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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0180900 |
Transcript ID | LotjaGi6g1v0180900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF4228 domain protein; TAIR: AT5G12340.1 DUF4228 domain protein; Swiss-Prot: sp|P71037|YWNB_BACSU Uncharacterized protein YwnB; TrEMBL-Plants: tr|I1JIY1|I1JIY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0180900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47297740..47299041) extracted from Lotus japonicus Gifu genome v1.2.
GTGGAAGGTCAAGGTGTGCTTAACCTTGTGGTACGATTTGTATTTTGTATTTTTGCAAGCACAACATAAGAGTGACCCCA AGAAAGAGAAGAAAGACGTTCAAAGCCGGCATGGCTGACCAAACTTCACCGACCGAAAAAACAACTAACAACAACTCTAT AGACTCCATCCAAGTCAAAATTTCCTCCCAATATTATATAACCACCATATTCTTCACCTTCTCCACCCAAACACAACAAC AGCAACCAACACCTCTTCCCCTCATCCATTCAATTCAAATCCTCAAATGGGGAATGCAGTGGTCACTCCCTGCTTTCATC AAGGCAAAAGACTATCATCATCGTCCTCGTCATCGTCGTTGTTGCCGTCGTCGCCTGTGAAGCTTATCTTCTGGGAAGGC AGCACAAGAATCCTCAACGGTGATGAGCACGTGGCCGGAGAGATCATGTTCGAGTTCCCGGACACCATGGTTTGCCATGC AGACTCCTTCTTCATCGGACACCCTATCCCTTTGTTATCCTTAGATGATGATCTCAACCCGGGACAAGCCTACTTTGTTC TCCCCGTTAACAGTTTCTCAGCTTGCAAAACCCTATCCGTGTCTTCACTCTTATCTCTGGGATCACACCATCAAAATGGT AAAAATAGCAATTTCAAATTTGGAGAGTCTTGCCCTTTTGAGTACTTGAAGGATGCTAGTGGGAGGGTATTGATCAAGGT CATGCCGGAGTTTATTACAAGGCTAATCAATGGAGGTAATAAAGGGGGTGGTGGTGGTGGTTGTTGCTCCGTCGACAGCG GCAACAACAACTTCCTTTGCAGCACTCCTGAGTTGAAGAAACATTATCAACAGCTTGTGAGGTCTAAGGATCAGGTGTGG TCGCCAAAGCTTGAGACTATTTCGGAGTACAAGGCTAGGTTTTCACCGGGCAGATTTATTGGCTTGGAACGGAAACAAAA GGAAAAGGCAGGGGCTGTGGTGGCTAGATAGTTTAATATATAAAATTTTGGAGTGGGTTTGCACTTGGAATTTGTAAACT GATAGATCGTCGTGTATACACATTAGTTGATAGTATAAGCTCATCTTTGGTCAGGATCAATTTTGAAATTCAGAAACTAC TCATAAAAGTTTCTCTTCAAAATTCATTCTACCTTCTCATGAATCAATTATAGAAATGGAAGTGTTTTCAAACATGCTTA TGGTCTCAACATAGGACATTTTTCTTCCTAGTTCATAATTCTGTGGAAATGATATGATGAAAATTGTTTAAAGAGTAATC AAATTGACAGACTAAAAATGAA
CDS sequence (LotjaGi6g1v0180900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATGCAGTGGTCACTCCCTGCTTTCATCAAGGCAAAAGACTATCATCATCGTCCTCGTCATCGTCGTTGTTGCC GTCGTCGCCTGTGAAGCTTATCTTCTGGGAAGGCAGCACAAGAATCCTCAACGGTGATGAGCACGTGGCCGGAGAGATCA TGTTCGAGTTCCCGGACACCATGGTTTGCCATGCAGACTCCTTCTTCATCGGACACCCTATCCCTTTGTTATCCTTAGAT GATGATCTCAACCCGGGACAAGCCTACTTTGTTCTCCCCGTTAACAGTTTCTCAGCTTGCAAAACCCTATCCGTGTCTTC ACTCTTATCTCTGGGATCACACCATCAAAATGGTAAAAATAGCAATTTCAAATTTGGAGAGTCTTGCCCTTTTGAGTACT TGAAGGATGCTAGTGGGAGGGTATTGATCAAGGTCATGCCGGAGTTTATTACAAGGCTAATCAATGGAGGTAATAAAGGG GGTGGTGGTGGTGGTTGTTGCTCCGTCGACAGCGGCAACAACAACTTCCTTTGCAGCACTCCTGAGTTGAAGAAACATTA TCAACAGCTTGTGAGGTCTAAGGATCAGGTGTGGTCGCCAAAGCTTGAGACTATTTCGGAGTACAAGGCTAGGTTTTCAC CGGGCAGATTTATTGGCTTGGAACGGAAACAAAAGGAAAAGGCAGGGGCTGTGGTGGCTAGATAG
Protein sequence (LotjaGi6g1v0180900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNAVVTPCFHQGKRLSSSSSSSSLLPSSPVKLIFWEGSTRILNGDEHVAGEIMFEFPDTMVCHADSFFIGHPIPLLSLD DDLNPGQAYFVLPVNSFSACKTLSVSSLLSLGSHHQNGKNSNFKFGESCPFEYLKDASGRVLIKVMPEFITRLINGGNKG GGGGGCCSVDSGNNNFLCSTPELKKHYQQLVRSKDQVWSPKLETISEYKARFSPGRFIGLERKQKEKAGAVVAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 217 | 217 | 9.9E-92 | – | |
PANTHER | 1 | 217 | 217 | 9.9E-92 | – | |
Pfam | 1 | 207 | 207 | 2.2E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0180900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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