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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0169800 |
| Transcript ID | LotjaGi6g1v0169800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protodermal factor 1.1; TAIR: AT2G42840.1 protodermal factor 1; Swiss-Prot: sp|Q9S728|PDF1_ARATH Protodermal factor 1; TrEMBL-Plants: tr|A0A1J7FWU0|A0A1J7FWU0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0169800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:45516198..45520462) extracted from Lotus japonicus Gifu genome v1.2.
GTGTACTTGAAATTAATCAATACCACAAATATAAGGGACATTTGCACTCAATTCGGCTTACAAGCTTTTTATCAACATCA TAAAAGATAGGAAGTGTTAGATTAGGCATGCATGTTCAGCTGAATGCTAGTCATGTGCTCTTAAAATCATTTCAGAGAAA ATCCACCAAAACAGACTTTATTATTACATGAAGAAACAGTGAAGACTATGAGTAAATGCACCCTGCAACATGTCAACTAA CCACACACTCCTCCCACCTGCTAATATTTACTTCTTTGAACCCTTTTATATTCCCTCCTAGCTCCCTAATCCACAGCACT TCAAAATCTCTCAACCCTCTTCTCTGTTCTATCTCTTGGTGTTCTTCCCAGAAGCTAGACACAATGCAGAGCAAAAGAAG CCATGTCTCTCTTACCATGCTTGCACTTCTTGTTGTGTTGCTTTCTCAGAACCTTGTGATCATTCCTGTAATGTCCTCTA CTGTTGGAGAGCAGAAGAACTATTACACTCCAGATCCACATGCTGGGACTCCTCCCACAGGTTTCTCTGATTCTCTATGT AATTCTCTAACTCAAAGCTAGAATAGTATTGCTAGCTTCTTTGGCTCAATTTTTTTTTCTTCCATAATGTAGCATGCATG AAGTTGAATGAAGTTAAAGTTCATAGAAGATCTTGATCTTTTCCTTTCTCATCTGATATTGCCTTCACTTAATGCAGGCT CACACAAGAGTCCTCCTCCATCTCCTCATCATGGCTCTGGAGGTGGCCATGGAAGCACTCCACCCTCACATGGAGGAGGT GGAGGTTACTACAACCCACCTTCATCACCATCACCACCCAAAGGTGGAAACTGTGGATCTTCACCCCCACATGACCCTTC TACTCCAACAACCCCATCAACACCACATACACCATCAACACCTCATACACCATCAACTCCAACACCATCAACTCCAACAC CATCAACCCCATCACCATCAACCCCATCAAACCCTCCAGGTGGGTACTATAACTCCCCACCACCATCTGGAGGAGGTAGC CCCTCATCTCCACCAATCTCTTTGACCCCACCAAGCACCCCAACTGACCCTGGCACCCCAATTGACCCTGGCACCCCAAG CATCCCCTCACCCCCTTTCTTCCCTGCCCCATCTCCCTTCACTGGCACATGCAAGTAAGTTCCTTTCACAAAAAAGAGTA CTTTTTGTCTGAAAACACAAAACAGAACATTGTTACCAATTTTATAAACATATAATATATAGCATGGTCCTTTAGATCAG CCTATTTTTCCTCGAAATCAATTCTGACAATAGAAGCTTCTCATAGAACTTTTTTCAAACATGTAATATGCTACCAAATT ATTTCATGACCTGATGGATCCTTAACTTTGATTTTCAGCTACTGGAGCACTCACCCAGGAATCATTTGGGGAATCCTTGG CTGGTGGGGAAATTTAGGGAGTGCATTTGGTGTGACCAATGCTCCAGGGTTTGGTGCTGGTATCAGCTTGCCTCAAGCAC TTTCCAACACAAGAAGTGATGGGCTAGGAGCACTCTACAGAGAAGGCACAGCTTCCTATCTCAACTCCTTGGTCAACAGC AAGTTCCCCTTCACAACCAACCAAGTCAGGGAAAAATTTGTGGCATCTCTTCACTCAAACAAGGCTGCAGCAGCACAAGC