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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0153100 |
| Transcript ID | LotjaGi6g1v0153100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division FtsZ-like protein; TAIR: AT5G55280.1 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1; Swiss-Prot: sp|Q42545|FTSZ1_ARATH Cell division protein FtsZ homolog 1, chloroplastic; TrEMBL-Plants: tr|K7LA88|K7LA88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0153100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43120309..43122628) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAATGCTTCCCCTCACAAACCCTAATGAGCTTCTCTCATCCTCCTCCATTCCCACTCCAATTCGCCACAATGCATT GTCATCCTCCTCCTTTTCCCTCAGAAAATGCGTTTCTCTAAATCCTACAACAAGAAGAATCAGCACCCCAGACCCCCTAC GACGTCGTTTTGGGCCAGTTACCTGCACCTTCGCGCCCATTGACAACGCCAAGATTAAGGTTGTCGGTGTTGGTGGCGGC GGCAACAATGCCGTTAACCGCATGATTGGTTGCGGATTACAAGTGGGTTTCATTTTTTCCCTACCCATTTTGTAATTACT GATCAAGTTTTGTTTTTTATTCAATTTTGAAAAATGGGTCAGTTATTTTATTTATTTATCTATCAACAATGTGGTCACTG TGTTGGGTTTGTTTCTATTTTGGAGAGTTGCTTTTATCATGGTTGCAATTTTTGTAATCACTTCCATGGTGAAGACAGTG TAGACTAAGCTGTTATTGGTGTTTTGCTGCTGCACTGTAACTAAGTTGATTGCTAATGTTGAATTCTTCTGCACTTTATT TTACTAACCAGGGTGTAGATTTTTATGCTATAAATACTGATGCTCAAGCACTGTTGCATTCTGCTGCTGAGAATCCTATC AAAATTGGAGAACTTCTGACCCGTGGTTTAGGTCAGGCGCTCGCCTTCTATGCCTAGGAGGTTCCTTTGTGCTCAATTGT AACTTGAATTTATTTTGACTATTATGTGACTTTTGTGTCTGTGTAGCCTCACTCTAATGTGGCCTTTGATTCGGATTGCT TGATAGAGATGCAGGTACTGGTGGGAATCCACTTTTGGGGGAACAAGCTGCTGAGGAATCAAAAGAAGCTATTGCTAATG CTCTTAAAGGCTCAGATTTGGTGTTTGTAACTGCTGGCATGGGCGGGGGTACAGGGTCTGGTGCTGCGCCAGTCGTGGCT CAAATATCAAAGGAGGCAGGTTACTTGACTGTAGGTGTTGTTACATATCCCTTCAGCTTTGAAGGACGCAAAAGATCGTT ACAGGCAGGTGTCATTTCTTCCCTTACTTGAGAATAGGCTAGTATGCTGCTTAGTATGTAGAAGCTACTTCCAATGTTAC ATACTTACACGATACCGCTTTCATTATTTTGCTCAAAGTTGAAATTCCCCCTTTTTTTTCATGAGTTATACTTATACCCT TCTAATTGCTGAAGTGTGATCATGTATTCCATCAATTGCTTGATGTTTATTTTTCGTTCTTCCAAGATATTGTGTTGCTC CGATAAGCGCTTGTGTGGTTAAAATTTACACGTTCTCTTCCAGGCACTTGAAGCCATTGAAAAGCTGCAGAAAAATGTGG ATACACTTATAGTGATTCCAAATGACCGTCTGCTTGACATAGCTGATGAGCAGACTGCGCTGCAGGACGCTTTCCATCTT GCAGATGATGTTCTACGGCAGGGAGTACAGGGGATATCAGACATCATAACAGTGAGTTGATTAATAATTTATTCATATTT CCTGTCTGGGCATTATAAAGTGTAAAAGTTCAGTGATCCCCTTGATTGGTTGATTGCAAAGAGAACAAGGAGGCATTAGA GGCATGAATCATTCTTCACCTCCTTTCTCCCAATTCATTTGAACGACTCCTCCTCTATCATAATTGGACATTTATTTAAT TCTCGGGCTGATTTTTCTGTTGTATCTTTTCACAGATACCTGGCCTTGTAAATGTGGATTTTGCTGATGTAAAAGCTGTG ATGAAAGATTCTGGAACTGCAATGCTTGGAGTAGGTGTTTCCTCCAGTAAAAACCGTGCAGAAGAAGCTGCTGAACAGGC TACTTTGGCTCCTTTAATTGGATCATCTATTCAGTCAGCTACTGGGATAGTATATAATATTACTGGAGGAAAAGACATAA CTCTTCAGGAAGTGAATAGAGTGTCTCAGGTATTTCATCAGAACTTGCTGAAGGAGCATTTTAGCATTCCTTTTTGCTCT CTGATCTTCTGAACTTGTTTACTGATTTTCCAACCTAATAAATTTTATAGGTCGTGACAAGTTTAGCCGATCCTTCTGCC AATATTATATTTGGGGCTGTTGTTGATGATCGCTACAATGGGGAGATTCATGTGACCATGATTGCAACTGGCTTCTCACA GTCCTTCCAGAAGACACTACTAACAGATCCAAGGGCTGCAAAGCTGCTTGACAGATTACCAGGGGGCCAAGAAAGCAAGG CAACTTCCCCTCCCCTCAATGCCTCAAATATTCCATCAACTGTTGCATCTAGAGCATCCCCACGAAAGCTCTTCTTTTAA
