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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0178800 |
| Transcript ID | LotjaGi6g1v0178800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome c oxidase subunit 3; TAIR: AT5G01075.1 Glycosyl hydrolase family 35 protein; Swiss-Prot: sp|O61397|GALT7_CAEEL Probable N-acetylgalactosaminyltransferase 7; TrEMBL-Plants: tr|C6T302|C6T302_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0178800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47060412..47061607) extracted from Lotus japonicus Gifu genome v1.2.
CAGTGATAAAGTATTTAATGCTTGTAATGGAATGCGAGCCCTTTGCAACAACAACAAATGAGTTTTGTTTGGGAAGCTCA TCTTCTTCCTCATCCTCTTCAACTTTTGCTTTCCTGCTTTTGAGGCAGACTTTGGTTTCAACAGAACAGAAGCAGCTTCT TGTTATTGTGATAACACCACTACAGTCACTCCAACACAAGTGAGGTTTGGTTTTGGTCATATAACTGATAAACAACAATT GACATCATGAAGGTTTCTGGCTTTTGTGTCATATTTTTGGCTGCTTTCATTCTCCTTAACTTCTTAAGTCCCACTCTTGT CTCCTGGTTTCCTGGTAAAATATCTTGTATCCATTTTGCAATTTTTTTTGTTCAGTAGAAAAAATGATCTCTTGCCATAT TTTACAATTTTAATGCCTTCCCAATCCCAGATTTTGTTGCTACCACCACCAGCTCAGGTGATAAAACAACACTGATTGCA GTAAGGAGGAAACTGAAGGTATGATGCTTTAAAAAGTCTATGGACTTGAAAAAAAAAAAAAAAAACAATAAACATGACAA TTGATTACAGTTAAAATTGCAGTATCTTTTAATTGTTGTTTGCCATGAAATTAATTTCAGGAAAATGGAAATGGTATTAG AAGCAACAACAAGGATGATACTGGTCACATGACTCTGGATGATTACCATCCAATTCATCCACCACCAGGTTCAGATCCAG ATGAGATTTTGCGTCCACGTCCTGTTGAGCATGGAAGTCCTCTTAATCCATATATGCCAAAACCTCCTCCTCCTCCTAGT AATCCAGAGTAACTCTCATGCTCAAAATATAGCTAGAAATGCTACTAACATGAAATCTTTTGCTCTGTAATCCCTTTTTT CTCATATGGGAAAAACAATACCAAATATAAATTTGTCTTTTGGCATCCTATAAAGTGGAGAATGTGCTAATAGAATTTGC TCCATCATAGTAACTATGTCAAGCAATGGTTCCTTCTTTGGAATTCAATCATTAGTTCAATCTGAATTGACTAATTTTTA TGTTGATCTGAGATCTATGCAACTATGCAATTATTCATGTTAAGAACTAAGTTGAGATTGTAAATCTTCAATGCAATCAA ACTGTGAGCTGCTCCAATTTGAGGAATATCTCATGAAATAAAAAACTACAATTTATTTTTGCAACTTATATTGCAC
CDS sequence (LotjaGi6g1v0178800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGTTTCTGGCTTTTGTGTCATATTTTTGGCTGCTTTCATTCTCCTTAACTTCTTAAGTCCCACTCTTGTCTCCTG GTTTCCTGATTTTGTTGCTACCACCACCAGCTCAGGTGATAAAACAACACTGATTGCAGTAAGGAGGAAACTGAAGGAAA ATGGAAATGGTATTAGAAGCAACAACAAGGATGATACTGGTCACATGACTCTGGATGATTACCATCCAATTCATCCACCA CCAGGTTCAGATCCAGATGAGATTTTGCGTCCACGTCCTGTTGAGCATGGAAGTCCTCTTAATCCATATATGCCAAAACC TCCTCCTCCTCCTAGTAATCCAGAGTAA
Protein sequence (LotjaGi6g1v0178800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVSGFCVIFLAAFILLNFLSPTLVSWFPDFVATTTSSGDKTTLIAVRRKLKENGNGIRSNNKDDTGHMTLDDYHPIHPP PGSDPDEILRPRPVEHGSPLNPYMPKPPPPPSNPE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 114 | 114 | 4.5E-25 | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 115 | 90 | - | – | |
| MobiDBLite | 53 | 115 | 63 | - | – | |
| MobiDBLite | 53 | 72 | 20 | - | – | |
| MobiDBLite | 98 | 115 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0178800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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