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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0170900 |
| Transcript ID | LotjaGi6g1v0170900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II transcription factor SIII (Elongin) subunit A; TAIR: AT2G42780.1 transcription elongation factor B polypeptide; Swiss-Prot: sp|Q09413|ELOA1_CAEEL Transcription elongation factor B polypeptide 3; TrEMBL-Plants: tr|I3S977|I3S977_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0170900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:45770266..45775311) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGTACCGCGAATCACCCTTTTCTACTGTACAATACCTCCCTCACGGCGCAAGTTAGCATACACCAATCTCCCACAAA AAGCGCGTGAAATTCACGCGCGTGCGTGAGTCTTCCTCATCTTGCAATCATAGAACACACACAATCTCTCATCACCGTCT TGTTCCTCCTCTCCGATTCACCGGCGTTCCTGATCCATCTTCGTTTCAATCGAATCTGTAAGCAAGCCCCAAATTTCTCT GTGTCTTGTGCATCTGAATGATTATCTGAATTATCTTGATCAGTTTTTTTTTTAATCTGATTTCGATTTTGAGATTAAAT ATTGAAACTTTTCTGATTTTGGGGATTGCCCTTTTGATTGATTTTAATTTGGGATTGGGATTCGTGGGGAATGCTTAATT TTTAGTTATTTGTTGATAACTAGGCAAAGTTTATGTAACAAGGGGAACCTTGTTGATCTGCAAGTTGTGATGTTATGAAA TTAGTACATGTAAAATGTTAGTGTGACCAGTGGCCAAGTTCAATTTTCTAAGTTTTCATTTGTACACAAAATTTATTGTG TTTAATAGATTAGTTGTATTGTAGCTTCTATATAGCTCAGGTGTTTTTTTTGGTTTTGCTTTCTTTGGGGTGTGAATGGT GATTTTAACTACCAATTTATGAACCCAAAAAGAGAATAAGGGATGGTATTTGGGTATTTATTGTTATGGTCTTGGCTATG TAGGGTCAGTTTACTAAGAAACAGGAAAATAGAAAAATTATTGTATGAGCTGATTTTAGTTGGTGTTTGTTAGTGAAATT TGATTTTTATTGTTTTCTTGGTCATCAGTGTAATTATGATGAGAAGAGATCAAGTGCCTGTGCGTAAGCTGCCAAGCCTG GTTGATCTTTGTGTTGAGAAAGTGATAGACAATTTAAGGTACCTTGGAAATGTTGGCTCTGTTGATCACCATCTGCTTGA GCGAATCTTGCCGCACTGCACACTCGAACAGTTGATGCATGTGGAGAAGGCTAGCGTGGTAAGATGATCGGGCTTTGTTG TTTTTCTTAATTTTGAATGAAGTTGGAACTAGACTAAAATGATTGTATAATTTTGTTGACGTTTTTCTGCAGGGATGTGA TCTGAGCCCTGTAACTGATAAATTGTGGAAAAAGTTCTTTGAGAAGCAGTTTGGCACACATAGCACTAATGAAGTAATTA AGAGGATGAGAGAGAAAAAAGTGTCATTTAAATGGATGCAGCTGTATGAGGTAACTTTTTGTTTGTTTTATTGTTTTGAG ACTCTTCTTATTTCTTTTCAGACTCAGTTATATACTTATAGTTTAGATGAAAGAGCAGAATTAAGTGTAGCTCATATAAC TCTTTCTTTCCTTTTTCCCTGTAAGAGACACCATTGTCAGTTGTGCTAACTAGGTAACATCCATATTCCATAGTAGTCAA AATCGTGCTCAGAAGCGCCTAAATGTATGATTCAGCGGTTCTTGAACCCAGTCCGCTTTGTTCACTAACTAAATCCTAAA TCATTCTAAATCGTTTCCAAATCGGTGCTAAATCAAGATTTCAATAAACTTAGCGATTTAGGGAGATCTGGAATGAAACG GGTTTTTTTTTTTTACCTTTTTGGGGTCGACCCAGGTTCGAATTTTGCAACTGAAAACCTTAGTGGCTAGCACACATACT CACTTCTCTCAAACAGACAAACACTCACCTCGCATGTTCGAAGTCACAACCGAAGCAAGGGCAGCCGCGACCACGAACAG CAACGATGAAGGCTGCCGGCGACATTCCTATGGATTATGAGTTGTGTTTAATGACACTTTATGATTTATGCAAGACAATC CTAAGAATTTTGGTTATTTGTGCTATTTTATATGTACATAAGAATCTATGTGTAAATATAAATAGCAAAATCTACTAAAT