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LotjaGi6g1v0153600.1

Overview

Field Value
Gene ID LotjaGi6g1v0153600
Transcript ID LotjaGi6g1v0153600.1
Lotus japonicus genome version Gifu v1.2
Description Vacuolar protein sorting-associated protein VTA1 like; TAIR: AT4G26750.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SZ15|LIP5_ARATH Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5; TrEMBL-Plants: tr|I1M6L7|I1M6L7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0153600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:43159381..43164793) extracted from Lotus japonicus Gifu genome v1.2.

TAAATTTATTTATGAGCAATATTATTTAGTGACGAAGGAATGAGACAGGAGCTTTGAAAAACGACGTCGTACCCTCTGCA ACCGAACATCGAGTCATTGACAAATCGATAGTTTCCTTCGAAATCAAGCTTCTCTGTCAGTCGTTTCAATGGCGAGCGAA ACCGAGCCTGCGAAGTTGCTCTTGCCTTACCTTCAACGCGCCGATGAGTTGCAAAAACACGAACCTCTCGTCGCTTATTA CTGTAAAACCCTCTCTCTACATCACCGATTTTGATTTTGATTTTTTCCCAATTGAATTTTTTGCCAGTTTTTAATCTCAT ATTACATCATGATTTTCTTAAATTCAATCACTTGTGAAGTCAATTAATGTCAATTTTCATTTAATTTGATCCCACTTAGT TATGATTACTATTAATATCCCAATTTAGTTGAGTAATTTTGTTGGTTATGGTAAATTAAGGTCGATTATATGCGATGGAG AGGGGGATGAAGATTCCAAACAGTGAGCGCACCAAGACTACCAATGCTTTGTTAGTTTCCCTCATGAACCAGCTTGAAAA GGTTTTATTTTATATTTACTGTGTTTGAGTTGTTAGTTAAATTAGTATTTACAGTTAGTCATCACCACATTAGTTCCTTC ATAATGTTAATCGAATTTGTCGTCGCATCAGGAATCGAATTTAATTTGATTGACTGAATATATCTTCCAAGGACTGATTT GAGTAGCTAGTAGCCTAGTATTATGTATTTAGTTTTCATTGTATAGGGACTAATATGACTGACACTGAGTCCTTTAAGAA CTAATGTGATTATTTAATTACAGTGCTGTGTTACTTTGTTTCCCTCATTTGGGTTAGGCTTTTCAATATTGGTGATTGTT TCACAGTTGGGCGCTATTTGGTCTATTGTGACTTGTGAGAAAATACTCAAAATAGTGTATGAATGTATGTGCTTTTAACA TTTCATTCACCTTATGATTTTGTTTCTCTAATGTGGAGAGCGTGCCATGGAGTATTTGAAAATTTGTATGTGGAACTTTT GGTTTATTTGGGATTCTGAGTGGTTAAAATTGTAGAGTCTAATTAAGTGTTTGAAATGTAGACAAATATCAGTGTTTTTC TGAAAAGTGAAAATAAAATATGCATCTGAGTCACCGCCTCACTTGCACTGCTGGAAAAGCAATTGCCCCATGCAAAAAGT CAAAATGCAGCTCACATCACTTTGTCTATGAATTCATCAGTTGCTTGTGGCTAAGAAGTTTTTGTTTTCTGAATTGATAT ATTTGCTTGTTGATGTTCAATCCCCAGCTTACTTAGATCGTTATATTTTTTTTTTCCCTTATCCTTACAGGATAGGAAGA CAACCAAGTTGGGGCCTGAAGATAATTTATATGTTGAGGGATTTGCATTAAATGTGTTTGGAAAGGCAGACAAACAAGAT CACGCTGGAAGAGCAGATTTGTATGGTTAATTGGTTATTAATTTTTTTTCCGATGCATATAACCGTCATATTCTTTGGGA