CDS sequence (LotjaGi6g1v0153100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGCTTCCCCTCACAAACCCTAATGAGCTTCTCTCATCCTCCTCCATTCCCACTCCAATTCGCCACAATACAAC AAGAAGAATCAGCACCCCAGACCCCCTACGACGTCGTTTTGGGCCAGTTACCTGCACCTTCGCGCCCATTGACAACGCCA AGATTAAGGTTGTCGGTGTTGGTGGCGGCGGCAACAATGCCGTTAACCGCATGATTGGTTGCGGATTACAAGGTGTAGAT TTTTATGCTATAAATACTGATGCTCAAGCACTGTTGCATTCTGCTGCTGAGAATCCTATCAAAATTGGAGAACTTCTGAC CCGTGGTTTAGATGCAGGTACTGGTGGGAATCCACTTTTGGGGGAACAAGCTGCTGAGGAATCAAAAGAAGCTATTGCTA ATGCTCTTAAAGGCTCAGATTTGGTGTTTGTAACTGCTGGCATGGGCGGGGGTACAGGGTCTGGTGCTGCGCCAGTCGTG GCTCAAATATCAAAGGAGGCAGGTTACTTGACTGTAGGTGTTGTTACATATCCCTTCAGCTTTGAAGGACGCAAAAGATC GTTACAGGCACTTGAAGCCATTGAAAAGCTGCAGAAAAATGTGGATACACTTATAGTGATTCCAAATGACCGTCTGCTTG ACATAGCTGATGAGCAGACTGCGCTGCAGGACGCTTTCCATCTTGCAGATGATGTTCTACGGCAGGGAGTACAGGGGATA TCAGACATCATAACAATACCTGGCCTTGTAAATGTGGATTTTGCTGATGTAAAAGCTGTGATGAAAGATTCTGGAACTGC AATGCTTGGAGTAGGTGTTTCCTCCAGTAAAAACCGTGCAGAAGAAGCTGCTGAACAGGCTACTTTGGCTCCTTTAATTG GATCATCTATTCAGTCAGCTACTGGGATAGTATATAATATTACTGGAGGAAAAGACATAACTCTTCAGGAAGTGAATAGA GTGTCTCAGGTCGTGACAAGTTTAGCCGATCCTTCTGCCAATATTATATTTGGGGCTGTTGTTGATGATCGCTACAATGG GGAGATTCATGTGACCATGATTGCAACTGGCTTCTCACAGTCCTTCCAGAAGACACTACTAACAGATCCAAGGGCTGCAA AGCTGCTTGACAGATTACCAGGGGGCCAAGAAAGCAAGGCAACTTCCCCTCCCCTCAATGCCTCAAATATTCCATCAACT GTTGCATCTAGAGCATCCCCACGAAAGCTCTTCTTTTAA
Protein sequence (LotjaGi6g1v0153100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMLPLTNPNELLSSSSIPTPIRHNTTRRISTPDPLRRRFGPVTCTFAPIDNAKIKVVGVGGGGNNAVNRMIGCGLQGVD FYAINTDAQALLHSAAENPIKIGELLTRGLDAGTGGNPLLGEQAAEESKEAIANALKGSDLVFVTAGMGGGTGSGAAPVV AQISKEAGYLTVGVVTYPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTALQDAFHLADDVLRQGVQGI SDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGIVYNITGGKDITLQEVNR VSQVVTSLADPSANIIFGAVVDDRYNGEIHVTMIATGFSQSFQKTLLTDPRAAKLLDRLPGGQESKATSPPLNASNIPST VASRASPRKLFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 5 | 412 | 408 | 3.6E-236 | – | |
| PANTHER | 5 | 412 | 408 | 3.6E-236 | – | |
| MobiDBLite | 8 | 29 | 22 | - | – | |
| TIGRFAM | 49 | 365 | 317 | 9.1E-124 | ||
| Hamap | 50 | 382 | 333 | 35.334 | ||
| Gene3D | 51 | 359 | 309 | 7.2E-116 | ||
| SUPERFAMILY | 53 | 251 | 199 | 2.22E-67 | ||
| SMART | 54 | 248 | 195 | 2.8E-104 | ||
| Pfam | 54 | 216 | 163 | 9.4E-38 | ||
| CDD | 70 | 357 | 288 | 6.34274E-140 | ||
| ProSitePatterns | 140 | 161 | 22 | - | ||
| PRINTS | 141 | 161 | 21 | 3.3E-49 | ||
| ProSitePatterns | 149 | 155 | 7 | - | ||
| PRINTS | 169 | 190 | 22 | 3.3E-49 | ||
| PRINTS | 232 | 254 | 23 | 3.3E-49 | ||
| SMART | 250 | 367 | 118 | 3.0E-42 | ||
| SUPERFAMILY | 250 | 365 | 116 | 1.17E-38 | ||
| PRINTS | 255 | 276 | 22 | 3.3E-49 | ||
| Pfam | 265 | 358 | 94 | 2.1E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi6g1v0153100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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