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LotjaGi6g1v0155700.1

Overview

Field Value
Gene ID LotjaGi6g1v0155700
Transcript ID LotjaGi6g1v0155700.1
Lotus japonicus genome version Gifu v1.2
Description WRKY transcription factor; TAIR: AT1G62300.1 WRKY family transcription factor; Swiss-Prot: sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6; TrEMBL-Plants: tr|K7LA71|K7LA71_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0155700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:43476889..43480683) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTTGTTGCCGCGTCTATTGCATCTCTCTATCCTCTGACTTCAACCTAGACAGAATCCACACCCTCTCTCTTTCTCTC TCTAAGAAATTTGTGGGCATGAACTAGATCATGACTCTTCTTTGATACTTATCCAACCACTTTCTATGTCCCCATTAAAC CAAGTTTCTTCTTATTCCATAGCCAAACCCCACACCCATACATAGAAGACTCACTTCTTCTAAAGAGTACAAAGAAAAGC TCGAAGTTATTATTATATAACTAATAATGGATCAAGTCACCTCCAATGTTGATGATGCAGTTGCACATTCTTCTCAAGTC ATGTCGTTTAATGGTAAACGACTAATCATGGATGAGATGGATTTCTTTGCAGAAAAGAAGTCAAGTCCAGTTATTAGTGA TCAAATGGTGCACCAAATGGAGCTTCATGTTGATGTAGGCAAAGCAAACTCTAAGACTTATAATCTTTATTTTGTAATTT ATCTTCAGACATAAATCTTATTTTTTTTCTTCTCTGTGTTGTAATTTGTAGACTAGTTTAGATCTCCTCACAAAGATTTC CCCAAGCAACAGACTAACTGTGGAAGATGAGGCATTGGAGGCCAAGGATGATAAGAGAAATGAGGTATACTTAATTATCT TGATATATGTTCTTGTATACTTTTAATTGAGCAATCTTATAATCAGTGCGACACCAAGCAGACACCCAATGCAAAGAAAT ACATTTATGAGCTTATTTACCAAATTTAATTTAAAACATATATTTCAAAAATTAATTAGTACCTCTCAAATATAATTTTT TTAGGTGTTTGCTGTGTGTCACATTGTATGAGTATCGGCAAATCATTATTGTCTTGATACATATTTGTATGAGAACATGT TTTTCCTTGTTTTGGGTATAGTATGAAGCATTGCTAGCTGAATTGCACCACTTGAATGCTGAAAATCAACGCTTGAGAGA GCTGGTTGATCAGGTCAACAATGACTACAGTGCCCTATACAAGCATATTATGAAGCTGATGCAGAAACAGCAGACAAATG ATGAGGTAATAGTTTTGATGAAAAATTTTTATGGAAAATCAAAGAAATAATCCCATATGATCTATATAGATTCTAATTAA TTTTAGAGTTTCTCATGGTTTTATATAGTTATATAAGCTGAAAAATAATTTGGTTTTGTGTAGAAGGGTAAGAGAGATGG TGTGATTCCAAGGCCATTTTTGGACATTGTTGGTTTTGCTGAAAAGGAACATGAGCCTTCTCAGAAGATTGCTGGCACAA GTGGAGATATTGTTCAGTTGGACACAAATGAAATCAAGAAATTGAGTTCTGCAAGGGATGTTGATCAAACATCCGAAACC GTGTCAATGATCAAGAAAGCTCGCGTATCTGTTCGAGCAAGATCAGAATCATCAATGGTTAGTGTAAAATGAACTACAAG TTTAATTTGCAATTAAGTAAATAAAATTCTGCATGATATTTGCATATATAACAAACTTTGTATGACAGATTCCAGATGGA TGTCAATGGAGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCTTGTCCTCGAGCTTATTATCGTTGCACAATGGGGAC TGCTTGTCCAGTTCGTAAACAAGTATACTTTCTACACCTTTTATGAAAAATTGCTTTCTTGGATAATGGATAGTGATTAA