Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0169800 |
| Transcript ID | LotjaGi6g1v0169800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protodermal factor 1.1; TAIR: AT2G42840.1 protodermal factor 1; Swiss-Prot: sp|Q9S728|PDF1_ARATH Protodermal factor 1; TrEMBL-Plants: tr|V7BMT9|V7BMT9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0169800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:45516149..45520414) extracted from Lotus japonicus Gifu genome v1.2.
GCTTTCTAAGTCCTAAACTTCTTTAGAGTAAACATAACAAAGAAATGGTGTGTACTTGAAATTAATCAATACCACAAATA TAAGGGACATTTGCACTCAATTCGGCTTACAAGCTTTTTATCAACATCATAAAAGATAGGAAGTGTTAGATTAGGCATGC ATGTTCAGCTGAATGCTAGTCATGTGCTCTTAAAATCATTTCAGAGAAAATCCACCAAAACAGACTTTATTATTACATGA AGAAACAGTGAAGACTATGAGTAAATGCACCCTGCAACATGTCAACTAACCACACACTCCTCCCACCTGCTAATATTTAC TTCTTTGAACCCTTTTATATTCCCTCCTAGCTCCCTAATCCACAGCACTTCAAAATCTCTCAACCCTCTTCTCTGTTCTA TCTCTTGGTGTTCTTCCCAGAAGCTAGACACAATGCAGAGCAAAAGAAGCCATGTCTCTCTTACCATGCTTGCACTTCTT GTTGTGTTGCTTTCTCAGAACCTTGTGATCATTCCTGTAATGTCCTCTACTGTTGGAGAGCAGAAGAACTATTACACTCC AGATCCACATGCTGGGACTCCTCCCACAGGTTTCTCTGATTCTCTATGTAATTCTCTAACTCAAAGCTAGAATAGTATTG CTAGCTTCTTTGGCTCAATTTTTTTTTCTTCCATAATGTAGCATGCATGAAGTTGAATGAAGTTAAAGTTCATAGAAGAT CTTGATCTTTTCCTTTCTCATCTGATATTGCCTTCACTTAATGCAGGCTCACACAAGAGTCCTCCTCCATCTCCTCATCA TGGCTCTGGAGGTGGCCATGGAAGCACTCCACCCTCACATGGAGGAGGTGGAGGTTACTACAACCCACCTTCATCACCAT CACCACCCAAAGGTGGAAACTGTGGATCTTCACCCCCACATGACCCTTCTACTCCAACAACCCCATCAACACCACATACA CCATCAACACCTCATACACCATCAACTCCAACACCATCAACTCCAACACCATCAACCCCATCACCATCAACCCCATCAAA CCCTCCAGGTGGGTACTATAACTCCCCACCACCATCTGGAGGAGGTAGCCCCTCATCTCCACCAATCTCTTTGACCCCAC CAAGCACCCCAACTGACCCTGGCACCCCAATTGACCCTGGCACCCCAAGCATCCCCTCACCCCCTTTCTTCCCTGCCCCA TCTCCCTTCACTGGCACATGCAAGTAAGTTCCTTTCACAAAAAAGAGTACTTTTTGTCTGAAAACACAAAACAGAACATT GTTACCAATTTTATAAACATATAATATATAGCATGGTCCTTTAGATCAGCCTATTTTTCCTCGAAATCAATTCTGACAAT AGAAGCTTCTCATAGAACTTTTTTCAAACATGTAATATGCTACCAAATTATTTCATGACCTGATGGATCCTTAACTTTGA TTTTCAGCTACTGGAGCACTCACCCAGGAATCATTTGGGGAATCCTTGGCTGGTGGGGAAATTTAGGGAGTGCATTTGGT GTGACCAATGCTCCAGGGTTTGGTGCTGGTATCAGCTTGCCTCAAGCACTTTCCAACACAAGAAGTGATGGGCTAGGAGC ACTCTACAGAGAAGGCACAGCTTCCTATCTCAACTCCTTGGTCAACAGCAAGTTCCCCTTCACAACCAACCAAGTCAGGG AAAAATTTGTGGCATCTCTTCACTCAAACAAGGCTGCAGCAGCACAAGCCCGCCTCTTCAAGATGGCCAATGAAGGAAAG ATGAAGCCAAGACCCTGATCTAGATTAAGTTTCTTTGGTGTGTCAGTTTATTATTGAGTTAAGAACAACATTCAATCTCT