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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0176000 |
| Transcript ID | LotjaGi6g1v0176000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein, putative; TAIR: AT2G43000.1 NAC domain containing protein 42; Swiss-Prot: sp|Q9SK55|NAC42_ARATH Transcription factor JUNGBRUNNEN 1; TrEMBL-Plants: tr|A0A0R0EYY2|A0A0R0EYY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0176000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:46617507..46620551) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGGGTTGTTTACAGCACAAGAAACTTCTTATCAGTTTGAAAATCTCCAGTACTGCGGCTGGAAACAAATATTTCAAA CAAAAAAGAAGAAGAAAACATGGATGTGGTTCAGTTACACACTCTATCTGAAACTGATGATAAGATGAAGGAAGAAGAAG TTGTGCTTCCTGGGTTTAGATTTCATCCAACAGATGAAGAGCTTGTTGGGTTTTATCTCAAGAGAAAGGTGGGGAAGAAG CCTCTCCGAATCGATCTCATCAAACAAGTTGACATCTACAAATACGACCCATGGGATCTTCCCAGTAAGATCTGCTTCCA CTTATGCTCTCTTGTTAATTGTTATTTTAATTTCTACATACAATACTGAAATCTAAGTGTTTTCTTCTCCTTCTGAACTT AAATTTAATTTTATGAAGAATTTGCTTGATTATATGATTGATTCCAATAATTAAAAACTTGTCTCAGTAATTGATGAAGG CACGATTGTTGTAATTAATTAAATGAAACAATGAGATCGATTTCATGTAAAGAACTCTCCAATGAGTCTCTGTGTTGTGT TATGCAACTTATGCAACACACTACAAATTGAAAAGGAATTGAAGTTAGAGACTTGGAATGCATTTCAGGTCTAGTGCATT TTTCGAACTTTTTTTTATAGCTAGAGCTCAATAATAATTAATTGAGTTCTTATACACGGGAATACAAAACCTTCCGACAC ATTATTTTGCGGTAGTTTTTAACTCCACCAAAGTTAGCTGCTGTTAAAACCCCCGCTAAATGGCATGATCTTGCATATCT AAACATCATTTCCGTAATTATTTCAATGACTTTGAATATTTTATTTATTTATTTATTATTTTCTGGTGATTATGTTTGAA GAAGTGAATTCAGTTGGGGACAAAGAATGGTACTTTTTTTGCAAGAGAGGGAGAAAGTACAGGAACAGCATAAGGCCAAA CAGGGTGACAAAGTCTGGGTTCTGGAAAGCCACAGGGATTGACAAGGTCATATATAGTGTTAAAGAACCTCATCATCAAA GCATTGGCCTCAAGAAATCACTTGTCTACTACCGTGGAAGTGCTGGGAAAGGCACCAAAACCGATTGGATGATGCATGAG TTTCGCCTTCCACCAAATAATCCACATGATGCTAATGCAAGCAATGACGTTCAAGAAGCTGTAAGTCAATAATTACCCGT TTAGATACACATTAAGGATTACTTAATTGTTAGAGTTTATTTACTGCATCTCTTAATATTATATAGATAAGCTTCAATAT AATAAGTCAGTATCTAAACCGGCATATATATATATATATATATATATTGTTCTTATTTGCACCTTGCAACAAGAAATTCA ATGTACGTAGTCCTTAACATATAGCTCTCTATATCATATATTTTATGTACAAATACATCATATGATACAACTCATACAAG TCATGGGATGACATAACACATTCAAATTATTACTGATTGATGATATTCTTGGTCAGAGAAATAAAATATGTTTCATGTTC AAGTAACTAAAAATTTACTATCAATAATGATTGCTTAGACATACGAATATTAATACACTTAATAGATATTTTATCATTTT CTTAAGATTTTTTTTTTATCATATATCACATTTATTATTTTTCTTTCTTCTCTTCATTTCTCACTTTAAATGTCCATTGG ATGTATGTATTATATGTATATTTACAAAACAATTTTCGTTTACTATTCTATGTATAAACTATTCTAGATAGGAAGCATGA CTAGACTACATATTAGGAGGGAAAATTCTAAATACCAATGACACACATTTCATAAAGTTTGATTTTTGTGAAGTTTAATT TGACTTAGATCTTTGACATACATATAGATGCAAACATTCGCCTCCACATGTACGGACAAAATTTTAGACTGCTCTGAAAA GTTGACAAAAGGTAAAATAAAATGATGCAAGCCATGAGTATGAGCTTTTAAGGCTTTTTTTGAATAAAAGATTCTAGATC ACGGCCCTAGATCACTATGAACGGGTTAAAACCAAATTTACCAATGTATGGAACACTTCAATTAAGGAAAAAGTCAATTA GTGGTGTGGTGGTGTGACCCAAAAAGAGAAGGTGGATCAGAGGTAGGAAAAATGGTGGAGAAATTAAGCCCTGAAATGTT