Transcript — View — Lotus Base

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LotjaGi6g1v0158700.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0158700
Transcript ID	LotjaGi6g1v0158700.1
Lotus japonicus genome version	Gifu v1.2
Description	Senescence regulator; TAIR: AT4G21970.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp\|Q5FR06\|QUEA_GLUOX S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TrEMBL-Plants: tr\|A0A0B2P0N7\|A0A0B2P0N7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0158700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:43969713..43971486) extracted from Lotus japonicus Gifu genome v1.2.

GTTAACCTCACCAGGACATCGATGTCTTCAACTCTGAACATTATTGCCTTATGTGGATGATGTTTTTCCGTGCACTGAAA AAAAAAAGATGAGGTCAGTAATTGAGATTTACTGCTCCCTCTACCTTTCCTAGTCAAATTTAGTCTTTGGTAAGAAGAGT TAAATACATGGAGGTCCATCATTTAGAGGATCTCTAAGGGCAGAAGTCAGGTCTGTCTTATTCTTGCTGCTATTGTTTCA GCTCCTGTGGGTTTCCTGCTCCATAATAAAATCTATCACAAGTTAAGACTCCTTCAAACACACAGAGGTAAAGAAAGCTT CTGAACTCAGGATATAGTAATATTATTGTCAACCTCATATTCTGTTATCAGAATCCAATGTGACTCATCTCTTATTTCAG CTTTATTTTACATATTGCAGGAAAAAAACTGTTCAGGATCAACATAAAGTTCTCTCTTTTGAGCTTCTGATTCCAGGAAA GGTATATTATTGTTTTCCTTATTGAAATATCAAATACCCCTTTTCAGAATCTGCTATTGGGACCTCTCTGTAGGCATCTA TGAATCTTTCTAGTCTCAAATTTTTTGTTCCTCCTTCTTCTCTTCTTTGTAATTCATCAAAATTCTGATTCAATCGAAAT TGAAAATTTTCTTATGGTTTGGGCTATGTAGGAAGTGATCAATGGAGGATAAATATAGTCTATTTAGGCAAAGAAGTGAG ATATGGAGATCCTTGAGAGATGGAGACTTTGAAGAAGAAGAAGTATGGGATGTTTACAAAGACAGAGCTGATATTTATGT TTCTGAAGTTCACAAGACCAGGGACAAGGTTCAATCCTCTCCTCTTGCTATCCCTAGGTCCCTGCCAGCTGCAGCAAGAA TGATCCCAAGAACTAGCAGTGGAAATAGCAGTGCTAGTTCCTCCCATGAAGCAAAGGTTCTTCAGCAATCAGTACCTCTC AACATTCCTGATTGGTCTAAGATTTACAGGAATCAGCAAAAGAAGAACCCCAAGAATGTTTCAAGGTTTGATGATTATGA TTACTGCCATTCTGTTGCTGATGAAGATGATGGTGATGGTGTTGTCAATTATGGAGGAGAAAGTGATAATGATGATGATG ATGAAGAAGGAGAAGATGATGAGTATGATGCAAAGCTCCCACCCCATGAATTTATTGCAAGAAGGCTTGCCAGGAGCCAG ATATCCTCATTCTCAGTCTTTGAAGGTGTTGGGAGGACACTCAAAGGTAGGGATCTTAGCAAAATGAGGAATGCTGTCCT CACAAAAACTGGATTCCTTGAATCACTCTGAGAAGGGGTTTCCATGAATCAAATTTGTGTTGTATAGGGGGTTATGTTAA AAGGGCGAGTCTAGTCTTGGAGCAACGATAAAGTTGATGCTGTGGTTACAAGTTCAAGTCGTGGAATCAATTTCTTGTAG AAATGCAAGGTAAGGCTCCATACATTAGATCCACAAAGTGGGTCCGGTTCCTCCCTGGACCTCGCACATAGAGGAGTTTT ATTAAACTAAGTTCACCCTTTTATAGGGGTTTATGCTGTTAGTGATAGGTTAGCTATTGAGATTGTGTGCATGGTTGTGT TTATTAGGGGTAAGAAAAATTGATTCTATTTGGCATTTACCATGAAAAGGCTATGAATCGATTTGTTTGTTCAATCTCCT ACTATGAGAAATTTGTGCTAATTAAAGGCAAATAACAGTGATGGATGTGCCAGGTTAAGTATTGAAATTGAATCATAAAA CCATTATTCATTCA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0158700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGATAAATATAGTCTATTTAGGCAAAGAAGTGAGATATGGAGATCCTTGAGAGATGGAGACTTTGAAGAAGAAGA AGTATGGGATGTTTACAAAGACAGAGCTGATATTTATGTTTCTGAAGTTCACAAGACCAGGGACAAGGTTCAATCCTCTC CTCTTGCTATCCCTAGGTCCCTGCCAGCTGCAGCAAGAATGATCCCAAGAACTAGCAGTGGAAATAGCAGTGCTAGTTCC TCCCATGAAGCAAAGGTTCTTCAGCAATCAGTACCTCTCAACATTCCTGATTGGTCTAAGATTTACAGGAATCAGCAAAA GAAGAACCCCAAGAATGTTTCAAGGTTTGATGATTATGATTACTGCCATTCTGTTGCTGATGAAGATGATGGTGATGGTG TTGTCAATTATGGAGGAGAAAGTGATAATGATGATGATGATGAAGAAGGAGAAGATGATGAGTATGATGCAAAGCTCCCA CCCCATGAATTTATTGCAAGAAGGCTTGCCAGGAGCCAGATATCCTCATTCTCAGTCTTTGAAGGTGTTGGGAGGACACT CAAAGGTAGGGATCTTAGCAAAATGAGGAATGCTGTCCTCACAAAAACTGGATTCCTTGAATCACTCTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0158700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEDKYSLFRQRSEIWRSLRDGDFEEEEVWDVYKDRADIYVSEVHKTRDKVQSSPLAIPRSLPAAARMIPRTSSGNSSASS SHEAKVLQQSVPLNIPDWSKIYRNQQKKNPKNVSRFDDYDYCHSVADEDDGDGVVNYGGESDNDDDDEEGEDDEYDAKLP PHEFIARRLARSQISSFSVFEGVGRTLKGRDLSKMRNAVLTKTGFLESL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33083:SF65 View details on PTHR33083:SF65 Search for proteins/transripts with this domain View external data on PTHR33083:SF65	1	207	207	5.0E-89	–
PANTHER	PTHR33083 View details on PTHR33083 Search for proteins/transripts with this domain View external data on PTHR33083	1	207	207	5.0E-89	–
Pfam	PF04520 View details on PF04520 Search for proteins/transripts with this domain View external data on PF04520	22	207	186	2.3E-35	IPR007608 Show description in modal box View details on IPR007608 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	49	86	38	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	69	86	18	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	126	157	32	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	133	154	22	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0158700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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