CCGCCTCTTCAAGATGGCCAATGAAGGAAAGATGAAGCCAAGACCCTGATCTAGATTAAGTTTCTTTGGTGTGTCAGTTT ATTATTGAGTTAAGAACAACATTCAATCTCTAAGGTTTCTGCTAGTTTGTGTTTTTTTGTTTAAGACTCCCATTTTGTGC TGATTTATCTTGAGATGGATCTCATTTGAAATTGAATGCAAGCTTTATGGTTTTAGTTTTGAATAATTTTAGTTCATTTG TTGTTATGATCATATAGTTGCTTTCAAGATCTTTGCTCAGAAGATTCACAATTGATTTTCACCCATAAAGTAGTAATGAA ATTGCATTATACTATATTCATCATAAGCATGAGGGAGGTGTTAAAATCATAAATGTTGAAAGTTATCTAGTGAAAGTGTT GCATGTTTGCTGGTAAGATTCAAGTAAGGAACTGATTTTCACCAATAGGGTAGTAATGGAGTAGTAATGAAACTGCATTA TACTATATTTCATATCATAAGCATGAGGGAGGTGTTAAATCATAAATGTTGAAAGTTGTCTAGTGAAAGTGTTGCATGCA TCCTACTAAAATACATGTTTGGTGGTCAATATCTACCTACATACATGTATGGTGAGTTGGTGACAAACATAGAAGGCTAT ATGCTACAGGGGATAGCCTTTAATGTGAAAACAACAATTGAATAGCCACAGGTGATCCAGTTAGTGCTATTTAGTCTTTT GTATTTGTCCGCATACTAGTTGAGTTCACATTTTACATTGAAGCGAGTTTTTTTTTAGATAAGCCAAAATTGATATTGAA AGGGAGTACCCTACTCCAACCAATTACAAAAGAGGTAGAAAATTAGCCAGAAACTAACTACGGATAAAGAAATGCCAAAC GCATAAAAGCTCACAAGGAGGTTGTGCCTCAACCAACAAAACAGATGGTACAGCACTACAAAAAAGACAAAAACAGCATC AACCATAAACAAGCAGCAAATTCAGCAGTGAAAGACTGTCAAACCAGCACCCTGTCAACAAAACAGCATCAACCATAAAC AAGCAGCAAATTCAGCAGTTTATTCACCATAGCAGACACAAGCCCGACCAGCAAAATGATCACAGAGAATTTAGTAAAAT GCATGGTTGAACTTGCCATTCATATAGGGTGTAGTGGAATCCTTTTATCCTACCTTTGAGCCAACTCCAGGACTTGAATT GTATCCCCTCCAACACTTTATCCATGTCTACTTGGCCATTTCTGAAAATGATGCTATTTCTAAGGTTCCAAATTGTCCAG ATGACAGTTATCCAAACCAGCCATGCCCCTTGTTTTTGTGCTTTCGACCGCCAAGGAAATGAATGCTGCATAAAATGTGC CTTTCCAGTATTAGGCAGAACAGTATAGAGACCAATCCACTTATAACTAGCCATCCAAACCCTCCAAGCTATAGAGCAAG AGAAGAGAAGGTGCTGGGAAGATTCCTCATAAGACAAACAGAGGGGGCATCTCAAATCTGCTTGGGAAGGGAAAACATGT CTCTTCTTGAGGTTGTCACGGGTTTGGATCCTATCATAAAACACCTTCCATGTGAAAGCTAGTGCGTTTGATGGAGCAGG GACGCTCCACAAGCTGCTGAACACCTCCTCACCCACCTCACCATCCTGTCCTTGCAAACACATATAGGCTGAGTGAACCG TATAGCTTCCTTCTGGATTGGCAAGCCACCACCAACTATCAGCTCGGTTCAGAGATGGCACAAATGAATTCAGGGAATTC ATCATCTGGTTGAGGAGATCTTCTTCAAAAACCCGTAAGTTCCTTCTCCAAGAAAAGCACCATACCCAAGTCTCATTTTG CCAATGCCCCACCTCCTTAATGCTGCTGCTTTTTTGATCAGATAAGGAGTAGAGTCTTGGAAAAGTTTCTGAAAACTTCA GATTATTAAGCCAAGTGTCGGACCAGAAAAGAGTTCCACCCCCATCCCCTTCTCTCCTACAAAGTTGATTCTCAAACCAA CAATCATTCCCCTCTGGAAAGCACAAATTCTTCAAGTCTTGCCACCACAAAGAGGCTTTAGAAGGACTTGAGCACATATA CTTTGCACATAGCACTTTGTTCCACAAGCTGTCCTTCTCTGTCAAAATTCGCCACCGCCATTTGCCCACTAGTGCTTTAT