Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0156100.2

Overview

Field Value
Gene ID LotjaGi6g1v0156100
Transcript ID LotjaGi6g1v0156100.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Cell differentiation protein rcd1, putative; TAIR: AT3G20800.1 Cell differentiation, Rcd1-like protein; Swiss-Prot: sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog; TrEMBL-Plants: tr|A0A1J7HKT7|A0A1J7HKT7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0156100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:43568635..43573549) extracted from Lotus japonicus Gifu genome v1.2.

GCTGATATGCTCAGTGACATGGCCAATTTGTCACAAGCATTCGGTGGCGGTGCCGGTGCTCCACCACCGCCACCTCCTCC TCCTCACGGTGGTCCCTCCTCATCCAACAAGATGGCCGGTGCGGAGCAGCTTGTCCTTGAACTCAGCAACCCTGATCTCC GTGAAAATGCTCTTCTCGAACTCTCCAAGGTTAATCTAATCCTTTCCACTTTTCTCATAATCCGAGAATTGAATTTCACT GGAAAATTGGATTCACATTGAAGTTGAAATTGAAAATCCCCATTTGTTTCGTTTTTGATAATTGGGTGTTTAGGGTTTTA TTCAATTCATTCATGTTGGTAATCGATATCGATAGCTTGTGTTGGGTGGTACGAGGTTTATTGCAGTGTCTGGTGTTTTA GATAGCTGTTTTTTTTACCCCTGTTGTATTTGAAGTTCTGTTTCCATTGTTGGGTTTGCCACTGTACTTAAATTCTTTAT TGTTGCAATTATATCATGATTTGGCTTGGTTTCTCTTGCAACTGTTTGGTATTACTATTATTACTGCAGTCATAATGGTA CCTCATTTAATATTTGTCCTCATGTTTTTGGTTTTGTAGAAAAGGGAGCTGTTTCAAGATCTTGCTCCATTGTTATGGAA TTCTTTTGGGACTATTGCTGCACTTTTGCAGGTATGCTATTTGGTTTGCTTTACATATCCCTTATGTGTAGTGCTTATAA AAAAAACTTGACTTGATCTTTCTTATGAATTTACTTTCTTAGCTTGTAAATTTTTTGGAGCTCAATGCACTTCCCTTTAG TCCTTATGCTTTGATTACCTATTACTCTGTTTTTTATCTGTTATATCTTTTGCTCAGATGTTGTTTTACTTGCTTCCAAG ATCCAACTTTTTCCTTGATTGAACTAACTTCTGATTTTCATAATTTGTCAAAACTGATTGATGATAGATTGAATTAAATG GTGATGGTGTGATTTAATTTATAACTTGTTTATATTTATCAGCATACTCCACGCACTGCATTTTGTTGAGTTTCTTGTCA TTTAATTTAATTTTGTATTTTATATCCTCAACATACTCTGTGAATTGCACATTCAGTTTCTCCTTTTTGAGTTTGTATTT TATATTCTGTATGAATTGATGTCCTTGAAAAAACTTAATTTCATTTCGACCTTTATGCATTGGATTTCCTTAGCTTGTTT TTTCGATGACATGATTCCTCTCAGTTGTCTTCCACTTACTCGGGTTTGATATTTTATTCTCTCAGGAAATAGTTTCTATA TACCCTGTCCTTTCACCACCCACTCTTACTCCAGCGCAATCAAATCGGGTGTGCAATGCTCTTGCTCTTCTTCAGGTTAG ATGAGTGTGTGCTATTAAGTTGTGTTCAACATTTTAAGGTTACATACATTTTAACTTCATTTTAAGGTTGTATCATATTT TAAATCACCAACACTATGCAATTTGGGCTTTGATATTGTTTTTTAACAAATATTTATATAAAAATGTTGAGGACGTATAA CCCACAGAAAAGGCAGACACTATTGTGCAGTCTTTTTATGGTTTCTTATTCTGAAAATTAAGCCATAAATATTATACTTT TGTTTCCTTTTCTTCTTTTGAGACATGTCACAAAGAAAATGTTTTCAGATTATGCTTCTAACTGTTCTCCTCATGATTTT CTTGCAGTGTGTGGCGTCTCACCCTGATACAAGGATGCAATTCCTCAATGGTAATGTCACTTTCCTCATTCATATGAAGG ACTTTGAACTTTCATCTGATTTTGTACTTATCACCTTTGCACTATATGTTTTGATTGTGGTTGGACTAAACTGTTCAAAA