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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0154200 |
| Transcript ID | LotjaGi6g1v0154200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GrpE protein homolog; TAIR: AT5G55200.1 Co-chaperone GrpE family protein; Swiss-Prot: sp|Q8YEV0|GRPE_BRUME Protein GrpE; TrEMBL-Plants: tr|A0A151SBL3|A0A151SBL3_CAJCA GrpE protein homolog; Found in the gene: LotjaGi6g1v0154200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43253066..43256729) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGCAAAGGGCAATATCGTCCAAAAAGAATGATGAACCTTAAACCATCCTAAACCCCAGACCAGATTCTCCATCCAGC CCAAAACACCAACCTTTCTTTCCGTCCACGCAAATCTTCTTCCCGTCGTTTATTTTCTCAGAAAACCAGTTTCACTTTCT CAATCTCAATCTCAATCTCATTCTCAAATTTCAATTCCTTCGTTTTCTTCTTCTTCTTCTCTTCAACCATGCTTAGGGTC TTGTCTCGTGCCTCCAGAAGCTTCATGCTTCTCTCTGCTTCTCACAAACCCCAACCTTTTTCCACCCCCTTCTCCTCGCA TCACTTCCATTCCATCGTTCATCAATCACCCAACAAGGTAAACCCCACTTGTAATTCGCAACAAAAATTCTAACTTTCCG CAATTTTGTCATCTGGGGTTTTATTAGGGTTTTAGGATTCACTCAAAATTGATTTGGGTATAAACTATTGAATGAAGTTT GATTTTATTATTTTTTTGTCTATATTTATGATGATTTTAGTTTTGGTTATACATTGTAAAATTCTCATTAAATTCCATGT ATGCTTGCTAATATTTCAGCTGATTCCACTTCAAGTCAATCTGTTGAACCGATCCATGAATTCATCCTTGACTCCAATTT TTGGATTTTCTTCGTCGGCCTCGCCTGAACCGGAAAGTCAGAATGAACAAGATAAAGCTGCTGCTGATCAAACCAAAGAA CCAGGTTCGATATTAGAATCTCAATCTCAATCTGACAGAAGAAAGGAATGGGGTTTTTAAATGAACTGTAATTTTTTTTT TCAGATGCAGAGCCAGAGAGTGAATGTGATAATCTATCCAGGGATGATTTAATAAAGCTTGTTGCTGAGAAGGAAGAACT TTTGAAGTCGAAGCAGGAAGACATTGTGGAAATGAAGGGTAAGGTTATGCGTTCTTATGCTGAGATGGAGAATGTTCTGA GCAGGACAAGACGCGATGCAGAGAATTCGAAAAAATTTGCTATACAGGTTTAAGTTTTGGCATTTTATATTGTGTGTTTC ATACCTCTTGCTCCCTAATTTTTTACTTTGGAACTTTGTGCTGAGTGGTTTCAAATGTGATGTAGAATTTTGCGAAGGGT TTACTAGATGTTGCTGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGATAGTTTTTCAAAAATTGAATCACCTAATGA CTCTGTTGAAGCAGCAAAACTCCTGAAAACACTTCTGGAAGGTGTTGAAATGACCGAGAAACAACTTGCAGAGGTAGACT GTTCTACTTTATGCTGAGGCTTTTTAGTTGCAGTGGTTATATGCAGTATTTTATCTGAGTCATTTTTATTCAAATTTTGA CCTCTTGTTGCAACTTTCTGCATTATATAGCTTTCGGATCAATGATAGAAAATAGGTGAAATCTGAAGTTTCATTGGGTT TGTGACAAGAGAGGGCACAAGGTCGATTGGCAGAGAGTACGAGGCAGTGTAGGCTCTGGTTGGTGGCTGTCTTAGTGTTG TTTAGACCTTCTAGGGTTGAGATTGGTTTCATCCTTTTAGGAATCTTGAAGAAAGAATGAAGAACTACATTAATTAGGTT TTAGAGGGTTGAATTGTTCATATTGTCTACTTGGAAAGTAGCCTTGATTGTCTAGAAAATTAAAGAAAACTGAGTAGAAG