TGAATCTGCCCAAATCTTTGATCCCCAAGCCTCCTTCATCTTTTGCTCTGCAAATTGTGTCCCAACTTAGCCATGCTATC TTATTAATGTTATCAACTCCTCCCCACAAGAATCTCCTCAAGATTTTATGACAATCATTAATAACACCCACCGGAGCTTT ATAAAATGAGAGGAAGAAAAGCGGAATTGAGGATAGAACACTCTTTATCAAGCAAATCCTTCCACCAAATGACAACATTT TGTTCTTCCAAGAAGCTAATCACTTCTTTATCCTTGAAATAACCGGTTCCCAAAATGCCGCCCTTCTTGGATTATCCCCA ACTGGAAGCCCAAGGTATTTGAAAGGAATAACATCAATTAAACAATGAAGGGTGGTGGCGTAACTTCTCAAAGTCTGTTC CCCTAATGATATCCCTATCAATTTG
CDS sequence (LotjaGi6g1v0169800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTAAAGTTCATAGAAGATCTTGATCTTTTCCTTTCTCATCTGATATTGCCTTCACTTAATGCAGGCTCACACAA GAGTCCTCCTCCATCTCCTCATCATGGCTCTGGAGGTGGCCATGGAAGCACTCCACCCTCACATGGAGGAGGTGGAGGTT ACTACAACCCACCTTCATCACCATCACCACCCAAAGGTGGAAACTGTGGATCTTCACCCCCACATGACCCTTCTACTCCA ACAACCCCATCAACACCACATACACCATCAACACCTCATACACCATCAACTCCAACACCATCAACTCCAACACCATCAAC CCCATCACCATCAACCCCATCAAACCCTCCAGGTGGGTACTATAACTCCCCACCACCATCTGGAGGAGGTAGCCCCTCAT CTCCACCAATCTCTTTGACCCCACCAAGCACCCCAACTGACCCTGGCACCCCAATTGACCCTGGCACCCCAAGCATCCCC TCACCCCCTTTCTTCCCTGCCCCATCTCCCTTCACTGGCACATGCAACTACTGGAGCACTCACCCAGGAATCATTTGGGG AATCCTTGGCTGGTGGGGAAATTTAGGGAGTGCATTTGGTGTGACCAATGCTCCAGGGTTTGGTGCTGGTATCAGCTTGC CTCAAGCACTTTCCAACACAAGAAGTGATGGGCTAGGAGCACTCTACAGAGAAGGCACAGCTTCCTATCTCAACTCCTTG GTCAACAGCAAGTTCCCCTTCACAACCAACCAAGTCAGGGAAAAATTTGTGGCATCTCTTCACTCAAACAAGGCTGCAGC AGCACAAGCCCGCCTCTTCAAGATGGCCAATGAAGGAAAGATGAAGCCAAGACCCTGA
Protein sequence (LotjaGi6g1v0169800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLKFIEDLDLFLSHLILPSLNAGSHKSPPPSPHHGSGGGHGSTPPSHGGGGGYYNPPSSPSPPKGGNCGSSPPHDPSTP TTPSTPHTPSTPHTPSTPTPSTPTPSTPSPSTPSNPPGGYYNSPPPSGGGSPSSPPISLTPPSTPTDPGTPIDPGTPSIP SPPFFPAPSPFTGTCNYWSTHPGIIWGILGWWGNLGSAFGVTNAPGFGAGISLPQALSNTRSDGLGALYREGTASYLNSL VNSKFPFTTNQVREKFVASLHSNKAAAAQARLFKMANEGKMKPRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 11 | 18 | 8 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| MobiDBLite | 21 | 166 | 146 | - | – | |
| Phobius | 24 | 285 | 262 | - | – | |
| MobiDBLite | 57 | 166 | 110 | - | – | |
| PANTHER | 88 | 284 | 197 | 5.3E-79 | – | |
| PANTHER | 88 | 284 | 197 | 5.3E-79 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0169800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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