Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0176000 |
| Transcript ID | LotjaGi6g1v0176000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein, putative; TAIR: AT2G43000.1 NAC domain containing protein 42; Swiss-Prot: sp|Q9SK55|NAC42_ARATH Transcription factor JUNGBRUNNEN 1; TrEMBL-Plants: tr|A0A0R0EYY2|A0A0R0EYY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0176000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:46617318..46620732) extracted from Lotus japonicus Gifu genome v1.2.
AGGTAGTCTCCTCCATCCTTCTCCAAACAACTCATTGAGTTGTGTGAAGCTCAGCTTCAAGGTTCCACTGAGACCACGTA TGTGTGTGTGTCTTAATCAAAATGCTTGACTAGACTTCAGCTGCATGCCAATTTACTCAACATGCACAATTGGACACATT AATATAAATATGTGGAAAGGAGGGAGGGTTGTTTACAGCACAAGAAACTTCTTATCAGTTTGAAAATCTCCAGTACTGCG GCTGGAAACAAATATTTCAAACAAAAAAGAAGAAGAAAACATGGATGTGGTTCAGTTACACACTCTATCTGAAACTGATG ATAAGATGAAGGAAGAAGAAGTTGTGCTTCCTGGGTTTAGATTTCATCCAACAGATGAAGAGCTTGTTGGGTTTTATCTC AAGAGAAAGGTGGGGAAGAAGCCTCTCCGAATCGATCTCATCAAACAAGTTGACATCTACAAATACGACCCATGGGATCT TCCCAGTAAGATCTGCTTCCACTTATGCTCTCTTGTTAATTGTTATTTTAATTTCTACATACAATACTGAAATCTAAGTG TTTTCTTCTCCTTCTGAACTTAAATTTAATTTTATGAAGAATTTGCTTGATTATATGATTGATTCCAATAATTAAAAACT TGTCTCAGTAATTGATGAAGGCACGATTGTTGTAATTAATTAAATGAAACAATGAGATCGATTTCATGTAAAGAACTCTC CAATGAGTCTCTGTGTTGTGTTATGCAACTTATGCAACACACTACAAATTGAAAAGGAATTGAAGTTAGAGACTTGGAAT GCATTTCAGGTCTAGTGCATTTTTCGAACTTTTTTTTATAGCTAGAGCTCAATAATAATTAATTGAGTTCTTATACACGG GAATACAAAACCTTCCGACACATTATTTTGCGGTAGTTTTTAACTCCACCAAAGTTAGCTGCTGTTAAAACCCCCGCTAA ATGGCATGATCTTGCATATCTAAACATCATTTCCGTAATTATTTCAATGACTTTGAATATTTTATTTATTTATTTATTAT TTTCTGGTGATTATGTTTGAAGAAGTGAATTCAGTTGGGGACAAAGAATGGTACTTTTTTTGCAAGAGAGGGAGAAAGTA CAGGAACAGCATAAGGCCAAACAGGGTGACAAAGTCTGGGTTCTGGAAAGCCACAGGGATTGACAAGGTCATATATAGTG TTAAAGAACCTCATCATCAAAGCATTGGCCTCAAGAAATCACTTGTCTACTACCGTGGAAGTGCTGGGAAAGGCACCAAA ACCGATTGGATGATGCATGAGTTTCGCCTTCCACCAAATAATCCACATGATGCTAATGCAAGCAATGACGTTCAAGAAGC TGTAAGTCAATAATTACCCGTTTAGATACACATTAAGGATTACTTAATTGTTAGAGTTTATTTACTGCATCTCTTAATAT TATATAGATAAGCTTCAATATAATAAGTCAGTATCTAAACCGGCATATATATATATATATATATATATTGTTCTTATTTG CACCTTGCAACAAGAAATTCAATGTACGTAGTCCTTAACATATAGCTCTCTATATCATATATTTTATGTACAAATACATC ATATGATACAACTCATACAAGTCATGGGATGACATAACACATTCAAATTATTACTGATTGATGATATTCTTGGTCAGAGA AATAAAATATGTTTCATGTTCAAGTAACTAAAAATTTACTATCAATAATGATTGCTTAGACATACGAATATTAATACACT TAATAGATATTTTATCATTTTCTTAAGATTTTTTTTTTATCATATATCACATTTATTATTTTTCTTTCTTCTCTTCATTT CTCACTTTAAATGTCCATTGGATGTATGTATTATATGTATATTTACAAAACAATTTTCGTTTACTATTCTATGTATAAAC TATTCTAGATAGGAAGCATGACTAGACTACATATTAGGAGGGAAAATTCTAAATACCAATGACACACATTTCATAAAGTT TGATTTTTGTGAAGTTTAATTTGACTTAGATCTTTGACATACATATAGATGCAAACATTCGCCTCCACATGTACGGACAA AATTTTAGACTGCTCTGAAAAGTTGACAAAAGGTAAAATAAAATGATGCAAGCCATGAGTATGAGCTTTTAAGGCTTTTT TTGAATAAAAGATTCTAGATCACGGCCCTAGATCACTATGAACGGGTTAAAACCAAATTTACCAATGTATGGAACACTTC AATTAAGGAAAAAGTCAATTAGTGGTGTGGTGGTGTGACCCAAAAAGAGAAGGTGGATCAGAGGTAGGAAAAATGGTGGA