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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0165300 |
| Transcript ID | LotjaGi6g1v0165300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase 7 long form like; TAIR: AT1G32120.1 serine/threonine-protein phosphatase 7 long form-like protein; Swiss-Prot: sp|Q9LNG5|PPP7L_ARATH Serine/threonine-protein phosphatase 7 long form homolog; TrEMBL-Plants: tr|A0A151T1G0|A0A151T1G0_CAJCA Serine/threonine protein phosphatase 7 long form isogeny; Found in the gene: LotjaGi6g1v0165300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:44934129..44936509) extracted from Lotus japonicus Gifu genome v1.2.
TGGAGGTGAGGGAAGATTTCATGGTTTCACCAGCTGGTGATAGTGAACCAACTTTCAGAACTGCCCATTTTCTGAAACCT ATTGCTACCTCCATTGATGGAACAGTTTCTGAGATTTTCTCATCCTCTGTGCCACCCATGCTTGAAACTGAACCAAAGGA GTGCCATTTGAAAGTCCATTTCAATGCATGGCGCTCCTTGCGGAATAACTAGACTAGCTGGGTGGATGCCCTTTGTCTCA GGTATGAAGTTGTGTGGAAGAAAGTTGGCATCTTTGAAGCCATCATGAGCACCAAGTTCAAAATTGTGAAAAACCATGAC TTATTATTTGAGGTTGCAGAGAAGTGGTGTTCTCAGACAAACACCTTTGTGTTTCCATGGGGTGAGGCCACAATCACATT GGAGGATGTCATGGTTTTGGGGGGTTACCCTGTTCTTGGTGACCCTGTTTTCACCTCACTTCAGAATCAGGAAATGAGAG AGGTTGAACAAAAATTGATTCTTGCAAGAAAAGAACCTTGGAGGAGGAGAAAATCTAAGGCTTATGTATCAATATGGATA GATATTTTCATTAATAGTGGGAGTGAAATTGAGCATGAAGCATTCCTTGTTGCTTGGTTGTCATTGTTTGTTTTTCCTCA TCAAGACTATGTAAATCAGTCTGTATTTCCTATTGCTATTCTTCTTGCTAGAGGTAATCCTATTGCTTTGGCACCAGCAG TTTTGGCTAGCATATATAAGGATTTGGGCTTGTTGAAAGAAACAATAGCTGGTTTGACAAAAATTCCAGTAGCTGCTGAT AAATTGGACAAGGAGTTAGAGGTTACTCTTGAGTCACCCTTTTACTTGGTTCAAATTTGGTTGTGGGAAAGGTTCCAAAA TTTGCAGCCAGAGACCAATGTGATCAAAGATGGAGACCCTTTATTGTTCAGGTGGCACAAGGTTAAGGGCATGAAAATTG ACAATGCAAGGCTGGCACTGAACTCAGCTATGGGTGATTTTCTTTGGCGTCCATATGTTAGATATGGTGGTAAGTGCAGG GCATTTTATCCAGAAAATGAAATTCAGCAGGTACCATTTGAGGCAGATTTGGACAAAGAGCTAGCCTCATTCGTTAGGTG CATGAGAGTTTCTGAGCTTGTTGGAATTGACTCTACCATCCTGCAGTACTGCCCTCATCGAGTTGCTATGCAGTTCGGAA TGGATCAAGATGTCCTGGATTGTGTGCCGGTATTCAGAAGGACTGAAGGTATTGCTTGGGAAAATTACTGCAGGCCCATA TCTGATAGAAATTTGTATTTTCCATCAAGGCTTTTTGAGGCAGATGTTACCACACGTTATGCAAGGTGGTGGAAGCAATC AGTAATGCATCATCAAGATTTTGCTGTCAATATTGTGCATAGGAAAAGAAGCACAATGCCATCAACATGTGGACCTCATG TAGTAAAAGAAAACATAAGTTGTAATGTTGCTGATGTTCCACCTGTGTTTCCTCCCAAACTTATTAGCACTGTTGTTGTT GGAAAATCTTGTGATGATGGTTCAAAAACTGTGGAGGTTGATAATGATGCCGATGTTACTTCTGGTTTTCTTCCTAATCA TTTGCAAGTTGTCCCTTTTGGAAATTCTGTTCAAGATGGTTCCAAAGCTAATGGAAATACTGCTGTTGATGTTCCAACCA GTTTTCCCCCAAAACATGATGCACTGAGTCCTTGCATTTATGTGAAGAATCCTAAGCCTGTCTTGGAAGAGGACAAGTGT TGTGGCATGGCTCAAGGTTTGGCTAATGTAGAAGATAACACTGTAACTTCATTAGGGAGATTGAAGGAAGATTTTGAAGA TGCAAATGGGAATAAAGAACCAATGCTGTCTACTGATAGAGTAAGGCTATCTGGGATCCAAGGTGAAAGCTGTGTAAATG TTGTGGAACTTAAAAGGAGAATTCGCAGACTTGAGAGAGTGATTTCAAGATTAAAGAAAGCAAGGTTTGGAAACATTTGA AAATTTATTACCTGATTAGACTAAAACATTATCACTTGTTAACATTTGTTGTGTCCTTTTTTATGCTTTGGGAGAATGGA GAGAGGATAATAGAATGAGGAGTGAATTGAGATTTGAGAATGGATGGGGCAAGTTTCATTTTACATATTTCTATACTTGG TATGAAATTTTGGTGGTTTGTCTGAGTGCTCTTCTCTAATTTGAGTCCTACAGAATATGTATCTGCTTAAAGCTCTTCCT GATTCAGTTCAACTCTTGGCTCTCTTTAAGCATCTCTATTTCCTAGTTATTGAGTTAACTCTCATTCAATTAACCAACCT TAATCTTTTTCTTCTATATGTGTATTTCATTTCACGATTTCAATTCTATAATCTGCTGCTG