TGATGCATTTTAAATGCCTAAGCATTCCAGTTGGCTTCAAATTTCGATGCGTTTCAATTCACTTTTGTGTTGAGGCCTAT CAGGATTCAGGAATCACAGTTCTTGAGCGGATGATTTTCACTATGCTTGTTATATATGTAGTATGTGAGTAAACATGATA TGAGAAATGCTAGTAACAATCTCTTTCCGAAAAACTCTCATATTTGTTGAAATCCATTTCAGGTCCACTAAATAATTTGC CCACTCCCAAATTTTTCGGCCTTACCCCTTATTTGGTAGGGACCCACATGAATTTCAACCAATTAGAGTGTGTCAGCAAG AGAGTATTAGAGAGTTTTGCTATTACTCCTTATGTACATATTTAGGATTAGGATGGAAACATATGATTCGGTTATGGATC GAGGACTTCTTCCTGATTGCAATCTTCCATCTTATTTTTCCTTTCTTGCTGGAAGATTTTGGAGGCTTGGGAGCTGCAAA CTCTATTCTGAAGAGTTTTCAGTTGATCAACCTCAATATTAGATTGATCTTATTTCTAGATGTTCTCATTTTGCTATCCG TCAACCAACTGCAATCTATTTCGTGCTGAAATGTCTATCTTCATATTTCCGATATTAACCAACATCTTCACGAGTCATGA CATTTATTTTGTACTCTGTCTTGCAATACAACTATAAATAATGATGCCATTCTCAATATTATAATGACAAGCGTGAGCAC CTAAAGTATTTACTCTTTCTGCGCAAAAAAATTGGTGTTCCCCACCTCTTTATCTTTGTCTACCTTTATTTATTTGTTTG CCTAAATTAGTCTTTGCGCTTTCTTGTTCCTTCCTTATGAATATCACACTCACTCACTCCACGAATCAAATATCTGTTTT TTACCAAATGGTTGCTCCTATGCCTTTCTGCTGTTTGTCAATTAGCATTATTTTTGTCTGTGATCCGGTTTTAACATATG TTTCTGCTGACACAACTTGCAGGAATACAGCAAAGACATTTTATGCTGCTAGCATCTTTTTTGAGATTCTTAATCAATTT GGGACACTTGAACCTGATGTGAGTATCTGGCTATTGCATCAAGCCTTCCCTTTGTGCAATTCTCATGGCTTTTACAGGAT TCTTTTGTGGCTTTCATATTTGGCAGTAGTTTACTGCAAAAGTATAACCTAATTTAATGGCTAGTTTAACATTTTTTGGA GTTTCTCTTACAGCTGGAGCAGAAACAGAAATATGCAGCCTGGAAAGCAGTAGATATAAGAAAGGCTTTGAAAGAAGGAA GGAAGCCCACACCTGGCCCACCTGCTGGTGATAATGATATGTCAATTCCATCAAATGCTCCTAGCAATACATATGTATGG TTTGAAACTCAACCTAGTCCAGTCTTGTGTTTGAGCAGTGTTATTGAAATATCTATTATTGCATATGAAACCTCAAAATT ATATGGTTGAACAGAGAAACCTCTAAAGAAACTAAATCAAGAATCAATATTTTTTACACAAGTAAAGATTTTATGTTATT ACCAGTTTACCACAGCGACATTTGCGTAAAAGAAGCACGCAAATGTCTATAGCGTGAAACACTAAAGATAGGTTAGTGAG AAAAACTATTGGTGGGGAAAATGAAAAAGAAGCACGCAGTTCCCTTAGAAAAGAAGCGTTAAATTGTGGGGAGAAAATAA TTATTTCAAGCCTTTCATTTCATGTATTTATGCATTGCATCTATACTGTGGCTTGGGAGAATCATGAAGAAATCCGCTAC TAGGGTAATTATAAGTATTCCTTTTTAATATGAAGTTTTGAAACTGAAGGTTTTCTTATCTTTTCATTGTTGTTGACCTT TCTTTTTATTAGCCATCCTCAGTCATCACTTTGAATGACCTTTCTTTTTGTTGGAACGACATAATCTCAGTTCCTCTTCT ATACCTGTAACGCGTCAGCCTGTTTTCTTCAAATAGAAGCACATTTAAATGTTGTATGGTGTATGGAAACGCACTTTGAT TTGTGAAACAAAGACTGATATTAAGTAAAGTAGAAACCGGGGATCTGTAGATTTAATGAACTCATAAATGAAAAATTCCT TGCAATTTGATAATGTTGAGATTTTGAGTTCATATTAGTATTCCAAAGCGTTACTTCTCTTTGTTGGTTGGATCTCTATA AAGTTGCTTTAAGTTTGTGAATGAGGTTCATTCTAAAATCAGGCAATAGACAATGGTTTTTCTGTTTTTCCCCAAACAAG