TCAGGTGAGAATAATTAATAGCTTGTCTAAAGCAATATATAGATTGCATATTACTTTTTAACTTTTAGGTGCATGTAGTT AATTATCAACCATTAATTATCTCAAAAGTTTAAGTTGTTAGGTAAATTATCATATGTCTAATAGTAGGAAGGAAGTTCTT CTTGTAACTTCTAAACAAGAGAATTGATTTTGAGTGACTAACTAATTAACAACTTATCCAAACATGTACTTAATAATTTT AGGAAGGAAGAGGAGTGCTGACAACACTATTTTTTCAACAATATTCTCTCATTGATCTTTGAAATTTATGTGAATTCTAA ATTGAAAGTGAGACTCGCTTTTTTAGTGGATCCCACATGTATTTCAACATACAATGAAAGAGAGTTAGAAATGACGTGTT AAAGTAAGTGTTGCTAACATTTATAGGAGAAAATGTTATCGATACATACCCATAATAGGATAAAGTTTGGAGACTTTCAT CCCGTTTGAATGTGGACCAAAGAACATTTATTCATACTGCAAATGTTATTCTCAAATGACATAATGAATTAAAATATGGA AGTTCTTTCCACGAAGGTGACATTTCGATCTAAATCAGAATTAAGGAGTTGCTTTCGTCCGAACCCAATTAATCATGAAT AATGCTAATTTTTAATCATAAGACCATGTGTTTACAACTAACGTTCAGTACATATTATTTATGATATGCTTCTTTATGTA CTAAACCTAATTTGCAAAAAAAGTTCTTTTAAGTATGAGTTGTCCCCGTTGGTTTTGAAGAGGAAGCGATCCAGAGCTTA ACTGACCATCTCGTTGCTAATCATTCAAGACTTTATGGAGATCCTTAGCGGAGCTTTCGGGTGTTGGTCTTTTTGGTTCT TTAGTGGTCTTTTCTAGGTTTATTTTGGTTGTTCTGAGCTACTTTTCAGGGACTCTTTTGGTTGTTCTGAGGGGTTTTGT GTTGGTGTTTTTCTGTTTCTCTGGATAGTCCTTTTTAAGCTTTGAGGTTGTTTATTCTCTGATTAGACCAATTTCTTGAT CCCTTTAAGGAGGGTTGTGTATCCTGCATATTTCATCATCTTATATTAAATATATTTCTTCTTTCTAAAATAAAAACTTG TAAATTAACCATATTTTTCTTAGTCTGTGGTAGATAAAGCCACAGAGATATACATTATTCATATAGTTCTTAGAAAAGAA TTTTTTTGCCACTTGACTCTAAGGTCAATGACAAATTAAGAATGAGTTTCATCCCTAACATGAAGTTGCACTAACTTCTT GACTTCATTCATGTTTCTTTATAGGTACAAAGGTGTGCTGAAGATCGAAGTGTGTTAGTCACAACATATGAAGGGCAACA TAACCATCAACTCCCTCCCACTGCCAAGGCAATGGCATCAACCACATCTGCAGCTGCATCAATGCTTCTTTCAGGAGCAA TGCCAAGTGCAGATGGCATAATAAACCCAACCATACTAGAAAGTGCATCACTTTCTTGCTCACAAAACGTGGCAACCCTC TCTGCTTCAGCTCCATTTCCTACTATCACATTGGATCTCACTCAAAGTTCTACCAGCTCCTCACAGCTACAAGGGTCACT ACAGAGCCAACTCAATCTCCTTCCCCCACTTTTGGCTCAGAAGTTTATGTCAGCTCCAAACACTTTTGGACATAAACTTC ATCATTTGCAGGGAATAGAGACATCTTCATCATTGGCAGACACGGTTAATGCAGCTGCTGTTGCTATCACTGCAGACCCA AAATTCACAGCAACTCTTGTGGCTGCCATAACATCCATCATTGGCAATTCGCATTCAAATAATTGTGGTACAAGTAGGGA TCCAGCCGTGCAATAATACATAAGACTAATTTTAATTATTAGTGTCACTTGCATTGGAATGAGTAAATGATCATTTTCCT AGGGTAGTTATTGAAAATTTCCAACATTGCTATGCATTAGATGGATCATATATTGATCCATTTTATTATTTGAACTATGA ATAAACATCTGCAATTTAGAAATTGAGCAAAAGAATTTTCAAATAGTACGTTCTTGAGAATATAGTGTACTTGAAATAAC AAAGCAAGTATGAAAAGGAGGAGTCTGAATTGCAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0155700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCAAGTCACCTCCAATGTTGATGATGCAGTTGCACATTCTTCTCAAGTCATGTCGTTTAATGGTAAACGACTAAT