ACTAGAGAATATAAGAAAATTAGGTTTAAAATATCGGTCTTTAACTGAGAAAGAGCAGACCTAGTTCAATTACGTTACAG CTTACGAAGCTTCCTGCCCTAAGCTATCACTAGGGAATCACACCTATGGTTTGATTGTATCATGCATCCAATAAGATAGC AATTAGCATTGTTAATTTATAGATGTGATCATTCTGTTAAATAAAAAGCACTTCCTATTACTTATCCTCCAAGCATTAGG AATGGAATCCTGATGTTATAAATATTGAAACTTTCTAACATACTAAAATCATAGTAGAAACTTGGACACAAATACAACAC ATGAAAGTATAAGGGGATGCCAAGTCTAATCACCAACTAATACCACTATACAAGAAAATGTTAAGTTATTAAAATTCTTG TTGTTTAAAAAATATGAAAATATGAAATAAATAGAAGTGACAACCTAGTTAAGCTAATAACCATAAGTAACCATTGCTAG TAAGATTGTTGGAATTTTTCAATCACCCCCATAATCATAATGCCATGTTTATGAGAGTAGAGTGGTTCATAATAGAGTAG AGTGAAGCTGTCGGTAACATTTTATATTCTGTGTCATTGCGTCATTGTACCCTATTCTCTGAGGTTGACAGCTGCTGGCT ACTGCTTACAGGTACTTAAAAAGCATGGTGTTGAAAAATATGATCCTACAAATGAACCATTTGATCCAAACAGGCATAAT GCCATCTTCCAAATACCTGATGCTTCCAAGCCCCCAGGCACTGTTGGAGTTGTTTTGAAGGTACTTTACGTGATTCTTTG TTTAGGCATTGTGATTTAATTATTTTCTTATTTCAAAGTTTGCTTTAACGGTTAAACCTTGAAAACCGTTTGTTTTGTAT TTGATTAATTCCTTTTTGAGCGCATAATTTGCAATATAAGAAGTCTAGTTTGATGTGTGTCGATATTTATGACAAACTGT TATGTCAATCATGCTGAATTGCTCATTATTTCCATTTATGGTTGTCAAAGGGCTTTTACTTTGTAAATTCTTTGTCTAGG AGCTTTTGTTTCTCTTGATGTTGGAATAAATGAATGTGGTCAACTGGTCATGTTCTTGGCAGTTCCACCATCTGCCATTC TATTCCATTTCTCTCCATCCATCCAAACAAGGCTAAGTAATACTGTGGTTATATTTTGCAGGCAGGATATATGCTTTATG ATCGCGTTCTTCGTCCAGCTGAAGTTGGTGTGACGCAAGAAGTGGAGGACAATAACAGCTGAGTGATGATGGCATGAAGA AATGTCTGAGCAATGGAGTTCTTGTTGGACACCTTTCATTATCTTATTCAAATATGTTCACTGGTTCACTTTTGCAGGAC AGTATTTTGTCCCGCGCGGAAAGGACTGTTCTTTTCTCCTTATAACCCGAGTTTTAAACCTTTTTTTTGTAGTGATAAAA TACCATACACGATGGGTTTGATTCTAAGATTTTGGTTGTATTCGTTTGCTAAACCAAATTCACTAGTTCTAGTCCCTTTC TTTTGCTATGAAATTATTGAGAGCCTGAGTAACAACCGCACGAATAAAGTTGAAGAAAACATGGAATCACTTTTATCTAC TTCCACACCCCTTGAATTGTAACTATTTCCCCCTTTCCCCTGTTTTCTTGGAGAGAAATATGGTGATTTCGTGTGTTTGA AAAATTGCAGAGGAAAAATCGTGGTGGTACATTGTGTACTTATGATTAGGGCTATCCAAGATTCCTCGCCCTAATACGAA ACACGACAAACTTGTCCATTTTGTTAGTCATTGGGTTGGTTGCGGGTATGGGTGGACCATGAAATTGGGTTCAAGTGATT TTGGGCGATCGGTGTCGGTTTGGACTCCAACCCGACCGAAGTAGATCTTTAAAAAATATCTTCTACTCAGGTAGCCCGGT TTGTGAGTGAACCCTAGCCTTTTAAGTAAGACATTCTCACTTGCGCCACACCACTCACTCATTA