CTTACGATTTAGGTTTCGCTTTAGCGATTTACAATTTACAACCCCTCTCTGCTTTAGATCTAAATCTCGATTTTGACTAC CATGGTAACATCCTTCATGCTGTTAGAACTTAGAATTAAGCATATATTGAATGAATAATATGAGCTGTTAGTGACTCTTA GTGCTTTGACATAGGGAATGATTCTTCCATAGTAGTCAATAGCGCACTATAGCAGTGTAGTGGAGCGGCCTCCTGCCGCT ATGGAGGTGAAATTGCGTCGCAGATTGCAATATCAGCTGGAGTGGCGCAATTGGGAAATGGTGGTGTTCTGACAAAAAAA CCCTCAAATTTACAATGTTTGGGGAACACTTTGCGGTGACTTGCAGCTATCCCCTGCGGCCACCGTCCCTGATTCCCTTG GGTCTCTGTTCTGTTCTGACATTTCTTATCTGTCAGGTGGGCCTGTTCTGTTTTTTACCTTTCTTTTCCTCTGTTTTTCT TTCCTTTCCTTTCTCTTCTTGATTTCTCTTAATCATTTTATTTTGTTACCCTCCAATCCTCTCCTCTTCCAGCATGGCAT CCTCCTCCCCTCTTCTCTATCATTTTAATATGTTATGAATTGTTAGTTATATTTATATTTTTTTAGTATTTGTATGCATA TAGTATTAAATTATTAATTATATAAACTTGTATATTGAAAAGCAGCGTAGCGGCCATCCTGCTATCCCACTTTTGGGGCC GGCCGCTATCCGAGATTGACTCCTATGAATTCTTCTCATGATAGATAGTGTAGAATGTAAATATGTAAATGTGGAACTAA TTAGGGACATGGGTTTATTCTTAATTCTATTCACAGGCAAAAGTGAAGGAAATAGCTGAGGCTGAGAATGAAGCAGTTGC TCGAATCAAGCAACGATACCAGAAAGAAGATGCAAGTATGAACTAGCAACTTATTATTATTCCTTGTTTTTGCTGCTTTG TTTAAGGCAAATGTCTTTTCCTCTGCCGTTGTTGTAGTTGTATTCCCTTCTAATAAATATGCTTGCTTTATACAAAATAA TGCTACTAATTTAACTATTAATTGCTCTGATTGGATTTGATGAGCTTTAAATTTTACACCATAGAGCAATGTAGCAATTT TCTTAGTTATATTTCTTACTACCTGCTTAGCTTAAAATACTTATCAAGTTTTGTTGGAACTATGCAGGAAAGCAAAGTAG GCAAGTACAGCTATGCACTAAAACTCCACCTTCGAGTAAAAAAAGATTTTGGGGAGGTAACTTCTTTGATTTCCTTGTCT GTTTCCTTCTTAATTCCCTCTACTACTGCACTTTATATATATGCGGGTTTTAAATTTGATCAAATTGTGCAGCTTTTATT TGTTAGTTTTACTTCATCTTTGAGAATCTGTTGTAGATAATGGATACAATGTATCAAATCTGAAGAGCAACATAATGAAG AAGTCAAGGATAGAACTTCTAAAGAGGTAACCTTTCTTTTACGATTATTCGTTGCATCAGAAGTCTTTAAGTCCAACCAA GACATACATCTAGTTAAGAGAGTGAGAGAGCTTTCCCTTGGAAGGAAGTTCAGCTTTTTCATTTGATCATTAGGAAACTT ACTCATGCTTGTTCGTGTAGCACGTACTGTTAGATTATATAGCTTTATTTTACTATTTGTCTTAAGGGTAGTATAGTCTT TTACTTGTTGTCGATTTATATTTGTTATTTCGCTTTCTATTGTAACAATTATTCCCAATGTAAACCCTAGCGCCTCTTTG TTCTCTCTTCTTCCCCTCTCCCTCTTTTCTTTGTATTGCTTCTCTTAACAATGATGGCACTCATTTATTTATCCTCAAGC TTTCCTACTGCACACTCTGTTAATTTGAACTAAATTTGGTTCACGAAACATTTGCTTAGAATTTCGTAACATACTATTTA AAATCTTTCCTCGATTTCCTAATAAGAAGGAGTATTTCTGTGGTGACTTTATATTGAAAAAGAAAATCTTAGAACTTATT TAATCATGAAGCATACTAGAAATTTTACTAGGGTAAATCTGTACTGTGATCTCAATTGAATATTGACTTCAATTTTTTTC CCCTGAATTTCTTACAGTCATGAGGTGAAAAATCTTGCAGCAATGAAGAACAAGTCCATCCAGAGAAATAACAGGTACAT TTACCATCAATTTTTTTTTACAGGAACAGTTAGTTATTGCCTCCAAAACAAAGCTTGTCCTCTTTTACCTCAATAATCCT CATGTTGTGTCTCTATGTTCTGCAGTCCATCAAGCTTCATGAAGTCTGGAAATGGTTCAAGTTCAAAAGATCCCAGATCT GCAAAAAGAATATCTTAGGGAGCAGAATGTGAAAGTTAGCAATTCTATGTAACATTATTTGCTTTTAAATTGTGGTAAAA AAACTAAAAATAGTTCCATTTATCTCCATGCTGAGAAAAATTGGCTTTCTTTTCCCAGTTAAGCGACTTCACTTTTGTGT