CATGGATGAGATGGATTTCTTTGCAGAAAAGAAGTCAAGTCCAGTTATTAGTGATCAAATGGTGCACCAAATGGAGCTTC ATGTTGATACTAGTTTAGATCTCCTCACAAAGATTTCCCCAAGCAACAGACTAACTGTGGAAGATGAGGCATTGGAGGCC AAGGATGATAAGAGAAATGAGTATGAAGCATTGCTAGCTGAATTGCACCACTTGAATGCTGAAAATCAACGCTTGAGAGA GCTGGTTGATCAGGTCAACAATGACTACAGTGCCCTATACAAGCATATTATGAAGCTGATGCAGAAACAGCAGACAAATG ATGAGAAGGGTAAGAGAGATGGTGTGATTCCAAGGCCATTTTTGGACATTGTTGGTTTTGCTGAAAAGGAACATGAGCCT TCTCAGAAGATTGCTGGCACAAGTGGAGATATTGTTCAGTTGGACACAAATGAAATCAAGAAATTGAGTTCTGCAAGGGA TGTTGATCAAACATCCGAAACCGTGTCAATGATCAAGAAAGCTCGCGTATCTGTTCGAGCAAGATCAGAATCATCAATGA TTCCAGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCTTGTCCTCGAGCTTATTATCGTTGC ACAATGGGGACTGCTTGTCCAGTTCGTAAACAAGTACAAAGGTGTGCTGAAGATCGAAGTGTGTTAGTCACAACATATGA AGGGCAACATAACCATCAACTCCCTCCCACTGCCAAGGCAATGGCATCAACCACATCTGCAGCTGCATCAATGCTTCTTT CAGGAGCAATGCCAAGTGCAGATGGCATAATAAACCCAACCATACTAGAAAGTGCATCACTTTCTTGCTCACAAAACGTG GCAACCCTCTCTGCTTCAGCTCCATTTCCTACTATCACATTGGATCTCACTCAAAGTTCTACCAGCTCCTCACAGCTACA AGGGTCACTACAGAGCCAACTCAATCTCCTTCCCCCACTTTTGGCTCAGAAGTTTATGTCAGCTCCAAACACTTTTGGAC ATAAACTTCATCATTTGCAGGGAATAGAGACATCTTCATCATTGGCAGACACGGTTAATGCAGCTGCTGTTGCTATCACT GCAGACCCAAAATTCACAGCAACTCTTGTGGCTGCCATAACATCCATCATTGGCAATTCGCATTCAAATAATTGTGGTAC AAGTAGGGATCCAGCCGTGCAATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0155700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDQVTSNVDDAVAHSSQVMSFNGKRLIMDEMDFFAEKKSSPVISDQMVHQMELHVDTSLDLLTKISPSNRLTVEDEALEA KDDKRNEYEALLAELHHLNAENQRLRELVDQVNNDYSALYKHIMKLMQKQQTNDEKGKRDGVIPRPFLDIVGFAEKEHEP SQKIAGTSGDIVQLDTNEIKKLSSARDVDQTSETVSMIKKARVSVRARSESSMIPDGCQWRKYGQKMAKGNPCPRAYYRC TMGTACPVRKQVQRCAEDRSVLVTTYEGQHNHQLPPTAKAMASTTSAAASMLLSGAMPSADGIINPTILESASLSCSQNV ATLSASAPFPTITLDLTQSSTSSSQLQGSLQSQLNLLPPLLAQKFMSAPNTFGHKLHHLQGIETSSSLADTVNAAAVAIT ADPKFTATLVAAITSIIGNSHSNNCGTSRDPAVQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31429:SF51
7 427 421 1.9E-147 –
PANTHER
PTHR31429
7 427 421 1.9E-147 –
Coils
Coil
74 115 42 - –
Gene3D
G3DSA:2.20.25.80
199 276 78 9.1E-32
IPR036576
SUPERFAMILY
SSF118290
207 275 69 3.79E-27
IPR036576
ProSiteProfiles
PS50811
209 275 67 28.415
IPR003657
SMART
SM00774
214 274 61 8.1E-35
IPR003657
Pfam
PF03106
216 273 58 1.5E-23
IPR003657

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0155700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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