CDS sequence (LotjaGi6g1v0154200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTAGGGTCTTGTCTCGTGCCTCCAGAAGCTTCATGCTTCTCTCTGCTTCTCACAAACCCCAACCTTTTTCCACCCC CTTCTCCTCGCATCACTTCCATTCCATCGTTCATCAATCACCCAACAAGCTGATTCCACTTCAAGTCAATCTGTTGAACC GATCCATGAATTCATCCTTGACTCCAATTTTTGGATTTTCTTCGTCGGCCTCGCCTGAACCGGAAAGTCAGAATGAACAA GATAAAGCTGCTGCTGATCAAACCAAAGAACCAGATGCAGAGCCAGAGAGTGAATGTGATAATCTATCCAGGGATGATTT AATAAAGCTTGTTGCTGAGAAGGAAGAACTTTTGAAGTCGAAGCAGGAAGACATTGTGGAAATGAAGGGTAAGGTTATGC GTTCTTATGCTGAGATGGAGAATGTTCTGAGCAGGACAAGACGCGATGCAGAGAATTCGAAAAAATTTGCTATACAGAAT TTTGCGAAGGGTTTACTAGATGTTGCTGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGATAGTTTTTCAAAAATTGA ATCACCTAATGACTCTGTTGAAGCAGCAAAACTCCTGAAAACACTTCTGGAAGGTGTTGAAATGACCGAGAAACAACTTG CAGAGGTACTTAAAAAGCATGGTGTTGAAAAATATGATCCTACAAATGAACCATTTGATCCAAACAGGCATAATGCCATC TTCCAAATACCTGATGCTTCCAAGCCCCCAGGCACTGTTGGAGTTGTTTTGAAGGCAGGATATATGCTTTATGATCGCGT TCTTCGTCCAGCTGAAGTTGGTGTGACGCAAGAAGTGGAGGACAATAACAGCTGA
Protein sequence (LotjaGi6g1v0154200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRVLSRASRSFMLLSASHKPQPFSTPFSSHHFHSIVHQSPNKLIPLQVNLLNRSMNSSLTPIFGFSSSASPEPESQNEQ DKAAADQTKEPDAEPESECDNLSRDDLIKLVAEKEELLKSKQEDIVEMKGKVMRSYAEMENVLSRTRRDAENSKKFAIQN FAKGLLDVADNLGRASSVVKDSFSKIESPNDSVEAAKLLKTLLEGVEMTEKQLAEVLKKHGVEKYDPTNEPFDPNRHNAI FQIPDASKPPGTVGVVLKAGYMLYDRVLRPAEVGVTQEVEDNNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 23 | 283 | 261 | 9.2E-137 | – | |
| PANTHER | 23 | 283 | 261 | 9.2E-137 | ||
| MobiDBLite | 63 | 78 | 16 | - | – | |
| MobiDBLite | 63 | 104 | 42 | - | – | |
| Hamap | 73 | 277 | 205 | 18.206 | ||
| MobiDBLite | 79 | 104 | 26 | - | – | |
| Pfam | 82 | 276 | 195 | 1.3E-47 | ||
| Gene3D | 103 | 220 | 118 | 1.0E-20 | ||
| Coils | 104 | 131 | 28 | - | – | |
| SUPERFAMILY | 112 | 221 | 110 | 2.75E-22 | ||
| CDD | 127 | 275 | 149 | 1.45905E-57 | ||
| PRINTS | 133 | 149 | 17 | 9.5E-16 | ||
| Gene3D | 221 | 277 | 57 | 1.2E-18 | ||
| SUPERFAMILY | 222 | 277 | 56 | 4.18E-17 | ||
| PRINTS | 229 | 244 | 16 | 9.5E-16 | ||
| ProSitePatterns | 232 | 275 | 44 | - | ||
| PRINTS | 256 | 275 | 20 | 9.5E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Adenyl-nucleotide exchange factor activity | Stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Protein homodimerization activity | Interacting selectively and non-covalently with an identical protein to form a homodimer. | ||
| Molecular function | Chaperone binding | Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. |
Expression pattern of LotjaGi6g1v0154200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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