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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0174500 |
| Transcript ID | LotjaGi6g1v0174500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-hydroxyisobutyryl-CoA hydrolase-like protein; TAIR: AT1G06550.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Swiss-Prot: sp|Q9SHJ8|HIBC8_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 5; TrEMBL-Plants: tr|I3SVG7|I3SVG7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0174500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:46480457..46483327) extracted from Lotus japonicus Gifu genome v1.2.
AGATGTCTTTACATTGTCTACACTCTTCTGAAGAGTAATGTATTTCTCCTTGACAGAGGATTCCTGCCTTGAAGTGGTCT ACCGATTTTACTGGCTTTGCTATCACATCAAAACCTATAAGAAAACCCAGGTTCTGTTCAGGAACTTAATTCCATTTTGT CCTTAAACATTCATAGCAATGTGGTTGTGACAATTCAGTGATGTCTCATGTTTTCTAGAATGGTGCTGTAATGTTTTAAC AGGTTGCTCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGCCCCTATGAAGTTCTCAGTCGTAACCGAG AAAACTGTGGGTATTTTATCTTCTTAGATATTATGTTCTAAATCCTTGTTTAGTTAGTTTTATGATGTACTTATCAAGTG CACCATCTCCTTAAATTTTCTTGGTGTGTTAAAACAAATGCTGACAGGTTTTTGCCACTCCTGAAGCAAGTTTTGGGTTC CATACTGATTGTGGCTTCTCGTACAACCATTCTCGTTTACCAGGGCATTTGGGTAAACCACAATCTCACTTACAATTCCT TTTATGAATCCTCTTTCACTGTTCAGAAAAGTTCCCCCCTTGCACTTCTATCTCCCTGGTTGTTTATTCCTCCATGACAG CACAAGTGTATATGAATTTCCTGAATTAGAACAAAATGTTTTCAAAATAGAGAAAAAGAAACATTAATTGATTACATAGA AAAGTGGAGAGATTATAATTCATATATGTCATACACAGGTGAATACTTGGCACTTAGTGGAGCAAGGTTGAATGGGAAGG AATTAGTTGCAGCTGGACTGGCAACCCATTTTGTCTCTTCTGAGGTTTGATTATGTTTAGCTTCTGGTCTCCCTCTAGAC GAATTGGCTAAGAATAGTTACTTCTTACTCATGCTAGTGTAATCATAGTTTCATAACCGATTGTTGTTAAGGCAAGAGGC AGTGTCTAGTTAAATTACAAAAATCTCATTCAATCTGTGTCATCCTGATTCGAATTAATTTGTAATCTAATGAGAAGCTT GGAGAGTGTTAAAAAAAACCTAGGATACATCTATATTGTTTTCTTCATAAAGGATGTAAACATGGTTAAATCAGCAATGG CATCTGGCATAGCAATCCAAATTTGTAAGTAGTACTATAGAGTATAGACAGCTCCACAAAGTACACAATTTCAATTTCAC GAAGTACACAAATCTAAGTGCCTCTCCCATCCACCCCTCCAATTATAGCGAACCTTCTGGGTCTTATAAACAACCATTAC CATATCTTTGCTAGAGATAATGAGTTTGTGTTAATTTGTTAATGATCCTTACATTTTCTGTGTACCAGCAAATTGATGAG CTAGAGAAGCGCCTGATCAGCTCAAACTCTGGTGATGAGAATGCTGTAAGATCAGTGATTGAAGAATTTTCATTAGAAGT TAAAATTGATGAAGAGAGTATCCTAAACAAGTAATTTCTTTTTTCTTTTTACCAATGATCTGTAATTTGTTTTCTAAATT TATGCTTGACAGTAACATTTGGATAATTTCAGGAAGTCAATAATTGATGAGTGCTTCTCAAAGGATTCTGTTGAAGAAAT TATAAAATCATTGGTAAGTTTCTAAGCATTTCCATATGAATATTTATTATCTTACTGCATGCTTGTGTTCTTTCTGGGAA ATTATATGTTTATATTCTTTGATGTGAAGGAAACTGAAGCACAAAAAGAAGGAAATGGATGGATAGGTGCAGTTTTAAAA GGAATGAAAAGATCATCACCTACTGCATTGAAAATAGCCTTAAGATCGGTAAGGATTTTATGATATACATTAGGATCTTA GAGTGGATTCTATAACTATATTGAGTTCCTCAAATTATGATTGGCAAATAAGGCTCAAGGTTGAAGCAATCAATGATATT ATGAAATAACATTTTGTAACATTTTTATATTCCCTGAAGTTTTGATTGTGTTTAAACGTCACGAGTAAAGTCCCTTCAAT GCTTTTAAAACTACATTCTGTCAAAATTGAGAAGAGACTAAATCAGGACAAAGAACAGAAAATGTTAAAGCATAATCTAG TTGATCACTGAGTCTCTGGACATGAAACTGAATGAATTATCTTGGATATGTGCAGGTTCGCGAAGGAAGGAATCAAACAC