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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0166800 |
| Transcript ID | LotjaGi6g1v0166800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein; TAIR: AT5G45500.1 RNI-like superfamily protein; Swiss-Prot: sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4; TrEMBL-Plants: tr|A0A0S3S7X5|A0A0S3S7X5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0166800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:45103843..45106073) extracted from Lotus japonicus Gifu genome v1.2.
CTCACAAAATCTTCCACCATTTCCCTCCATCCCACATTCTACAACCTGAAAAGAAAAATGTCTATTCGAACAAACTCCAT GAAAGCAGTGCCTTCATTGCAGAGGCGCATAGCAACCATTAGAGCCACAGAGAAGGATGAATCCATCAATGCAAAGTTGG AAACCTTGAAATCCGAACTGAACAACATCAGGGACCTTTTCTCCACAGTCAAGAAAAACCAAGATGAACTCCTCGACACT CTAACACTCCTCGACACCCTTCTTCGCGCATTAGGCACCAAAAACTTCATCCACATCGCAAACCGCATTCTGCAATACCC ACATGATCAAAAAGATCAAAAGTTTCACAACCCAGATGAGAAACAAGATCAAAACAAGAAAAAAATGGAAAGTTTGGAGA AAAGGGTTGAGTTGATGGATCAAGCGTTGGACGGAATTTGCAAGAGCATCAAGGATTCAGCGGAGAAGCTAAAGCCAGGT GTTTGTGGTGGTGGTGGTGGTGGTGGTGCTAGTCAAAGCAGACAAGAATCAGGTGGTGGAAGAGTGAACTCGACGCTGCA TGTGAGCCAAATCATGAACAATGAGTTGGTGGGTCCAGTTTTGAAAAGGATTCAGGTGAGTTATGACAACCTTAATCTTC GTTCAAAGGTTTGCTTGTTGTGTCTCACGGTTTTCCCTGAGAATGTTGTCATGAAGAAAAGGCACACGATTTATTGGTGG ATTGGAGAGGGCTTTGTGAGGAAAACAGGGGAGAAAACAGCAGAGGAAGCTGGTGAGGATGTGTTTGATGAGCTTCTGAG TTGTCATTTGATTGCTCCTCATGGTAATGGCAAGTGTCCTATTGTGAATAAGTTCAAATTGAACCCTTGGATCCGTCACA TGTTGTTGTCTTCAGTGTTGGGTGAAAATGACCACCACCTCTTTGGTTTTTATTCTCAACTAGTAGCCTCTTCTAGTTCT GATCAAAATCAACATGCTTGTTTAGTGCTTGACCAACAAAAAGTTAGAATAAGTGATGCTGATGATTTGGGAGCTGAGAG TTTGAAAACTATTTTCAATGTTGGTGGGAGTTATCTGAATTTTGGATCCAAGTGGATGGAGAAAGCAAAGAAGCTCGTGG TGCTTCAGCTTGGTCGTTGGCAGGATTCGCCTTCACACCACATTGAAGTGGAGAGCGGCGAGTTTCTGAAGGACATGAAG GCTCAGAAGCATTTGAAGTATTTGAGCCTTCGTGGGATATCAAGGATTTCCAACCTGCCAAGCTCCGTTGTTCAAGAGCT TGTCAGCTTGGAAATCCTCGATCTCAAGGCATGTCACAATCTTGAGACATTGCCTGATGACATTGCATCGTTGAGAAGGC TAACACATTTGGATGTTTCCCAGTGTTACTTGCTGGAGAGCATGCCAAAGGGTATTGAGAAGCTCACCGAGCTTCAAGTC CTCAAGGGGTTTGTGATAGGGAGTTCCAGCAAAACTCCTTGCAGGATATCAGATCTAGCGAAATTGAAGAAGCTAACAAG