TAAGCTTTTTATATTTGCTCAAGTTGTGTGGCAAATGCTATCAGCTTCTTTAGATTTTGTTGATGCTATGCAGGTAATAA AATGAATTGAAAAAATTACTCTCCTAATAACATAATGAACTAATATTTACGATTATTTACCCTAACTAACTATATATCCT AATAACATCCAGAATTGATATAATATCTATTTAATAACGTAAAATATATCTTAATAATTAATACTCCTAATAATAGAATG GATAGCTTTAATGCCCTTACTTTTTCCTTGTATAAACCAGTGTTATCAAATGACGGCCATAGCGGTATGGCGTGACAGAT CAACGGCGAACTGCCATGAAAAGTGCATGGCGTGGCGGATTGTTCATGGCGGGCTCATATGGCCTGGCTCATGCCTGTTC AAAACATGACCCAAACAACTGTAAAACCCTAATTTTTTGAAGAGGCAGCCCCTGTTCTCTTTTTTCTTTCTCATTTGAAA CCTGCCTCTGTTCTGTCCAGCCATACTCCCTCCCCATCAAGCTCTCATCCTCATCCGATCCGGTGGCACTTGACGGACTC TGGGCAACACCCCTCCGTAAGGCCTCTGCTTTTTTTGTTTTTTCCTCCCTTGACCCTTTCTCCTTTTTGTCCATGAGTTC ACCCATAAGATAAGCTATTAGAGTATTATATGTATCGTATATTTAGTGGTTAAATGGTTGTTTTGTAGTTCTTTTTGCAA AGTATGATTTATTTATTTATTCTTGGAACTGATCAGTTAGTTTTAGCCTCTTAGCCTTTCTTATATTGATAGCTAAGCAT TAGTAACTGATTGATTACCACTCATTGCATGAAGGCTTCTCTTCAAAATCTTATTGTAATCAGAATTCATTCTGCACAAA TCTGAGTTTCTCCAAATCAAATCTCTCTCTCTCTTTCTATCATTCTAGTTTCCAAACACAAGGCAAGTTGATGAGCTCAG TCATAGACTGCATATGTACTCAGGATTTAAGGACTGCTGAAGTTCTTCCATCCAATAAATAGCATCTAGGAGTAAAAGTG AACATTATAAATGCTGCTTGTACATACTTGTTATTGTCTTTTCCATCTTAGGAGTTTTCCTATGTTGCTTGAATATGGAG TTTCATTCTCCTATTTTGAGGTCACCATATCTGATTCTCTTTTTTAGTAGTCATACCCTTGTTGCTGTTAGATTTTTTAC TTCCAAGATCTATACAGTATACAGTACACTAGTAAGCCTCTTAAGCAAGAAGCATTTGGATTGTATATTAATTTTTTTAT GTTGAATCCTTGGAGATTGCTTTGACATTACAAAATCCTTTGTGTTTTTTTTTTCTTTTTCATGTTAATGTATATAGTCC ATTTAGTGTTTCATATTTGGATAACTTTTTTTGATCGGCCATGATATTTGGATAATGAACCGTTGCACTTGTTTTTCTCC TCTGCAGCTCATATCCCTCTGTATCTGTATCCTTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACCTGAGGCT CACCAGTCTTGGTGTCATTGGTGCATTGGTGAAGGTACGTATTCCTTGCTGATTCTGCTGTTGGATGCAAATAACTACTA GAAAAAAAACTCTGAAGGCGATATTGATGTTGCAAAAATGTTTTTAATCACTATTATTGCAAAAGCAAAACTGTCAAAAA GATTTGCCAAAAATCCTTGACCGTTGACACAAAAATCTTTATGTGATGGAGTGAAAATCCAACTTGTTTGGATGATTTCA TCACTCATCACTATTGTTAAGGAACAAGTTAAAGTCTCCAACTATTAGTTACATGTTTTTTTGGGTTCTATTTTTGTCAT TCATGTATTACCAACTAGTGGTTTGTCAATTGTAACAATTTTCTGGCAATATTTTATTGACCAGGTTGATGATACGGAGG TCATAAGTTTTCTTCTTTCAACTGAGATAATTCCTCTTTGCCTGCGCACCATGGAAATGGGCAGTGAACTGTCAAAAACA GTGAGTTCATTGATTTTTGATTTTTATTCTTGGGTCATCTTATGCAAACACAATATTTTCTTCATATTTCTGAGTCACAT TTTTCTGTTGTTTGTTTAATTGTGCTAGGCTTACGTATGATTTATCTGTATATGCATGCATTACTTGATTAATGCGTTAT GCGATAGCGAAAGATAAGTTGACATTTGAACCTTTACTTGAGGAGTCTGCTTTTGTGATTCTTGTTTTTTACCTTTTGAG TAGTTGATAACATCAGCTTTTAGATGTGGTCATGGAACTGTTTGAGCTTTTCCTGGCATATTTTTATTGATATGTAATTT GAGCACAGATATCTATACAGTGTGGGTTAAAAATTCAAATCCAGTTCGTGATTTTCTAGTTAAATCATTAACTCACTTGA TTGTCTTATATCGCCACTCTCATGAATCCTCCTGTGTGTATATCAAATAAACGTTAAACTGAGCATGGTTCCTCTAATGG