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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0157700 |
| Transcript ID | LotjaGi6g1v0157700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb domain protein; TAIR: AT3G27340.1 Myb domain protein; Swiss-Prot: sp|A1W6E1|SYC_ACISJ Cysteine--tRNA ligase; TrEMBL-Plants: tr|I3TA82|I3TA82_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0157700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43873583..43876525) extracted from Lotus japonicus Gifu genome v1.2.
AATAAAAGTAAAAAAGTTTATAGCTAAGCCTTAAGTCAAATGCATTGCAAAACACTGTTAGTTTTTGCAAGATTTTGGGT GATTAAAGAATTGAATAGAGGAAAGATAATCCTCAGAAAAGGGCATCAAAGCTGGTAGGTAGCGTGAAAGATCGGCAATT TCCGGAACATCTGTGTGCTAAACTGGTAATCTATCTTCGTCTCTTGGGAATCTACTCATGTTTCCCCATGTCATTATGAT TATGGTATATATGTATCTTGTTCCTTTTGGCAGTTCCATAATTTTACTGGGTGCTTTTCGGTAGTTTGATGAGTGGAACT GTTAAGACATATCAATTTGGATTGCCTTTCTCTTGTTTGATAAAATGCCTCACTTAATGTTTCATAGGAACTGAGTCTTA GTTTTAAGAAGTTGGTTCTAATGTAAAGACCCAACTTATATTTTCTTCTTATGCTGAGCTGTTTGGTAACTGATATGTGA GTTGCCATGGCATGTCTTTATGCTTGTTCTTAGTATCTATGATATTGACTAGGAGGGCTAGCAATTGCACTATGGCCTTG ACTGATGTGAGTTATGTTTTATGTGCTGATTTGATCTGGGTCTCATGCTTAGGAATGCTGGTTTCAATGGTCCTTTTGTG CAATACTACAATATGGTGCTTCTAAACCGTGAAGCATATACCTTGAGTAGGAGGTCTTGTGACAAATCCCCTAAATCTGT TTTTTTTTTTTTGATTGACCTTTAGGGGCAAGAGAATTTGTTATCTTGTACATCCCTTTTGTGCCTATCTTGTATGTTAA ACTCATAATGTGTGCCTTAGATCCTAGTTGTTTTCATTATCAATGAATCGGGCCTTCATTATATTTTCATTCATTCCGTT GTTGTACACCTTGACTGCCATATATGATGTCCGTTGGTTTTATTCAGTCCTAATGTGTTCCCAGATGTTTAGAAGTAATG TGAAATCTGTTCTGTACTTGTTTATAAGAGGAATAATATAGGAGGTCTTTCACAAGGAAATTAGTGGTTTAGTGTTTTGG GGTAGGATTGATTTGCTGACTTAACCATATCGTTATGTTCCCACTAATCATTTTGGAAACTGGCAACCAGATTTGCTTAG TTCCAATACATCAAATTCAGAGTTTCTGGTTAGTAGTAACTTCTGGCTTACAGCCTTTACTATTTTCTGCATCATCAAAT GAAAGAAGTGCTGGTTCTTCTTGCCAGTTTGTTGTTCATTACAAGAAGTCTTCTTTACTTTACTCTTGTTGTGTGTTTAT GATTGTCACTGGTGTCCACCACTTGTTGAGTTTTTTTGTCGGTGATTGGCATTCAAATGTATGGTCCCATTACTTTGGCT AACCCCTGGGTAAGGGAGAGTTTTTTCTTCAATACAGAAACTAAATTTTTTGGTGGGTTTGTGGTAATTTTATTTTTCTT TCTTGAACCAAACATAAAAGTCAGGTAGGTTGTTATTTGTGATCCTACTGCAAGAATATCCAAAACAATATATCAGTTTC ATCCTCTGATATTAATAATTCTAACAAGCAGACAAAATAAACTCTCTTTGCAGAACCACCAAAGCTCTATCGCTGGCCTC CTAGACAAGAAATACAATAGCTATGCTGACAGCGATTCGGAGAATCAACACGGTGGCAGAAGAAACTGTGCGCCTCACCA GATTTGCTCTTCATGCCCCAAAATGCGTGAGTTTCTCATTTTTTATTCCCCTTAATCTTTTATTTTTCAAAAAAAAATCC