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LotjaGi6g1v0179000.1

Overview

Field Value
Gene ID LotjaGi6g1v0179000
Transcript ID LotjaGi6g1v0179000.1
Lotus japonicus genome version Gifu v1.2
Description Phospholipase A2; TAIR: AT4G29070.1 Phospholipase A2 family protein; Swiss-Prot: sp|Q9XG81|PLA22_ORYSJ Probable phospholipase A2 homolog 2; TrEMBL-Plants: tr|A0A072THL8|A0A072THL8_MEDTR Phospholipase A2; Found in the gene: LotjaGi6g1v0179000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:47076923..47080279) extracted from Lotus japonicus Gifu genome v1.2.

TGAAAATTGGTGGCCAGCATCATTTTCCTTGCAAACGTAAGACAATCCCACACCTCTCTCTCTCTCTCTCTCTCTCCACA CTCTTCTTCTCTCTATCTCCATTTGAACGTGTTCGCCTCAAAAGATGATGAACCACAACGAGTTAAAGTAAGTTTATCAT AATTTGAGCTCAATTTTCCTTCCAATCTTAAGGTTTTTTCATTACCATTATCATTATTATTGTAATTTCCTCATGGGTTT TGTGTATAACGCGAGAAAATAGAAAGAACCCCAATTCTTGTGTTTTATTTTTTATTTTTATGTGCAATATTGATTGAAGT GCTTTTCTTCAAATGGGTATGTCAAAGTTTTAAGCTTTAATGTTCTGTGTTTATTTTCAGTTTATGCACTTCCCTGAACT GTTGAATGTTGTTTGATCAATGATCAAACTGTGTATTATTCAAATTTGGTGACTTGGCTATGGAATGATCCAAGAAGAGT TGGGATGTGTTAATTTGGCATAGCTTTTTAAGAAAAAAATGTTTAGCTTTTTTCTTCAAATATGAACAATTTTTTTAATC TGGGGTAGCTTTTTTTTTCTTACTTTTTTTGTGTTAGGAAAAGGTTTTAACTGTTTTTGTTGTTTTCTGTTGGCAGGTTA AAACTATAGGTGGTTTTGTTGTGCCTATCTATATAATTTGGTGAAACAAGACTTCTCCACCATGAACTTGGGGTTTCTGC TTAACATCCCTTGGGTTAAAGCTCAGTTGAATACAGATTCGGTGACGAATTCGGTTCCTACCAAAGCTTTTACTGAACAA GCAGTTCATACCACAGCTTTTACTGAACAAGCAGTTCCTATCAAAGCTTTTACTGAACAAGTTAAACAAGAATCTGGTAA TGATCCCAAATTGTTTGGGTGGCCCATGCCCTTCCTTTCATTGTTTCCTTGGGCAAATAGTGCTGGAGATAAGTTTCAAA GACCATCTACTATCAATAAAGAGTTGAGGAGACAAGCACAAACTCGTGGGGATGTCGTAGCGAAAGATACTGGGGCTACC CCTTTACGCTTTAAGCCATATGTTTGTAAGGTTCCGTGGCATACTGGAGCTAGAGCATTTCTTTCTCAGTTGTTCCCTAG ATATGGGCATTACTGTGGCCCAAACTGGTCAAGTGGGAAAGATGGAGGGTCTCTTGTTTGGGACAAGCGACCAATTGATT GGTTGGATTTCTGCTGTTATTGTCATGATATAGGGTATGATACTCATGATCAAGCCAAGCTTCTGAAGGCTGATTTAGCC TTTCTTGAGTGCTTGGAGAAGCAGCATATGAGTACCAAAGGAGACCCTCATGTTGCTTATCTTTACAAGACATTATGCAC TAATGGTATGCCTTGCATTAAATAATGTTATTCCTTTAGAGTGTGTTTGGATAAAGTAGTTTTTAGAGGTAATGTATTTT GAGAAGGTAATTAAAATGATTTGTCATAAAGTAAATTGTTTGGATATCAAGTCTGTGGAATTTTAGAAATGCTGGGGTTT TAGTCAAGTATTTTGTATAACTAACTGTATGGAATTTGAAATACCCTCTTGTAGTAAGGAAATTGTGAAATCCCTTGCTG GAGATGTACAATGTGTCACTTTAAACCTCAGTTCTCTTGCTTAACGTATTGTTTTTTTTTTGTTACAGCTTAAATGCACC ATCCAAACACACTGTTAAGGATCAATAGTTTTATGCTTTGGTGCTATCAATGGGAAGATGAATTGCTTTTCAGCATGTGT ACTGACTTATTTTCCTTCTGACATTGCAGGTCTCAAGAATTTTCTGATACCTTATAGAAGGCAACTTGTGAGCTTACAAC AGTACTCTGGGATACCTTTGGTTCAGTTTGGATGGCTAAGCAATTTGAGATGGAAAAGTTGGAACTTTCAGAAAGGGAGG GGGTGGTGGGAGGTACAAAGTCACAAATTGTGAATTGCATCCACTTTAGAAAGTGCTTGGCCTTGTTTTATTAACATTTA ACACTATGTTTATTAGGTTATGCATCTTATAACCTTTTGTATATACCATATCGTGCCCATAGCTTGTTTTGCGAAGTGCA ACCTTTGGCCTTGCTTGACATAATCTCTGTTAACAAGACAGTCTGTTTATATGATCCTGATGCCGCATTATAATTTGATT CTCACAAAAATCATTAGTTTGTGACTTACTACTTTGTTCACATATATTTTCAGCCCAGTGCTTATATAATGTCTAGTTTG ATGCTGATATACAGTCAATCCTTTTTCTGATGATAGGGTTAAGAGCAGCCTAGTAAATTTATAGGTCAAACTATTGAGAA GGATTTGAAATTAAATGATCTGTAATGTGTATTTTGTTCATTGTTCAGAAAAGTATAACAAAACATACTACTTTTTTCTT