AAGTTCTACCGGAACAGGTTGCAACATTTATTGTTCAAAAGATTCTGTTGGATGATGTGGGCTTGGATTATATTTGCACT ACAGCAGAGCGTTTTTTCGCAGTAGGTCGAGTTTTAGGGAACATGGTGGGAGCTCTTGCTGAGCAGCAATCAACTCGTCT GCTGAAACATATCATTCGATGCTATCTTCGCCTTTCTGATAATCCAAGGTTGGTGAATAGTGTGTAACTCCATGCTAGTG CTTTCTCCTTCCATGCCCTAGTCCTTTTTCTTTTCAAGTTTCAAATATCATCTCTGATATGACTTTGATTTGGTTAAAAC AGGGCTTGTGATGCATTAAGAAGCTGTCTTCCAGACATGTTAAGGGATGCTACTTTCAGCAGTTGCCTTCGTGTAAGTAC TTGTGATATTAATTTGTAATCAATGGAGTGGAGTGGCAAGAGGGTGAGCCTCGGCGCAACGGTAAAGTTGCTGCCATGTG ACTTTGTGGTCACAGGTCCAAACTGTGGAATCAGCCTCTTGCAGTAATGGTAGGTAAGACTGGTTACATTAGATCCACAA AGTGGGTCTGGGCCCTCCCTAGAACTTGCTCATAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0156100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTCAGTGACATGGCCAATTTGTCACAAGCATTCGGTGGCGGTGCCGGTGCTCCACCACCGCCACCTCCTCCTCCTCA CGGTGGTCCCTCCTCATCCAACAAGATGGCCGGTGCGGAGCAGCTTGTCCTTGAACTCAGCAACCCTGATCTCCGTGAAA ATGCTCTTCTCGAACTCTCCAAGAAAAGGGAGCTGTTTCAAGATCTTGCTCCATTGTTATGGAATTCTTTTGGGACTATT GCTGCACTTTTGCAGGAAATAGTTTCTATATACCCTGTCCTTTCACCACCCACTCTTACTCCAGCGCAATCAAATCGGGT GTGCAATGCTCTTGCTCTTCTTCAGTGTGTGGCGTCTCACCCTGATACAAGGATGCAATTCCTCAATGCTCATATCCCTC TGTATCTGTATCCTTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACCTGAGGCTCACCAGTCTTGGTGTCATT GGTGCATTGGTGAAGGTTGATGATACGGAGGTCATAAGTTTTCTTCTTTCAACTGAGATAATTCCTCTTTGCCTGCGCAC CATGGAAATGGGCAGTGAACTGTCAAAAACAGTTGCAACATTTATTGTTCAAAAGATTCTGTTGGATGATGTGGGCTTGG ATTATATTTGCACTACAGCAGAGCGTTTTTTCGCAGTAGGTCGAGTTTTAGGGAACATGGTGGGAGCTCTTGCTGAGCAG CAATCAACTCGTCTGCTGAAACATATCATTCGATGCTATCTTCGCCTTTCTGATAATCCAAGGGCTTGTGATGCATTAAG AAGCTGTCTTCCAGACATGTTAAGGGATGCTACTTTCAGCAGTTGCCTTCGTTTTGTGGTCACAGGTCCAAACTGTGGAA TCAGCCTCTTGCAGTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0156100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSDMANLSQAFGGGAGAPPPPPPPPHGGPSSSNKMAGAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTI AALLQEIVSIYPVLSPPTLTPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI GALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVGALAEQ QSTRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLRFVVTGPNCGISLLQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 35 35 - –
MobiDBLite
mobidb-lite
16 30 15 - –
PANTHER
PTHR12262
28 283 256 1.9E-152 –
PANTHER
PTHR12262:SF10
28 283 256 1.9E-152 –
Gene3D
G3DSA:1.25.10.10
31 297 267 4.6E-131
IPR011989
Pfam
PF04078
42 284 243 2.0E-123 –
SUPERFAMILY
SSF48371
44 268 225 2.35E-7
IPR016024

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0156100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…