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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0184600 |
| Transcript ID | LotjaGi6g1v0184600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT2G43010.2 phytochrome interacting factor 4; Swiss-Prot: sp|Q8W2F3|PIF4_ARATH Transcription factor PIF4; TrEMBL-Plants: tr|A0A0B2R333|A0A0B2R333_GLYSO Transcription factor PIF5; Found in the gene: LotjaGi6g1v0184600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47884570..47889916) extracted from Lotus japonicus Gifu genome v1.2.
TCACATTTATAATGCTAGAAACACACGAAAATATAAGAAAATGAATAAGATATATGATAGATGATGTTATAGAAGAAAAA TGTATAAAAAGGAAGTAGATAAAAATGAGATGAAAGAAAAAATGTTCTATCAAGATTCAAAACCATTCTCCATGAAGCCA TGTTTTTATCATTGTTCAGAAACTCAATCACCATTTTACTATGGGATTATTGCCCCCTTTCTCTCTCTCTTTGCTGATGT CACTTTCTTTCTTTCTTGTTGTTAAAAACTCCTCTTCATGCTTTGTTTTCTAACTTCCCTGAGCACAAGGACACACCCAG AGAAAGTTAAAGACAGAGAAAGAGGAACAAACTAGGAGCTTCAGTTTCTAGCTTCCAGCTACCTTCAAGTTCAACAAGAT TAAAAAAAAACTATATTTTCCTTGGATCAGGTAAGGTTTCTTTTCTGCTGCGCTTATCTTATTGTGATTGTGAAAATTAA TGACACTAAAATTATGGGGTTGTCTTTTATGCTTGAAAGAATAATTTTTCATTCTTTTCTTATGTTTTCATTTTTCAAAG TAATAGTCTTCATTGATTTGTGAATAATTTCCTTGTTTCTTTGCTTCCCATTTGTTGGGAATCTGTTTTCTGTGTTTGTG TTTGTTTGTTTGAGTCTTCCAATGTTATTAAAGCTTTCTGTAAGCTGGCTGTCTCAAATTTTTTGCTCTATTTGTTTAGT TTAATGTTTTGTATTTACTCTTGTATTTTATTGTTTTACTTTCTCTGTGCTTGTGATTGTACTTTCAACTGTAACTGAGA GTTGAGCTTTCCATTTTGGGACTCTTGGAATGAGAACTTTTGATGCTTTATTTATTCACACAATCCAGAATGGCAAATAA ACTACTCATGGTTCCATTTCATTGGTTGGCTCTCTATTCTGCTTGTAAAGTTCCACACACATGACCCAAACTCCCAAATC CTTTCTTTTTTATTCCTTTCTTCCAATTAAAAAACTTGGTTTATTCCTATTTGATTATGCAGCTTGCCTTTTAAAATCTA TACAGATTATTTTAGAAGTTGCTAATAGTTATTCAAAACCAAAAGTTGTTTTTTTATGCTTATTTGATTATTTTAAAATC TAAATTCTTTTCTTTTTGTGTAACCAGATAACTGATTTGGTTAGCCATGAACAACAGTGCTCCTGATTGGAATTTTGGGA GTGATACCTGTCTCACCAACCAAAAGAAACCCATAGGGTATGTTAAATTTATGTCTGTCAAAGCAGAATACTATTCTTGT TCAAATTAAGTGCATGGTTGAAAACTTGTCCAAAGGACTTGGTGAAGCGAAAAATCATGATGGACATAAGCAAAAGTCTT GCTTTTGTCCATCATGATTTTTGCTTAAACGTGATTTTCGAACGAGTTTCCAAATATGCCAAAAGTTTGCTTCAATTATA GTTATCCATGTGGTCACTTCTTCAGGATGGACAATGATCTTGTGGAGATCCTTTGGCAAAATGGCCAGCTAGTATTGCAG AGCCAAGCACATAAGAAATCAGTTGTGAATTCTATCGCCTCAAGACAGGTTAACAAAAAATTTCAACCAACATTGAGGAC TAGTGATCCATTTGGGATGATCCAAGATGATGAGACAATCTCATGGATCCAATACCCTCCGGACCATTCGCTGGAACAAG