ATCAGGTTGAAATAAATTGCATTTATTAGCTTGGTCCATGTCATGAACTTTAAGCATATGAGCCAAGTCTACTCCTTTAA ATACCAACATTTTTGGCTGAAAGTAACTGTCATGCATGATATGCAAAATAAATGCACAAGGGCGGATTTTTTTTTGGTAC ATCGGAAAATACAAGGGCGGATTTGATTCTCTTTTTCAATTTTCTGTATTTAAAATAACTGTTTTGAAAAATAATTTAAA AAAGACAGTTCATATAAACGAATTTTTTTCTTTTTCTATTATAAAAATTGGGAAATTGTTTTTAGTACAGAATAGTAATC AAACATACCTCAACTCATTTAGAAGCAACCATTAATTGTAATTGTGTGTGTATCATTTATGTTTTGCAGGAGGTGTGGAC ACTCTGCAGGATATTCAAACGTATCACACCTTACAAAAAGTACACTCCAAATTTGAAAGACTCAGCAGCCGACACCAAAC CAAACCCAGAAACTTCTATAGACTCTGACAATTGCAAGTCATTCATGCAACAAGTTGAAATGAAACCCATTTTTGGATTT GTTGATCAAAATAAACAGTTGCTTCTGGGCCAGTTTGGCTCTGTAGCTCTTCCTGGGGTTCCATCAACATTGCCTTACCC TAGCTCATGGAATCAGAATATTGTTGAGGATACAATATTTGCAAATCAGAACTGGGATGATCTGAGATCTGCAATTCAGT TTGCCAATGATCCATCCAAGGTTTATGATAATTTCATAGAAACATATATACCACCCTACTTTTCTTAGGTTGGAGTCAGA AACTAGAATAAACTTAGATTGACTTTGAGTAAACATATATATATAGGAGAGAGTTGTCACATTATATGTACACATTTCGT ACGAG
CDS sequence (LotjaGi6g1v0176000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTGGTTCAGTTACACACTCTATCTGAAACTGATGATAAGATGAAGGAAGAAGAAGTTGTGCTTCCTGGGTTTAG ATTTCATCCAACAGATGAAGAGCTTGTTGGGTTTTATCTCAAGAGAAAGGTGGGGAAGAAGCCTCTCCGAATCGATCTCA TCAAACAAGTTGACATCTACAAATACGACCCATGGGATCTTCCCATGAATTCAGTTGGGGACAAAGAATGGTACTTTTTT TGCAAGAGAGGGAGAAAGTACAGGAACAGCATAAGGCCAAACAGGGTGACAAAGTCTGGGTTCTGGAAAGCCACAGGGAT TGACAAGGTCATATATAGTGTTAAAGAACCTCATCATCAAAGCATTGGCCTCAAGAAATCACTTGTCTACTACCGTGGAA GTGCTGGGAAAGGCACCAAAACCGATTGGATGATGCATGAGTTTCGCCTTCCACCAAATAATCCACATGATGCTAATGCA AGCAATGACGTTCAAGAAGCTGAGGTGTGGACACTCTGCAGGATATTCAAACGTATCACACCTTACAAAAAGTACACTCC AAATTTGAAAGACTCAGCAGCCGACACCAAACCAAACCCAGAAACTTCTATAGACTCTGACAATTGCAAGTCATTCATGC AACAAGTTGAAATGAAACCCATTTTTGGATTTGTTGATCAAAATAAACAGTTGCTTCTGGGCCAGTTTGGCTCTGTAGCT CTTCCTGGGGTTCCATCAACATTGCCTTACCCTAGCTCATGGAATCAGAATATTGTTGAGGATACAATATTTGCAAATCA GAACTGGGATGATCTGAGATCTGCAATTCAGTTTGCCAATGATCCATCCAAGGTTTATGATAATTTCATAGAAACATATA TACCACCCTACTTTTCTTAG
Protein sequence (LotjaGi6g1v0176000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVVQLHTLSETDDKMKEEEVVLPGFRFHPTDEELVGFYLKRKVGKKPLRIDLIKQVDIYKYDPWDLPMNSVGDKEWYFF CKRGRKYRNSIRPNRVTKSGFWKATGIDKVIYSVKEPHHQSIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNNPHDANA SNDVQEAEVWTLCRIFKRITPYKKYTPNLKDSAADTKPNPETSIDSDNCKSFMQQVEMKPIFGFVDQNKQLLLGQFGSVA LPGVPSTLPYPSSWNQNIVEDTIFANQNWDDLRSAIQFANDPSKVYDNFIETYIPPYFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 284 | 272 | 5.1E-118 | – | |
| PANTHER | 13 | 284 | 272 | 5.1E-118 | – | |
| SUPERFAMILY | 15 | 177 | 163 | 1.31E-54 | ||
| ProSiteProfiles | 22 | 178 | 157 | 53.373 | ||
| Pfam | 24 | 150 | 127 | 9.5E-36 | ||
| Gene3D | 31 | 183 | 153 | 7.6E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0176000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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