GAAATTAAGCCCTGAAATGTTATCAGGTTGAAATAAATTGCATTTATTAGCTTGGTCCATGTCATGAACTTTAAGCATAT GAGCCAAGTCTACTCCTTTAAATACCAACATTTTTGGCTGAAAGTAACTGTCATGCATGATATGCAAAATAAATGCACAA GGGCGGATTTTTTTTTGGTACATCGGAAAATACAAGGGCGGATTTGATTCTCTTTTTCAATTTTCTGTATTTAAAATAAC TGTTTTGAAAAATAATTTAAAAAAGACAGTTCATATAAACGAATTTTTTTCTTTTTCTATTATAAAAATTGGGAAATTGT TTTTAGTACAGAATAGTAATCAAACATACCTCAACTCATTTAGAAGCAACCATTAATTGTAATTGTGTGTGTATCATTTA TGTTTTGCAGGAGGTGTGGACACTCTGCAGGATATTCAAACGTATCACACCTTACAAAAAGTACACTCCAAATTTGAAAG ACTCAGCAGCCGACACCAAACCAAACCCAGAAACTTCTATAGACTCTGACAATTGCAAGTCATTCATGCAACAAGTTGAA ATGAAACCCATTTTTGGATTTGTTGATCAAAATAAACAGTTGCTTCTGGGCCAGTTTGGCTCTGTAGCTCTTCCTGGGGT TCCATCAACATTGCCTTACCCTAGCTCATGGAATCAGAATATTGTTGAGGATACAATATTTGCAAATCAGAACTGGGATG ATCTGAGATCTGCAATTCAGTTTGCCAATGATCCATCCAAGGTTTATGATAATTTCATAGAAACATATATACCACCCTAC TTTTCTTAGGTTGGAGTCAGAAACTAGAATAAACTTAGATTGACTTTGAGTAAACATATATATATAGGAGAGAGTTGTCA CATTATATGTACACATTTCGTACGAGATATATATATCATGTAAAATTTTACATATATCTATCTATGTATAGATGAGAGAC CTTACTAATATAAATATTATTTATAGGCTTAGTTGCACTTTTGGTCCCCTAATTTTATCCTTTATGCGAAAATCGTCCCC CAACTAAGAAATTAGCAAAAAGCATCCCCGAAGTTACCCTCCGTTAACACATTTG
CDS sequence (LotjaGi6g1v0176000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTGGTTCAGTTACACACTCTATCTGAAACTGATGATAAGATGAAGGAAGAAGAAGTTGTGCTTCCTGGGTTTAG ATTTCATCCAACAGATGAAGAGCTTGTTGGGTTTTATCTCAAGAGAAAGGTGGGGAAGAAGCCTCTCCGAATCGATCTCA TCAAACAAGTTGACATCTACAAATACGACCCATGGGATCTTCCCAAAGTGAATTCAGTTGGGGACAAAGAATGGTACTTT TTTTGCAAGAGAGGGAGAAAGTACAGGAACAGCATAAGGCCAAACAGGGTGACAAAGTCTGGGTTCTGGAAAGCCACAGG GATTGACAAGGTCATATATAGTGTTAAAGAACCTCATCATCAAAGCATTGGCCTCAAGAAATCACTTGTCTACTACCGTG GAAGTGCTGGGAAAGGCACCAAAACCGATTGGATGATGCATGAGTTTCGCCTTCCACCAAATAATCCACATGATGCTAAT GCAAGCAATGACGTTCAAGAAGCTGAGGTGTGGACACTCTGCAGGATATTCAAACGTATCACACCTTACAAAAAGTACAC TCCAAATTTGAAAGACTCAGCAGCCGACACCAAACCAAACCCAGAAACTTCTATAGACTCTGACAATTGCAAGTCATTCA TGCAACAAGTTGAAATGAAACCCATTTTTGGATTTGTTGATCAAAATAAACAGTTGCTTCTGGGCCAGTTTGGCTCTGTA GCTCTTCCTGGGGTTCCATCAACATTGCCTTACCCTAGCTCATGGAATCAGAATATTGTTGAGGATACAATATTTGCAAA TCAGAACTGGGATGATCTGAGATCTGCAATTCAGTTTGCCAATGATCCATCCAAGGTTTATGATAATTTCATAGAAACAT ATATACCACCCTACTTTTCTTAG
Protein sequence (LotjaGi6g1v0176000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVVQLHTLSETDDKMKEEEVVLPGFRFHPTDEELVGFYLKRKVGKKPLRIDLIKQVDIYKYDPWDLPKVNSVGDKEWYF FCKRGRKYRNSIRPNRVTKSGFWKATGIDKVIYSVKEPHHQSIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNNPHDAN ASNDVQEAEVWTLCRIFKRITPYKKYTPNLKDSAADTKPNPETSIDSDNCKSFMQQVEMKPIFGFVDQNKQLLLGQFGSV ALPGVPSTLPYPSSWNQNIVEDTIFANQNWDDLRSAIQFANDPSKVYDNFIETYIPPYFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 285 | 273 | 2.4E-121 | – | |
| PANTHER | 13 | 285 | 273 | 2.4E-121 | – | |
| SUPERFAMILY | 15 | 178 | 164 | 2.09E-56 | ||
| ProSiteProfiles | 22 | 179 | 158 | 53.823 | ||
| Pfam | 24 | 151 | 128 | 2.5E-37 | ||
| Gene3D | 31 | 184 | 154 | 5.8E-58 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0176000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…