GTCTTTTTCTAATATCTGATGCATTTTATATTATGCAAAATGCACAAATTGATAAATAAATGTAAACAGATAACCTTATG CTGTGTTTACTATTGCAGGACCTTGGAACTACTGGAACTTCAGTTACCAGTCCCGGACCAGAATCTGATCCATCTCATGA TTATCATGACCCTGTCAACTACCAGCATTCGCGAAACGTTCATCCTGCAGCTGACTTCCATGATACTATTGACAACCAGC CTTCTGCAAATAACCCACCATCTATGCAGTTTCATGATAGAGTTAGTAATAATCTGAATTCTTCCAACATATCTTCATCG TCTCCTCCTTATCCATCTACAGGTTACCCTTCCCAAGATTATTACCATCCTCCACCATCCCAAGATTACCATCCTCCACC ACCCCAAGATTACCATCCTCCACCACCCCAAGATTTCCTTCCTGGTCCACCTTCCCAAGATTATAATTCACCACCACCTG CCAGATCAGAAGGTCCTTATTCTCCGGGATACGACCATCAACATTACTCATCAGATCCACAGCATTTAGCTCCCAATTAT CCTTCACATGAAACTCCCTCATATCCACTCCCACATTTTCAGTCTTATCCTAGTTTTTCAGAAAGCACCCTACCATCAGT CCCATCAAACTACATATATCAAGGGTCTGATGCTGCTTCTTATTCTTCACAGTCAGCTCCTCTGACTACAAACCATTCAT CAAGTACCCTGCGAAATTCCCTCAGCAGAAATGGAACGATCTCTGAACCTAAGTCAACTACTCAGACATACCAATATGAC AGTAACTACGACCCTCCACCTTTAAAGTTAGCAGAGGCACAGAAAGCAGCAAGATTTGCTGTTGCGGCACTTGCGTTTGA TGATGTGCCAACTGGAGTTGACTTTTTGAGGAAATCACTTGAGTTGTTGACTAATCCATCATCTGGTGAAAACAATTAAT TTAAACTTAATTGGGTTTTCATGGAGTTTCTACCTTATATTTTTATGTACATAAACTTAATGGGGTTTTCAGTATAAGAA AGTGTGAAGAAATTCAGTGAACACGAATTGAATGTAATACTGATATATGCTTCCATATTTTTTTGTCTAGGAGTATGTCT ACTAGATGGGTCTCAGTAATGTCTGTCTGAAACAAATTCACCTTTTCTATTTTGATTCTCGCCTCCCTTCCTTTTTCCTG AACTTAAAGCAGTTTCACCTTTATTCCTAATCACCCTCGCATACAAGGATGGTTCAAGGGGTAATCATGTTTGAGAGTTA ATATATTATTTGATCTTTAAAAGTGACAATCTATGTTGTTTTAGTTTATGAAAGTGTTTGTAAGTATAATCAAATTAGTT TCTGATCATGTCAACTTCTCCCCAAATTTATCTTTCCATCTTCACTAATTTATGTGTCAACTACAGATAATGTGTAACGA AAAGTTGATGTGGCATGTTAACTAATAGCTATAGTCTATATATGTCGGGCATAAAGTGTTCATGTATGCTTGCATGTATG CCTGTACAAATGTCATGTGTTACTTACTTGATAGAAGGATGATTGCTTGATAGAAGGATGAATTTGTGAATAAGTTGATA CATGTGAAAACTTTAAGTTGTGCGGACTTTTAAGGGACCAAAGCAACTACAGG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0153600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAGCGAAACCGAGCCTGCGAAGTTGCTCTTGCCTTACCTTCAACGCGCCGATGAGTTGCAAAAACACGAACCTCT CGTCGCTTATTACTGTCGATTATATGCGATGGAGAGGGGGATGAAGATTCCAAACAGTGAGCGCACCAAGACTACCAATG CTTTGTTAGTTTCCCTCATGAACCAGCTTGAAAAGGATAGGAAGACAACCAAGTTGGGGCCTGAAGATAATTTATATGTT GAGGGATTTGCATTAAATGTGTTTGGAAAGGCAGACAAACAAGATCACGCTGGAAGAGCAGATTTGAATACAGCAAAGAC ATTTTATGCTGCTAGCATCTTTTTTGAGATTCTTAATCAATTTGGGACACTTGAACCTGATCTGGAGCAGAAACAGAAAT