TATCTGAATGTTTAAAGAAGGAATTCGGATTAACAATTAATATACTCAGAACTGTAATATCTGAGGATATGTATGAGGTA ATTGTTGTGATCTTATTTCCAGAACAAGCTCAATGTTGTCAAAAAATGTTTGAATAGTCTGTTCCCTTCTAAAATCTGAA GCAAATTTTTGTTCTATTTCAATGAGAAGGGTATTAGAGCTCTCACCATCGACAAGGATAATTCTCCAAAGGTACTCCTT CACTGTTTCACTCATAGTCTTGACTAGAACAATGCTATCTATTTGGTTTGGAAATTAGCACACATCGAGGTCAATTAAGG AATGCCAAATAAAAACTTGAACGTGAAGTGAAAATTTAAATTATTATTATTATATTTGTGCAGTATCAAAATAAGTATTA ATAACTACATGCTACTTGCAGAATCATGTACATAGGTTCTTTTATTGGTATTATTCTTATTGTTTTGCCTTTTATAACAC TAAATGATTGAGTTGTTCAGTGGGAACCTCCATCACTTGATAAAGTAGAGGATGGAAAGTTGGACTTAATCTTTCAGCCA TTTGATAAGGATTTGGAGCTACAGATTCCAGAAAGGGAAGAAAACAGGTTGGTTGCTGTTTGAGTTTTTCTTCACTAGTA TGATGTCTTCTTAAACTTGTTATTCTAACCAAAATCCCTTTCTCTAATTCCAAACAGATGGGATGGTAGAT
CDS sequence (LotjaGi6g1v0174500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTTCTCCTTGACAGAGGATTCCTGCCTTGAAGTGGTCTACCGATTTTACTGGCTTTGCTATCACATCAAAACCTA TAAGAAAACCCAGGTTGCTCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGCCCCTATGAAGTTCTCAG TCGTAACCGAGAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGGTTCCATACTGATTGTGGCTTCTCGTACAACCAT TCTCGTTTACCAGGGCATTTGGGTGAATACTTGGCACTTAGTGGAGCAAGGTTGAATGGGAAGGAATTAGTTGCAGCTGG ACTGGCAACCCATTTTGTCTCTTCTGAGCAAATTGATGAGCTAGAGAAGCGCCTGATCAGCTCAAACTCTGGTGATGAGA ATGCTGTAAGATCAGTGATTGAAGAATTTTCATTAGAAGTTAAAATTGATGAAGAGAGTATCCTAAACAAGAAGTCAATA ATTGATGAGTGCTTCTCAAAGGATTCTGTTGAAGAAATTATAAAATCATTGGAAACTGAAGCACAAAAAGAAGGAAATGG ATGGATAGGTGCAGTTTTAAAAGGAATGAAAAGATCATCACCTACTGCATTGAAAATAGCCTTAAGATCGGTTCGCGAAG GAAGGAATCAAACACTATCTGAATGTTTAAAGAAGGAATTCGGATTAACAATTAATATACTCAGAACTGTAATATCTGAG GATATGTATGAGGGTATTAGAGCTCTCACCATCGACAAGGATAATTCTCCAAAGTGGGAACCTCCATCACTTGATAAAGT AGAGGATGGAAAGTTGGACTTAATCTTTCAGCCATTTGATAAGGATTTGGAGCTACAGATTCCAGAAAGGGAAGAAAACA GGTTGGTTGCTATGGGATGGTAG
Protein sequence (LotjaGi6g1v0174500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYFSLTEDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVTEKTVFATPEASFGFHTDCGFSYNH SRLPGHLGEYLALSGARLNGKELVAAGLATHFVSSEQIDELEKRLISSNSGDENAVRSVIEEFSLEVKIDEESILNKKSI IDECFSKDSVEEIIKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFGLTINILRTVISE DMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIFQPFDKDLELQIPEREENRLVAMGW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 291 | 287 | 5.5E-80 | – | |
| PANTHER | 6 | 296 | 291 | 7.4E-168 | – | |
| PANTHER | 6 | 296 | 291 | 7.4E-168 | – | |
| SUPERFAMILY | 7 | 259 | 253 | 2.37E-31 | ||
| CDD | 12 | 126 | 115 | 1.29035E-22 | – | |
| Pfam | 12 | 276 | 265 | 1.2E-83 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | 3-hydroxyisobutyryl-CoA hydrolase activity | Catalysis of the reaction: 3-hydroxy-2-methylpropanoyl-CoA + H2O = CoA + 3-hydroxy-2-methylpropanoate. |
Expression pattern of LotjaGi6g1v0174500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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