CDS sequence (LotjaGi6g1v0165300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACCAAGTTCAAAATTGTGAAAAACCATGACTTATTATTTGAGGTTGCAGAGAAGTGGTGTTCTCAGACAAACAC CTTTGTGTTTCCATGGGGTGAGGCCACAATCACATTGGAGGATGTCATGGTTTTGGGGGGTTACCCTGTTCTTGGTGACC CTGTTTTCACCTCACTTCAGAATCAGGAAATGAGAGAGGTTGAACAAAAATTGATTCTTGCAAGAAAAGAACCTTGGAGG AGGAGAAAATCTAAGGCTTATGTATCAATATGGATAGATATTTTCATTAATAGTGGGAGTGAAATTGAGCATGAAGCATT CCTTGTTGCTTGGTTGTCATTGTTTGTTTTTCCTCATCAAGACTATGTAAATCAGTCTGTATTTCCTATTGCTATTCTTC TTGCTAGAGGTAATCCTATTGCTTTGGCACCAGCAGTTTTGGCTAGCATATATAAGGATTTGGGCTTGTTGAAAGAAACA ATAGCTGGTTTGACAAAAATTCCAGTAGCTGCTGATAAATTGGACAAGGAGTTAGAGGTTACTCTTGAGTCACCCTTTTA CTTGGTTCAAATTTGGTTGTGGGAAAGGTTCCAAAATTTGCAGCCAGAGACCAATGTGATCAAAGATGGAGACCCTTTAT TGTTCAGGTGGCACAAGGTTAAGGGCATGAAAATTGACAATGCAAGGCTGGCACTGAACTCAGCTATGGGTGATTTTCTT TGGCGTCCATATGTTAGATATGGTGGTAAGTGCAGGGCATTTTATCCAGAAAATGAAATTCAGCAGGTACCATTTGAGGC AGATTTGGACAAAGAGCTAGCCTCATTCGTTAGGTGCATGAGAGTTTCTGAGCTTGTTGGAATTGACTCTACCATCCTGC AGTACTGCCCTCATCGAGTTGCTATGCAGTTCGGAATGGATCAAGATGTCCTGGATTGTGTGCCGGTATTCAGAAGGACT GAAGGTATTGCTTGGGAAAATTACTGCAGGCCCATATCTGATAGAAATTTGTATTTTCCATCAAGGCTTTTTGAGGCAGA TGTTACCACACGTTATGCAAGGTGGTGGAAGCAATCAGTAATGCATCATCAAGATTTTGCTGTCAATATTGTGCATAGGA AAAGAAGCACAATGCCATCAACATGTGGACCTCATGTAGTAAAAGAAAACATAAGTTGTAATGTTGCTGATGTTCCACCT GTGTTTCCTCCCAAACTTATTAGCACTGTTGTTGTTGGAAAATCTTGTGATGATGGTTCAAAAACTGTGGAGGTTGATAA TGATGCCGATGTTACTTCTGGTTTTCTTCCTAATCATTTGCAAGTTGTCCCTTTTGGAAATTCTGTTCAAGATGGTTCCA AAGCTAATGGAAATACTGCTGTTGATGTTCCAACCAGTTTTCCCCCAAAACATGATGCACTGAGTCCTTGCATTTATGTG AAGAATCCTAAGCCTGTCTTGGAAGAGGACAAGTGTTGTGGCATGGCTCAAGGTTTGGCTAATGTAGAAGATAACACTGT AACTTCATTAGGGAGATTGAAGGAAGATTTTGAAGATGCAAATGGGAATAAAGAACCAATGCTGTCTACTGATAGAGTAA GGCTATCTGGGATCCAAGGTGAAAGCTGTGTAAATGTTGTGGAACTTAAAAGGAGAATTCGCAGACTTGAGAGAGTGATT TCAAGATTAAAGAAAGCAAGGTTTGGAAACATTTGA
Protein sequence (LotjaGi6g1v0165300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTKFKIVKNHDLLFEVAEKWCSQTNTFVFPWGEATITLEDVMVLGGYPVLGDPVFTSLQNQEMREVEQKLILARKEPWR RRKSKAYVSIWIDIFINSGSEIEHEAFLVAWLSLFVFPHQDYVNQSVFPIAILLARGNPIALAPAVLASIYKDLGLLKET IAGLTKIPVAADKLDKELEVTLESPFYLVQIWLWERFQNLQPETNVIKDGDPLLFRWHKVKGMKIDNARLALNSAMGDFL WRPYVRYGGKCRAFYPENEIQQVPFEADLDKELASFVRCMRVSELVGIDSTILQYCPHRVAMQFGMDQDVLDCVPVFRRT EGIAWENYCRPISDRNLYFPSRLFEADVTTRYARWWKQSVMHHQDFAVNIVHRKRSTMPSTCGPHVVKENISCNVADVPP VFPPKLISTVVVGKSCDDGSKTVEVDNDADVTSGFLPNHLQVVPFGNSVQDGSKANGNTAVDVPTSFPPKHDALSPCIYV KNPKPVLEEDKCCGMAQGLANVEDNTVTSLGRLKEDFEDANGNKEPMLSTDRVRLSGIQGESCVNVVELKRRIRRLERVI SRLKKARFGNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 404 | 404 | 1.5E-150 | – | |
| PANTHER | 1 | 404 | 404 | 1.5E-150 | – | |
| Pfam | 1 | 357 | 357 | 3.7E-107 | ||
| Coils | 546 | 566 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0165300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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