TCTGCAAGCACTATCTAGAGCTAAACTTAGTCAAATTAGGTGATCTTGGTCTTGTTAGAGAGATAACCAAGAGGTGTACA ACTCTTATGCAGAATTTGAGACCTGAATCAATCTGCTTATGAGTGTAAGTTCCTTTGCAAGTTGGCGATATGGTGTTATC CTGATAAGCTTACCTCTGCTCAATAAATTTGTTTATAACTAGATTTACAACCGTCCAAATCACAAGAATATGACAAATTA GAGCTAAAATCCATGGCTACATCTTGTGAGATACCTTGTCCTAGCTTTTTGATGTTATGTGGTCAAGATTACTGCCAGGC ATGACTTAGTCAATTTGTCCAAACGGGACCGCCAAACACAGCAGCAGCGTCGTCGCCGCTGATGAGTCCTCCTCTTCATC CTCACTCAACAACGTATCGACCACCCCATCTTATGTGAACTCGTCGAGCAGTCCCGCGAAAGTAGTAAATAATGTAAATG GAATTATCAATATAGCTTTTCAAATGTAAATAATGTGTGCCATTTAGTCATTTACATTAGATTTAATAAAAACTTATGAC TGTTATCAATGCTAAGATCATACAACCGTAGCTTTTGCTTAACAATGCTAAGATCATGCAGTGACTCCAAGCCAGTAGCT TTTCCTTTAAACCCACATTTTCGGTCACAGAAAATTTCAATAAAATATTAAATAGACACATACAATTAGACTTAGATTCT TACATAAATCAAGTCAGTAGAATTGTCTTAACATATCATACTCACAGACTCGCAGTATCATAATATATCATATTTACAGT CTCAACATGCTAAAATAGTCTTAGATAGAAAGAAACAAGAAAAGCCAAGAAGACAAGAAGTTTAGCACGAAGACTAACAA CTTAACAAATGACAAAACAGACAATTGGAAAAATTCCTACAATGATTCATCTCCAATTTTCAATCATTAGTAGTATA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0179000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACTTGGGGTTTCTGCTTAACATCCCTTGGGTTAAAGCTCAGTTGAATACAGATTCGGTGACGAATTCGGTTCCTAC CAAAGCTTTTACTGAACAAGCAGTTCATACCACAGCTTTTACTGAACAAGCAGTTCCTATCAAAGCTTTTACTGAACAAG TTAAACAAGAATCTGGTAATGATCCCAAATTGTTTGGGTGGCCCATGCCCTTCCTTTCATTGTTTCCTTGGGCAAATAGT GCTGGAGATAAGTTTCAAAGACCATCTACTATCAATAAAGAGTTGAGGAGACAAGCACAAACTCGTGGGGATGTCGTAGC GAAAGATACTGGGGCTACCCCTTTACGCTTTAAGCCATATGTTTGTAAGGTTCCGTGGCATACTGGAGCTAGAGCATTTC TTTCTCAGTTGTTCCCTAGATATGGGCATTACTGTGGCCCAAACTGGTCAAGTGGGAAAGATGGAGGGTCTCTTGTTTGG GACAAGCGACCAATTGATTGGTTGGATTTCTGCTGTTATTGTCATGATATAGGGTATGATACTCATGATCAAGCCAAGCT TCTGAAGGCTGATTTAGCCTTTCTTGAGTGCTTGGAGAAGCAGCATATGAGTACCAAAGGAGACCCTCATGTTGCTTATC TTTACAAGACATTATGCACTAATGGTCTCAAGAATTTTCTGATACCTTATAGAAGGCAACTTGTGAGCTTACAACAGTAC TCTGGGATACCTTTGGTTCAGTTTGGATGGCTAAGCAATTTGAGATGGAAAAGTTGGAACTTTCAGAAAGGGAGGGGGTG GTGGGAGGTACAAAGTCACAAATTGTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0179000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNLGFLLNIPWVKAQLNTDSVTNSVPTKAFTEQAVHTTAFTEQAVPIKAFTEQVKQESGNDPKLFGWPMPFLSLFPWANS AGDKFQRPSTINKELRRQAQTRGDVVAKDTGATPLRFKPYVCKVPWHTGARAFLSQLFPRYGHYCGPNWSSGKDGGSLVW DKRPIDWLDFCCYCHDIGYDTHDQAKLLKADLAFLECLEKQHMSTKGDPHVAYLYKTLCTNGLKNFLIPYRRQLVSLQQY SGIPLVQFGWLSNLRWKSWNFQKGRGWWEVQSHKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR37246
1 263 263 1.3E-110 –
Gene3D
G3DSA:1.20.90.10
120 226 107 1.3E-18
IPR036444
SUPERFAMILY
SSF48619
127 201 75 1.57E-8
IPR036444

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004623
Molecular function Phospholipase A2 activity Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate.
Subterm of
GO:0006644
Biological process Phospholipid metabolic process The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester.
Subterm of
GO:0050482
Biological process Arachidonic acid secretion The controlled release of arachidonic acid from a cell or a tissue.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0179000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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