AATTATGTTCAGAACTTTTATCTGAACTGCCTCTCTGTGAAGTTGAGTCTTACAGGCAAATCAGGCAATTTGGAGATGCA AAGTTTTCCAAATTGGATGATTCCAGTATGAAACCCTCCTGTGTTCAGGAATTCTCAGGAATTCCTATGCCTGCTCCAAA ATTTCATGCTTCTGATTCATATCAGAAAAACAAGGTCCAAAACTTTCCCCACTTTTCAGCACTCCCTATTGTTTCTACAG CATCTGCTAATGCACATTTGAGAGACAAAATTGCTGGTAATAATGTGTCAAAAGGTGAGATTAGAGAGTGCTCAGTGATG ACGGTTGGTTCGAGTCACTGCGGAAGCAATCACATCCCTCAAGATCCTGATATAAGCAGGGCTTCAAGCAATGGTGCTTG GACTACTACTTTATCTGCTGAGCCTGAAGCTGGTAGAGATGATGTCCATAGAACAATTCCGCAGTGTGAGAAAGGAAAAC CGGAGATGCTTGAACCAACTATGACTTCATCTTCAGGGGGCTCAGGCGGTAGTAGTCTTGGAAAAACTTGTTCCCTATCT ACAAGAAGCCAGGGCGAAAAAAGGAAAGGGATTGATGTGGAAGAACAAAGTGAGGTAAAGCCTCCCTCTCTTTATTTGCA GTCATGATTAGATACTTTTCTCTTTGGCACACTGAGATATTCCTTCCTTTATGTATGTGCAATAGGACACAGAACTCAAA TCAGCTGTTGGAAATAAAGCATCTCGGCGAGCAGCGTCAGCGCGAAGGAACCGTGCTGCTGAAGTGCATAATTTGTCAGA AAGGGTGGGGGTTTGGACACTCTTTTTGTTAAGACTGAAATTTTTGTAAACTTTACTCTTATTAGTGGAAGTGTTGTTTT ATTGATGCAGAGAAGAAGAGATAGGATTAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGTAGCAAGGTTT GTTATCATAATGCATGTTGACTCAGTTGTGATAATTAGAACAAAACAATTGGACAAGTTTAGAATTTTTTTTCTCTCCAT TTTATAAGATTGAATCATAGTGGTTTAAAAATTAAGAGATGCATCATGTATGTGCAGACAGATAAAGCATCAATGCTAGA AGAGGCGATCGAATACTTGAAATCACTTCAGTTACAGCTTCAGGTACATGATCTAAATAATATCTTGCATATGAAAATTG TTTCACATAGCTAACAATTGAAATAACTAATTCTGTTCTTGCTGCTAGGTAATGTGGATGGGAACTGGCATGACACCAAT GATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGAATGGGAATGGCTACACCTCCTTTTCCTCCAATTCACAACC CAATGCAGTTACCAAGAGGGCCACTCGATCAATCCATAGCAGCATCTCAGACCCCAAACCAGTCATTAATGTCCCCAAAT CCTATTTTGGGTGCCTTTAACTACCAGAATCAGATGCAAAATCCAGCAATTTCAGAGCAATATGCGCGTTACATGGGCTA TCATCTTATGCAAAATGCCTCTCAGGTAAGTAACTGGTTTCTTTCAAAAGGAACTTAGTTTCAGGTATTCCCTTTATTAA AACTCCTTGTGCCCTCTTGATGAGTTTCTCATAGTTTGTATACTGAAATTAATTTACCTTGTGTGTTGGTTTTTTCTTGC AGCCAATGAATATGTATAGATATGGTCCCCAGTCAGTGCAACACAGCCAAACAATGATTCCACCCAGCAATAGCAGTGGA TCCATGAGTGGAGCAGCTAGCATTGATGATCCTGTGAGTGGAAAAATTGGTAAGCCTTTTACATACTTTTTCTCCTTTCC TTGACTTAGACCCTGTTTGGATCCAGACAAAAGAGCACTTATTGAAGCTCAATTAGGAACAAAAATACTGGATAAGCTCC AATAATTTCTCTTTGGTCCGCATTCAAACAAGTTCTTACAATAAAATGAGGATATCGTATCAATTATATGGAGAAGTTCA CCTTTTGCTTGTGGGTAAACAGGTGCATGTCACCATGTGGAACGCTGATGAATCCTTTTCTTCAACAATGACTGGTTCTT TGACTAGGGTAAGAACTAAATTTCTTCTAATTATCCTTTCTCTAGAGTAGAGGGCAAACCTTGGCGCAACGGTAAGGTTG TTTCCATGTGACTTTGCGGTCACAAGTTCGAGTCCTGCACGAATTGTTAACATTTTGCTCTGCTATATTCCTATTATATG