AAGGTTTCTGCTAGTTTGTGTTTTTTTGTTTAAGACTCCCATTTTGTGCTGATTTATCTTGAGATGGATCTCATTTGAAA TTGAATGCAAGCTTTATGGTTTTAGTTTTGAATAATTTTAGTTCATTTGTTGTTATGATCATATAGTTGCTTTCAAGATC TTTGCTCAGAAGATTCACAATTGATTTTCACCCATAAAGTAGTAATGAAATTGCATTATACTATATTCATCATAAGCATG AGGGAGGTGTTAAAATCATAAATGTTGAAAGTTATCTAGTGAAAGTGTTGCATGTTTGCTGGTAAGATTCAAGTAAGGAA CTGATTTTCACCAATAGGGTAGTAATGGAGTAGTAATGAAACTGCATTATACTATATTTCATATCATAAGCATGAGGGAG GTGTTAAATCATAAATGTTGAAAGTTGTCTAGTGAAAGTGTTGCATGCATCCTACTAAAATACATGTTTGGTGGTCAATA TCTACCTACATACATGTATGGTGAGTTGGTGACAAACATAGAAGGCTATATGCTACAGGGGATAGCCTTTAATGTGAAAA CAACAATTGAATAGCCACAGGTGATCCAGTTAGTGCTATTTAGTCTTTTGTATTTGTCCGCATACTAGTTGAGTTCACAT TTTACATTGAAGCGAGTTTTTTTTTAGATAAGCCAAAATTGATATTGAAAGGGAGTACCCTACTCCAACCAATTACAAAA GAGGTAGAAAATTAGCCAGAAACTAACTACGGATAAAGAAATGCCAAACGCATAAAAGCTCACAAGGAGGTTGTGCCTCA ACCAACAAAACAGATGGTACAGCACTACAAAAAAGACAAAAACAGCATCAACCATAAACAAGCAGCAAATTCAGCAGTGA AAGACTGTCAAACCAGCACCCTGTCAACAAAACAGCATCAACCATAAACAAGCAGCAAATTCAGCAGTTTATTCACCATA GCAGACACAAGCCCGACCAGCAAAATGATCACAGAGAATTTAGTAAAATGCATGGTTGAACTTGCCATTCATATAGGGTG TAGTGGAATCCTTTTATCCTACCTTTGAGCCAACTCCAGGACTTGAATTGTATCCCCTCCAACACTTTATCCATGTCTAC TTGGCCATTTCTGAAAATGATGCTATTTCTAAGGTTCCAAATTGTCCAGATGACAGTTATCCAAACCAGCCATGCCCCTT GTTTTTGTGCTTTCGACCGCCAAGGAAATGAATGCTGCATAAAATGTGCCTTTCCAGTATTAGGCAGAACAGTATAGAGA CCAATCCACTTATAACTAGCCATCCAAACCCTCCAAGCTATAGAGCAAGAGAAGAGAAGGTGCTGGGAAGATTCCTCATA AGACAAACAGAGGGGGCATCTCAAATCTGCTTGGGAAGGGAAAACATGTCTCTTCTTGAGGTTGTCACGGGTTTGGATCC TATCATAAAACACCTTCCATGTGAAAGCTAGTGCGTTTGATGGAGCAGGGACGCTCCACAAGCTGCTGAACACCTCCTCA CCCACCTCACCATCCTGTCCTTGCAAACACATATAGGCTGAGTGAACCGTATAGCTTCCTTCTGGATTGGCAAGCCACCA CCAACTATCAGCTCGGTTCAGAGATGGCACAAATGAATTCAGGGAATTCATCATCTGGTTGAGGAGATCTTCTTCAAAAA CCCGTAAGTTCCTTCTCCAAGAAAAGCACCATACCCAAGTCTCATTTTGCCAATGCCCCACCTCCTTAATGCTGCTGCTT TTTTGATCAGATAAGGAGTAGAGTCTTGGAAAAGTTTCTGAAAACTTCAGATTATTAAGCCAAGTGTCGGACCAGAAAAG AGTTCCACCCCCATCCCCTTCTCTCCTACAAAGTTGATTCTCAAACCAACAATCATTCCCCTCTGGAAAGCACAAATTCT TCAAGTCTTGCCACCACAAAGAGGCTTTAGAAGGACTTGAGCACATATACTTTGCACATAGCACTTTGTTCCACAAGCTG TCCTTCTCTGTCAAAATTCGCCACCGCCATTTGCCCACTAGTGCTTTATTGAATCTGCCCAAATCTTTGATCCCCAAGCC TCCTTCATCTTTTGCTCTGCAAATTGTGTCCCAACTTAGCCATGCTATCTTATTAATGTTATCAACTCCTCCCCACAAGA ATCTCCTCAAGATTTTATGACAATCATTAATAACACCCACCGGAGCTTTATAAAATGAGAGGAAGAAAAGCGGAATTGAG GATAGAACACTCTTTATCAAGCAAATCCTTCCACCAAATGACAACATTTTGTTCTTCCAAGAAGCTAATCACTTCTTTAT CCTTGAAATAACCGGTTCCCAAAATGCCGCCCTTCTTGGATTATCCCCAACTGGAAGCCCAAGGTATTTGAAAGGAATAA CATCAATTAAACAATGAAGGGTGGTG