GCTCAGCATTCATATAGGAAGTGAGGCTGTGATCCAGGACAAGGAGTTTGAGAGCTTGAAGGACTTGTCACAAGTCAAGC GTCTCAAGATATCATGGGCTGTGTCTGGTAATCAAGATTTTAGTATCATTTTCCCGGAAAAGTTGGAAAAGCTGGACATT GAAGGCTTTCCTGGACAGAAAATTCCAGGGTGGTTGAGGCCTGGAAACTTGCCTGAGGGATTGAAGAAGCTGTATATAAA GGGAGGGCAGCTCACAAGCTTGGATCATGGTGAAACAGGTATCAAATGGTTTGTGCAGATAGTGCGTCTCAGGTACCTAA AATATCTGAAATCTGACCCGGATTTGAATAAATTGTTTCCTTCACTGAAGTATGCAGAGAAAAAACAAGTGCTGAACCTT TCTTCTGAATATAGCATTGAAGATATATGGGGATGAAAGTATTCATAACATAAGCGATAATTGATGGAACAAATAGAACC CAAGACAGAAATATGGTTAATTATTGATACTCTAAATTGATCCAATGTTGTATCTACATGCATTACTGTTATAGTGAGAT AATTGGGTGTCCTTTCTCATTAATCTGATAAGGTATATATACAAAACTATGTCAAAACATTCCTAATATATTTAGCATAA TTACAGGAATGAATGTAGCCTAATTACAAAGACTAAATAAGAATAATACATATTCATATTCTATCACACCC
CDS sequence (LotjaGi6g1v0166800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTATTCGAACAAACTCCATGAAAGCAGTGCCTTCATTGCAGAGGCGCATAGCAACCATTAGAGCCACAGAGAAGGA TGAATCCATCAATGCAAAGTTGGAAACCTTGAAATCCGAACTGAACAACATCAGGGACCTTTTCTCCACAGTCAAGAAAA ACCAAGATGAACTCCTCGACACTCTAACACTCCTCGACACCCTTCTTCGCGCATTAGGCACCAAAAACTTCATCCACATC GCAAACCGCATTCTGCAATACCCACATGATCAAAAAGATCAAAAGTTTCACAACCCAGATGAGAAACAAGATCAAAACAA GAAAAAAATGGAAAGTTTGGAGAAAAGGGTTGAGTTGATGGATCAAGCGTTGGACGGAATTTGCAAGAGCATCAAGGATT CAGCGGAGAAGCTAAAGCCAGGTGTTTGTGGTGGTGGTGGTGGTGGTGGTGCTAGTCAAAGCAGACAAGAATCAGGTGGT GGAAGAGTGAACTCGACGCTGCATGTGAGCCAAATCATGAACAATGAGTTGGTGGGTCCAGTTTTGAAAAGGATTCAGGT GAGTTATGACAACCTTAATCTTCGTTCAAAGGTTTGCTTGTTGTGTCTCACGGTTTTCCCTGAGAATGTTGTCATGAAGA AAAGGCACACGATTTATTGGTGGATTGGAGAGGGCTTTGTGAGGAAAACAGGGGAGAAAACAGCAGAGGAAGCTGGTGAG GATGTGTTTGATGAGCTTCTGAGTTGTCATTTGATTGCTCCTCATGGTAATGGCAAGTGTCCTATTGTGAATAAGTTCAA ATTGAACCCTTGGATCCGTCACATGTTGTTGTCTTCAGTGTTGGGTGAAAATGACCACCACCTCTTTGGTTTTTATTCTC AACTAGTAGCCTCTTCTAGTTCTGATCAAAATCAACATGCTTGTTTAGTGCTTGACCAACAAAAAGTTAGAATAAGTGAT GCTGATGATTTGGGAGCTGAGAGTTTGAAAACTATTTTCAATGTTGGTGGGAGTTATCTGAATTTTGGATCCAAGTGGAT GGAGAAAGCAAAGAAGCTCGTGGTGCTTCAGCTTGGTCGTTGGCAGGATTCGCCTTCACACCACATTGAAGTGGAGAGCG GCGAGTTTCTGAAGGACATGAAGGCTCAGAAGCATTTGAAGTATTTGAGCCTTCGTGGGATATCAAGGATTTCCAACCTG