ACAAATATAGATCATCATTACATGTTTCACATTGCATAGAACTTCTACTGATTGTCTAATTTCAGTACTATGTTAACACA AATTAGTCAAGACCATTTCATGGCATTCTTCAGTTTTATATTTTATTGATTCTACCGATTTATAATATAGATGCAAAAAA CTTCTATTATCTTGTGTATTCTTCTCATACTATAACTTTCATTGATATTCTTAGTTTCCAATGTTCACAGGTTAGTTAGT TAAGAAGCATGCTTACAAGAACCTATGGTGTATCTCACAAGATGATAGAACCCTTCGTATGTTTTCAGAGTATGTCTCCC AGCTCAACTATATATTGTTACTTGTATATAAATTCATCAGTGACTGTACAATATTGTCCAAACAAAAACAAAATTAACAA CAATAAAAAGGAGGTAAAGTGAAAATAAAAGACTATGTGACATCTAGAGGTGAATACATAAATAAGAATTGGGGATGACT TAGTCAACTAGATTAGGTCACATTTTTTACCTTATTTGGATAACCAAAGTACCTGATTTTGCAAAAAGAAATATATTTGA AAAGTTTAGGTGATGCATGATTAATTGCTCCTTTCATTCTCTCAACTAGAAATCACATCCTCAACATATTTTTTTTGATG TGTTCTGATTGTAATTATTCACAGGTTGAAATACTGAACTTATATTTTTTTTCTCCCTATCCTGGAAAAATGGCATGAAA ATTGAATTAAATGTTGTATATCCGTAGTCAAGTTGCAAATAAATGTTATGGGAATGGTCCTTAGTCCTTACATCACAATT AAAGGTAGTCAACTAAATGCTAAAATTTGGATACCACTCAATTATTGGTGCAACTGAGGACCCCACCGAATTTTTTTGTT AAATCAATACCTATGCAACTTACTGTATAAACCTTTGATCATGATTTTGTCAGATATCATTATCCAAACTTTCTAGTTTC CATTTGCACTAGTAGCCTCCACTGTATTATGTTTCTTGATTCCACTTTTATCTAACTTTTCAGGTTCTTCCACCTTTAAC CAAATAGCAGCACCTGAAACATTTATAATTGGAGGGTTTGTGCAATGGATCATGAGACAGAGCCAAGATATACTCGAAAC TAGTCATGTCTAATGTAGATTTTGTTGTCTAACTAAGAGAAATTGTAGCAGATAGGTCCATCATCATGGGCCAGTTTTGT TCTGAGCTCTTGTATGTTGTCCCATCAGATATAGCACTATTATTCATTGTTTGTAATTGTAGATCCAGAAAGTAACATGA TAATTACTTTCTTTGGCTTAAAAAGTAAATCATTCAGTCTGAATTTCTCATGAGAACAATTATTTTGCTCAAATCTGTGA ACTATTTAAAAAGAATCTTGAGATTCATATTTTCTACCCGTTCTCTCTTCACTTGAAACAACTCTTC
CDS sequence (LotjaGi6g1v0184600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAACAGTGCTCCTGATTGGAATTTTGGGAGTGATACCTGTCTCACCAACCAAAAGAAACCCATAGGGATGGACAA TGATCTTGTGGAGATCCTTTGGCAAAATGGCCAGCTAGTATTGCAGAGCCAAGCACATAAGAAATCAGTTGTGAATTCTA TCGCCTCAAGACAGGTTAACAAAAAATTTCAACCAACATTGAGGACTAGTGATCCATTTGGGATGATCCAAGATGATGAG ACAATCTCATGGATCCAATACCCTCCGGACCATTCGCTGGAACAAGAATTATGTTCAGAACTTTTATCTGAACTGCCTCT CTGTGAAGTTGAGTCTTACAGGCAAATCAGGCAATTTGGAGATGCAAAGTTTTCCAAATTGGATGATTCCAGTATGAAAC CCTCCTGTGTTCAGGAATTCTCAGGAATTCCTATGCCTGCTCCAAAATTTCATGCTTCTGATTCATATCAGAAAAACAAG GTCCAAAACTTTCCCCACTTTTCAGCACTCCCTATTGTTTCTACAGCATCTGCTAATGCACATTTGAGAGACAAAATTGC TGGTAATAATGTGTCAAAAGGTGAGATTAGAGAGTGCTCAGTGATGACGGTTGGTTCGAGTCACTGCGGAAGCAATCACA TCCCTCAAGATCCTGATATAAGCAGGGCTTCAAGCAATGGTGCTTGGACTACTACTTTATCTGCTGAGCCTGAAGCTGGT