CDS sequence (LotjaGi6g1v0169800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACCCTGCAACATGTCAACTAACCACACACTCCTCCCACCTGCTAATATTTACTTCTTTGAACCCTTTTATATTCCC TCCTAGCTCCCTAATCCACAGCACTTCAAAATCTCTCAACCCTCTTCTCTGTTCTATCTCTTGGTGTTCTTCCCAGAAGC TAGACACAATGCAGAGCAAAAGAAGCCATGTCTCTCTTACCATGCTTGCACTTCTTGTTGTGTTGCTTTCTCAGAACCTT GTGATCATTCCTGTAATGTCCTCTACTGTTGGAGAGCAGAAGAACTATTACACTCCAGATCCACATGCTGGGACTCCTCC CACAGGTTTCTCTGATTCTCTATGCTCACACAAGAGTCCTCCTCCATCTCCTCATCATGGCTCTGGAGGTGGCCATGGAA GCACTCCACCCTCACATGGAGGAGGTGGAGGTTACTACAACCCACCTTCATCACCATCACCACCCAAAGGTGGAAACTGT GGATCTTCACCCCCACATGACCCTTCTACTCCAACAACCCCATCAACACCACATACACCATCAACACCTCATACACCATC AACTCCAACACCATCAACTCCAACACCATCAACCCCATCACCATCAACCCCATCAAACCCTCCAGGTGGGTACTATAACT CCCCACCACCATCTGGAGGAGGTAGCCCCTCATCTCCACCAATCTCTTTGACCCCACCAAGCACCCCAACTGACCCTGGC ACCCCAATTGACCCTGGCACCCCAAGCATCCCCTCACCCCCTTTCTTCCCTGCCCCATCTCCCTTCACTGGCACATGCAA CTACTGGAGCACTCACCCAGGAATCATTTGGGGAATCCTTGGCTGGTGGGGAAATTTAGGGAGTGCATTTGGTGTGACCA ATGCTCCAGGGTTTGGTGCTGGTATCAGCTTGCCTCAAGCACTTTCCAACACAAGAAGTGATGGGCTAGGAGCACTCTAC AGAGAAGGCACAGCTTCCTATCTCAACTCCTTGGTCAACAGCAAGTTCCCCTTCACAACCAACCAAGTCAGGGAAAAATT TGTGGCATCTCTTCACTCAAACAAGGCTGCAGCAGCACAAGCCCGCCTCTTCAAGATGGCCAATGAAGGAAAGATGAAGC CAAGACCCTGA
Protein sequence (LotjaGi6g1v0169800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHPATCQLTTHSSHLLIFTSLNPFIFPPSSLIHSTSKSLNPLLCSISWCSSQKLDTMQSKRSHVSLTMLALLVVLLSQNL VIIPVMSSTVGEQKNYYTPDPHAGTPPTGFSDSLCSHKSPPPSPHHGSGGGHGSTPPSHGGGGGYYNPPSSPSPPKGGNC GSSPPHDPSTPTTPSTPHTPSTPHTPSTPTPSTPTPSTPSPSTPSNPPGGYYNSPPPSGGGSPSSPPISLTPPSTPTDPG TPIDPGTPSIPSPPFFPAPSPFTGTCNYWSTHPGIIWGILGWWGNLGSAFGVTNAPGFGAGISLPQALSNTRSDGLGALY REGTASYLNSLVNSKFPFTTNQVREKFVASLHSNKAAAAQARLFKMANEGKMKPRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 65 | 65 | - | – | |
| PANTHER | 57 | 195 | 139 | 4.7E-99 | – | |
| PANTHER | 57 | 195 | 139 | 4.7E-99 | ||
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 66 | 86 | 21 | - | – | |
| Phobius | 87 | 376 | 290 | - | – | |
| MobiDBLite | 96 | 257 | 162 | - | – | |
| MobiDBLite | 148 | 257 | 110 | - | – | |
| PANTHER | 179 | 375 | 197 | 4.7E-99 | – | |
| PANTHER | 179 | 375 | 197 | 4.7E-99 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0169800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…