GCTTTTGTACTTACCCCGTAGATATCATCAAAATATGCTATGGTAATTGCTGTAATATATTGATTTCATTATATAAATGA AATTACCATTCGTTTCCAGTAGTTGGACCAACCGCTTTCTAATTTTTTGTTCAAAAAGAAAATGCCTTTCATAAGCATTT TTTAGCATATTATCTGTTGGGATTTAGTTCCTCTATAGTGAGTATAAAGTTCAAGGCCTTCAAATTGGGCTAGCTTTCTG TCTGGAAGAGAAGATTTCAGCTTCAAGACCTGAAACGGTGATGATATGTTGAATTGCATGTCTCCGAACGTAGTTCAAGT GATAAGAGATGGGGAACATGTGGTATCGAATACGTCTTCTACTTAACACGCAAAATCGATCCTCCTTCTTCCTCATCTTG CTTTCATGGCTTCCGTCTCTAACATCACCATCTCGACATATTCAGCTTACTCAGCTACCTCTTTCCATCTATTGCATCAT CATATTGGCCATCCCTCCACTAGAGTTCTTCATCATGCTTTCAAGTCAAACAACATCCCTCTTCAAGAGGCTCATCAAAT AAATGTCACAATTGTTTGGCAAATAAGAGCCACAAGTTACCTTTCAATAGGTTGTCTTCATCTTGTTCTAGTCCTTTAGA AATTGT
CDS sequence (LotjaGi6g1v0170900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGAAGAGATCAAGTGCCTGTGCGTAAGCTGCCAAGCCTGGTTGATCTTTGTGTTGAGAAAGTGATAGACAATTT AAGGTACCTTGGAAATGTTGGCTCTGTTGATCACCATCTGCTTGAGCGAATCTTGCCGCACTGCACACTCGAACAGTTGA TGCATGTGGAGAAGGCTAGCGTGGGATGTGATCTGAGCCCTGTAACTGATAAATTGTGGAAAAAGTTCTTTGAGAAGCAG TTTGGCACACATAGCACTAATGAAGTAATTAAGAGGATGAGAGAGAAAAAAGTGTCATTTAAATGGATGCAGCTGTATGA GGCAAAAGTGAAGGAAATAGCTGAGGCTGAGAATGAAGCAGTTGCTCGAATCAAGCAACGATACCAGAAAGAAGATGCAA GAAAGCAAAGTAGGCAAGTACAGCTATGCACTAAAACTCCACCTTCGAGTAAAAAAAGATTTTGGGGAGATAATGGATAC AATGTATCAAATCTGAAGAGCAACATAATGAAGAAGTCAAGGATAGAACTTCTAAAGAGTCATGAGGTGAAAAATCTTGC AGCAATGAAGAACAAGTCCATCCAGAGAAATAACAGTCCATCAAGCTTCATGAAGTCTGGAAATGGTTCAAGTTCAAAAG ATCCCAGATCTGCAAAAAGAATATCTTAG
Protein sequence (LotjaGi6g1v0170900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRRDQVPVRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKASVGCDLSPVTDKLWKKFFEKQ FGTHSTNEVIKRMREKKVSFKWMQLYEAKVKEIAEAENEAVARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDNGY NVSNLKSNIMKKSRIELLKSHEVKNLAAMKNKSIQRNNSPSSFMKSGNGSSSKDPRSAKRIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 214 | 206 | 4.6E-97 | – | |
| Pfam | 31 | 139 | 109 | 1.1E-26 | ||
| Coils | 111 | 134 | 24 | - | – | |
| MobiDBLite | 188 | 222 | 35 | - | – | |
| MobiDBLite | 190 | 216 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Cellular component | Elongin complex | A transcription elongation factor complex that suppresses RNA polymerase II pausing, and may act by promoting proper alignment of the 3'-end of nascent transcripts with the polymerase catalytic site. Consists of a transcriptionally active Elongin A subunit (abut 100 kDa)and two smaller Elongin B (about 18 kDa) and Elongin C (about 15 kDa)subunits. |
Expression pattern of LotjaGi6g1v0170900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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