFSQSFQKTLLTDPRAAKLLDRLPGGQES KATSPPLNASNIPSTVASRASPRKLFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 427 | 423 | 1.6E-243 | – | |
| PANTHER | 5 | 427 | 423 | 1.6E-243 | – | |
| TIGRFAM | 66 | 380 | 315 | 4.5E-126 | ||
| Hamap | 67 | 397 | 331 | 36.342 | ||
| Gene3D | 68 | 374 | 307 | 4.8E-118 | ||
| SUPERFAMILY | 70 | 266 | 197 | 9.42E-70 | ||
| Pfam | 71 | 231 | 161 | 4.3E-40 | ||
| SMART | 71 | 263 | 193 | 3.1E-108 | ||
| CDD | 87 | 372 | 286 | 5.62984E-143 | ||
| ProSitePatterns | 102 | 136 | 35 | - | ||
| ProSitePatterns | 155 | 176 | 22 | - | ||
| PRINTS | 156 | 176 | 21 | 3.5E-49 | ||
| ProSitePatterns | 164 | 170 | 7 | - | ||
| PRINTS | 184 | 205 | 22 | 3.5E-49 | ||
| PRINTS | 247 | 269 | 23 | 3.5E-49 | ||
| SUPERFAMILY | 265 | 380 | 116 | 1.26E-38 | ||
| SMART | 265 | 382 | 118 | 3.0E-42 | ||
| PRINTS | 270 | 291 | 22 | 3.5E-49 | ||
| Pfam | 280 | 373 | 94 | 2.3E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi6g1v0153100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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