AGAGATGATGTCCATAGAACAATTCCGCAGTGTGAGAAAGGAAAACCGGAGATGCTTGAACCAACTATGACTTCATCTTC AGGGGGCTCAGGCGGTAGTAGTCTTGGAAAAACTTGTTCCCTATCTACAAGAAGCCAGGGCGAAAAAAGGAAAGGGATTG ATGTGGAAGAACAAAGTGAGGACACAGAACTCAAATCAGCTGTTGGAAATAAAGCATCTCGGCGAGCAGCGTCAGCGCGA AGGAACCGTGCTGCTGAAGTGCATAATTTGTCAGAAAGGAGAAGAAGAGATAGGATTAATGAGAAGATGAGGGCATTGCA ACAACTCATACCTCACAGTAGCAAGACAGATAAAGCATCAATGCTAGAAGAGGCGATCGAATACTTGAAATCACTTCAGT TACAGCTTCAGGTAATGTGGATGGGAACTGGCATGACACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATG GGAATGGGAATGGCTACACCTCCTTTTCCTCCAATTCACAACCCAATGCAGTTACCAAGAGGGCCACTCGATCAATCCAT AGCAGCATCTCAGACCCCAAACCAGTCATTAATGTCCCCAAATCCTATTTTGGGTGCCTTTAACTACCAGAATCAGATGC AAAATCCAGCAATTTCAGAGCAATATGCGCGTTACATGGGCTATCATCTTATGCAAAATGCCTCTCAGCCAATGAATATG TATAGATATGGTCCCCAGTCAGTGCAACACAGCCAAACAATGATTCCACCCAGCAATAGCAGTGGATCCATGAGTGGAGC AGCTAGCATTGATGATCCTGTGAGTGGAAAAATTGGTGCATGTCACCATGTGGAACGCTGA
Protein sequence (LotjaGi6g1v0184600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNSAPDWNFGSDTCLTNQKKPIGMDNDLVEILWQNGQLVLQSQAHKKSVVNSIASRQVNKKFQPTLRTSDPFGMIQDDE TISWIQYPPDHSLEQELCSELLSELPLCEVESYRQIRQFGDAKFSKLDDSSMKPSCVQEFSGIPMPAPKFHASDSYQKNK VQNFPHFSALPIVSTASANAHLRDKIAGNNVSKGEIRECSVMTVGSSHCGSNHIPQDPDISRASSNGAWTTTLSAEPEAG RDDVHRTIPQCEKGKPEMLEPTMTSSSGGSGGSSLGKTCSLSTRSQGEKRKGIDVEEQSEDTELKSAVGNKASRRAASAR RNRAAEVHNLSERRRRDRINEKMRALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGTGMTPMMFPGIQHYMSQM GMGMATPPFPPIHNPMQLPRGPLDQSIAASQTPNQSLMSPNPILGAFNYQNQMQNPAISEQYARYMGYHLMQNASQPMNM YRYGPQSVQHSQTMIPPSNSSGSMSGAASIDDPVSGKIGACHHVER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 513 | 497 | 7.2E-150 | – | |
| PANTHER | 17 | 513 | 497 | 7.2E-150 | – | |
| MobiDBLite | 253 | 334 | 82 | - | – | |
| MobiDBLite | 260 | 286 | 27 | - | – | |
| MobiDBLite | 287 | 308 | 22 | - | – | |
| Gene3D | 318 | 379 | 62 | 3.0E-19 | ||
| MobiDBLite | 319 | 334 | 16 | - | – | |
| SUPERFAMILY | 321 | 389 | 69 | 3.53E-20 | ||
| ProSiteProfiles | 323 | 372 | 50 | 18.368 | ||
| CDD | 326 | 377 | 52 | 7.79403E-19 | ||
| Pfam | 327 | 373 | 47 | 2.9E-15 | ||
| SMART | 329 | 378 | 50 | 5.5E-18 | ||
| MobiDBLite | 489 | 516 | 28 | - | – | |
| MobiDBLite | 489 | 508 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0184600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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