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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0183800 |
| Transcript ID | LotjaGi6g1v0183800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prefoldin subunit, putative; TAIR: AT1G26660.1 Prefoldin chaperone subunit family protein; Swiss-Prot: sp|Q54ND3|UXT_DICDI Protein UXT homolog; TrEMBL-Plants: tr|A0A0R0L2B8|A0A0R0L2B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0183800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47688066..47689199) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTACCTTACGCCACGAAAAAGTTCAAAAATTTGAAGAATTTGTTGATAAGCGCTTGAAACCTGATATTCTTCATGC TATTGCTCAGAGGTAAACTGTTCACTCCTCTGGATTTTACATCAGGTTTCACAATCTTTACATATTTATTTTTCTAATCT CTTTATATTGCAGGGACAAGGTCTTTGAACAACAGAAAACTTTGTATCCTTTTTCACTCTTTTATCATATAGACTTATAT TTTTTTTTAAAGAACACATTTCAAAATATATCTGATTCATGTGAAACATGGTATGTTACTTAAAGTCCGCTTTATCGATA TTGCATTCAATGAAGGACCATTGTTATGCTTGACTTGTACCCCCTCAGTGCGGATTTGCGAAAAAACATTGAAAACCTAG AGAAGAATAGTGTAACCAGTCTAAGAACTTTGGTCAATCTTGGGTCTGAGGTATACCTGCAGGCAGAAGTGTAAGTAATC AACCATTCTTCATGATTTCTTTTGATTGTTTTAAAGCACATTTGGATAATGTATATTATCAGTTTATCACCAGTATGTGT GAACCATGTTGTTCCTTCATCATATGATCACTTTTATAATCATTAATCACCACCATTTTATACAAATAATCTTTTAGCAT CCTTCTTCACCATGTTATCTAACTAAGATTTGTGCTATATGGCTCTAATGTATACTCTCCCCTCGTCCCCCCTCCAGGAT ACAATTGGTATATTGAAGTTTAACCCTAGATCCTCCGACAAATTAATTGCTAGTGCTTTTCATCCATAGACTTATTATTA GATCTTCCTTGTTTGGCCTTTAGTTCTGTGATATATACATCTCTTTCATATTTTTTCTACTTCATCAAAACTTTACAGGC CCAATACAGAACACATATTTGTGGATGTAGGATTGGGATTCCATGTGGAGTTTACTTGGTCTGAAGCTTTGAAATACATA GAAAAAAGGGAAGAAAAGATAGCCAGGTATAAGCTTTTCATTTAACATATCTTGCTTACTTTAAACTTGAAAGATTAGTC TGTTTATTATGGCCTTCCAGGTCTTCTATTTTGAAGTTTATGCAACAGTATGACTTGCTTCAATTATTCAAATGACATCG AAATTGACTTTTAA
CDS sequence (LotjaGi6g1v0183800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACCTTACGCCACGAAAAAGTTCAAAAATTTGAAGAATTTGTTGATAAGCGCTTGAAACCTGATATTCTTCATGC TATTGCTCAGAGGGACAAGGTCTTTGAACAACAGAAAACTTTTGCGGATTTGCGAAAAAACATTGAAAACCTAGAGAAGA ATAGTGTAACCAGTCTAAGAACTTTGGTCAATCTTGGGTCTGAGGTATACCTGCAGGCAGAAGTGCCCAATACAGAACAC ATATTTGTGGATGTAGGATTGGGATTCCATGTGGAGTTTACTTGGTCTGAAGCTTTGAAATACATAGAAAAAAGGGAAGA AAAGATAGCCAGTTTATGCAACAGTATGACTTGCTTCAATTATTCAAATGACATCGAAATTGACTTTTAA
Protein sequence (LotjaGi6g1v0183800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTLRHEKVQKFEEFVDKRLKPDILHAIAQRDKVFEQQKTFADLRKNIENLEKNSVTSLRTLVNLGSEVYLQAEVPNTEH IFVDVGLGFHVEFTWSEALKYIEKREEKIASLCNSMTCFNYSNDIEIDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 122 | 120 | 4.3E-60 | – | |
| PANTHER | 3 | 122 | 120 | 4.3E-60 | – | |
| Gene3D | 6 | 119 | 114 | 3.2E-16 | ||
| Pfam | 26 | 113 | 88 | 2.5E-18 | ||
| TIGRFAM | 30 | 116 | 87 | 2.3E-15 | ||
| Coils | 34 | 54 | 21 | - | – | |
| SUPERFAMILY | 36 | 110 | 75 | 4.97E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Cellular component | Prefoldin complex | A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi6g1v0183800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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