TTAATTTTTATAGATTTAACAAAAAGCTATAATACATGTTTAGGTTGCAATAGATGAGGATGCCTTTTGAGCATGCCTTA GTTGATGAAAAAATCAGATCAATTATTGCTTTTACACATAAGTTGTCAATTAAGGCCCACTAAAAACTCAAACCTGTATA TTCCAACCTTTATTTAGGTTGAAATTTAATTGGATTTTCATTGAAAATTAGAATTGATGAAACTACCATCTCATCTACAT AAGGGATCATGGTTTCCTCCTTAAACCTTTTGTTTCAGGTAGAGGTGGAATTTGCGGATGGTAGAGCATTCAAGTTGTCT GCTGAATTTCTCAGAATAAATAGCCCTGCAGTTGATGGAAAAATCAGGTCAATTGGTGGTGAAAAGGTAACTCTACCACT TGAAAATTATATGCAGAGTTTTCATTAACAATCCTCTATTTAGTTTTTCATAAAATCATACTTTATAATCTCTTATTTTC TAAATTTTGATTAAAATTCAATTAATTCCTTTCTCATGATACTTCCTTTATTAAATGTAGGTGATATCTGGGAGACGCCT TGTCGGAATTATGTCTGCTGAACCAGTCGGAAACTATGGGGTAAGGTACTACAAGCTCAGACATTAAGAAAATTTCAGTA TCAACATCTAATTCTCTTTCTACACTGAAACCTAATGTATTATTTTTGAATTGGGTGGTGCAGGCTCAATTTTGATGACT TGCATAAAACCGGTATTTATTCCTGGGATTATTTCTATCATCTAGGAAGCAACAGGTTTACCCTGATGAGAAACTACATC AAAACACTGAAGAAATACGGGCTTAGTCGGGATCCACGAGGAAGAAAATGATGCAGGCTTCAGTTTAATTACCCAGAACT AGTTTGAGTCTTGAGATGTGATTACCCAGAACAACATGATCCTCTGGTAGCTTCATTTGTTGAAGCTGAAATCTGTAATA TTGAAAATTTTATGTTGAATGGAATTTGAAATATGGGCATCAATCGAAAAGTCTCCATTTAGAAGAGATAGGGAAAATAA AATAAAGGATCCCTTTGCATCATATTCCCTTTCTTTTTTGGCCAAGGATGAGGAAACTGACATGTACCTTTGAAATATGT TTCAAAGTTAAAATCATATATACCTTTGAAATATAACCAGTGACGGATCCAGGAATTTTGTGT
CDS sequence (LotjaGi6g1v0157700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGACAGCGATTCGGAGAATCAACACGGTGGCAGAAGAAACTGTGCGCCTCACCAGATTTGCTCTTCATGCCCCAAA ATGCGTAGAGGTGGAATTTGCGGATGGTAGAGCATTCAAGTTGTCTGCTGAATTTCTCAGAATAAATAGCCCTGCAGTTG ATGGAAAAATCAGGTCAATTGGTGGTGAAAAGGTGATATCTGGGAGACGCCTTGTCGGAATTATGTCTGCTGAACCAGTC GGAAACTATGGGGTAAGGCTCAATTTTGATGACTTGCATAAAACCGGTATTTATTCCTGGGATTATTTCTATCATCTAGG AAGCAACAGGTTTACCCTGATGAGAAACTACATCAAAACACTGAAGAAATACGGGCTTAGTCGGGATCCACGAGGAAGAA AATGA
Protein sequence (LotjaGi6g1v0157700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTAIRRINTVAEETVRLTRFALHAPKCVEVEFADGRAFKLSAEFLRINSPAVDGKIRSIGGEKVISGRRLVGIMSAEPV GNYGVRLNFDDLHKTGIYSWDYFYHLGSNRFTLMRNYIKTLKKYGLSRDPRGRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 11 | 109 | 99 | 1.2E-19 | ||
| PANTHER | 12 | 134 | 123 | 4.0E-57 | – | |
| PANTHER | 12 | 134 | 123 | 4.0E-57 | – | |
| Pfam | 27 | 104 | 78 | 2.6E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0157700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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