ATGCAGCCTGGAAAGCAGTAGATATAAGAAAGGCTTTGAAAGAAGGAAGGAAGCCCACACCTGGCCCACCTGCTGGTGAT AATGATATGTCAATTCCATCAAATGCTCCTAGCAATACATATGACCTTGGAACTACTGGAACTTCAGTTACCAGTCCCGG ACCAGAATCTGATCCATCTCATGATTATCATGACCCTGTCAACTACCAGCATTCGCGAAACGTTCATCCTGCAGCTGACT TCCATGATACTATTGACAACCAGCCTTCTGCAAATAACCCACCATCTATGCAGTTTCATGATAGAGTTAGTAATAATCTG AATTCTTCCAACATATCTTCATCGTCTCCTCCTTATCCATCTACAGGTTACCCTTCCCAAGATTATTACCATCCTCCACC ATCCCAAGATTACCATCCTCCACCACCCCAAGATTACCATCCTCCACCACCCCAAGATTTCCTTCCTGGTCCACCTTCCC AAGATTATAATTCACCACCACCTGCCAGATCAGAAGGTCCTTATTCTCCGGGATACGACCATCAACATTACTCATCAGAT CCACAGCATTTAGCTCCCAATTATCCTTCACATGAAACTCCCTCATATCCACTCCCACATTTTCAGTCTTATCCTAGTTT TTCAGAAAGCACCCTACCATCAGTCCCATCAAACTACATATATCAAGGGTCTGATGCTGCTTCTTATTCTTCACAGTCAG CTCCTCTGACTACAAACCATTCATCAAGTACCCTGCGAAATTCCCTCAGCAGAAATGGAACGATCTCTGAACCTAAGTCA ACTACTCAGACATACCAATATGACAGTAACTACGACCCTCCACCTTTAAAGTTAGCAGAGGCACAGAAAGCAGCAAGATT TGCTGTTGCGGCACTTGCGTTTGATGATGTGCCAACTGGAGTTGACTTTTTGAGGAAATCACTTGAGTTGTTGACTAATC CATCATCTGGTGAAAACAATTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0153600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGMKIPNSERTKTTNALLVSLMNQLEKDRKTTKLGPEDNLYV EGFALNVFGKADKQDHAGRADLNTAKTFYAASIFFEILNQFGTLEPDLEQKQKYAAWKAVDIRKALKEGRKPTPGPPAGD NDMSIPSNAPSNTYDLGTTGTSVTSPGPESDPSHDYHDPVNYQHSRNVHPAADFHDTIDNQPSANNPPSMQFHDRVSNNL NSSNISSSSPPYPSTGYPSQDYYHPPPSQDYHPPPPQDYHPPPPQDFLPGPPSQDYNSPPPARSEGPYSPGYDHQHYSSD PQHLAPNYPSHETPSYPLPHFQSYPSFSESTLPSVPSNYIYQGSDAASYSSQSAPLTTNHSSSTLRNSLSRNGTISEPKS TTQTYQYDSNYDPPPLKLAEAQKAARFAVAALAFDDVPTGVDFLRKSLELLTNPSSGENN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46009
1 301 301 7.7E-120 –
Gene3D
G3DSA:1.25.40.270
2 152 151 1.3E-52
IPR023175
Pfam
PF04652
13 148 136 3.6E-43
IPR039431
MobiDBLite
mobidb-lite
147 413 267 - –
MobiDBLite
mobidb-lite
164 189 26 - –
MobiDBLite
mobidb-lite
218 256 39 - –
MobiDBLite
mobidb-lite
267 306 40 - –
PANTHER
PTHR46009
299 454 156 7.7E-120 –
MobiDBLite
mobidb-lite
336 410 75 - –
Gene3D
G3DSA:1.20.5.420
416 453 38 7.1E-9 –
Pfam
PF18097
419 452 34 4.4E-10
IPR041212

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0153600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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