CCAAGCTCCGTTGTTCAAGAGCTTGTCAGCTTGGAAATCCTCGATCTCAAGGCATGTCACAATCTTGAGACATTGCCTGA TGACATTGCATCGTTGAGAAGGCTAACACATTTGGATGTTTCCCAGTGTTACTTGCTGGAGAGCATGCCAAAGGGTATTG AGAAGCTCACCGAGCTTCAAGTCCTCAAGGGGTTTGTGATAGGGAGTTCCAGCAAAACTCCTTGCAGGATATCAGATCTA GCGAAATTGAAGAAGCTAACAAGGCTCAGCATTCATATAGGAAGTGAGGCTGTGATCCAGGACAAGGAGTTTGAGAGCTT GAAGGACTTGTCACAAGTCAAGCGTCTCAAGATATCATGGGCTGTGTCTGGTAATCAAGATTTTAGTATCATTTTCCCGG AAAAGTTGGAAAAGCTGGACATTGAAGGCTTTCCTGGACAGAAAATTCCAGGGTGGTTGAGGCCTGGAAACTTGCCTGAG GGATTGAAGAAGCTGTATATAAAGGGAGGGCAGCTCACAAGCTTGGATCATGGTGAAACAGGTATCAAATGGTTTGTGCA GATAGTGCGTCTCAGGTACCTAAAATATCTGAAATCTGACCCGGATTTGAATAAATTGTTTCCTTCACTGAAGTATGCAG AGAAAAAACAAGTGCTGAACCTTTCTTCTGAATATAGCATTGAAGATATATGGGGATGA
Protein sequence (LotjaGi6g1v0166800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIRTNSMKAVPSLQRRIATIRATEKDESINAKLETLKSELNNIRDLFSTVKKNQDELLDTLTLLDTLLRALGTKNFIHI ANRILQYPHDQKDQKFHNPDEKQDQNKKKMESLEKRVELMDQALDGICKSIKDSAEKLKPGVCGGGGGGGASQSRQESGG GRVNSTLHVSQIMNNELVGPVLKRIQVSYDNLNLRSKVCLLCLTVFPENVVMKKRHTIYWWIGEGFVRKTGEKTAEEAGE DVFDELLSCHLIAPHGNGKCPIVNKFKLNPWIRHMLLSSVLGENDHHLFGFYSQLVASSSSDQNQHACLVLDQQKVRISD ADDLGAESLKTIFNVGGSYLNFGSKWMEKAKKLVVLQLGRWQDSPSHHIEVESGEFLKDMKAQKHLKYLSLRGISRISNL PSSVVQELVSLEILDLKACHNLETLPDDIASLRRLTHLDVSQCYLLESMPKGIEKLTELQVLKGFVIGSSSKTPCRISDL AKLKKLTRLSIHIGSEAVIQDKEFESLKDLSQVKRLKISWAVSGNQDFSIIFPEKLEKLDIEGFPGQKIPGWLRPGNLPE GLKKLYIKGGQLTSLDHGETGIKWFVQIVRLRYLKYLKSDPDLNKLFPSLKYAEKKQVLNLSSEYSIEDIWG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 34 | 54 | 21 | - | – | |
| MobiDBLite | 90 | 109 | 20 | - | – | |
| Coils | 103 | 123 | 21 | - | – | |
| MobiDBLite | 142 | 163 | 22 | - | – | |
| PANTHER | 185 | 228 | 44 | 1.0E-45 | – | |
| PANTHER | 185 | 228 | 44 | 1.0E-45 | – | |
| Gene3D | 326 | 631 | 306 | 4.2E-31 | ||
| PANTHER | 331 | 573 | 243 | 1.0E-45 | – | |
| PANTHER | 331 | 573 | 243 | 1.0E-45 | – | |
| SUPERFAMILY | 335 | 611 | 277 | 6.12E-24 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0166800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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