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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0185400 |
| Transcript ID | LotjaGi6g1v0185400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 56; TAIR: AT4G19645.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; Swiss-Prot: sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B; TrEMBL-Plants: tr|A0A1J7HQU6|A0A1J7HQU6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0185400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47975819..47981063) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAAGAAAAATAAAAAGGAAAAGGAAAAAGTGAAAGAAAAATAACGGTTGGTAGTTACATTGGACAATATTCTGTTGT TGAGTTCTCATCAATCCAGTACTCTTTTCATGATCTTCATCCATCCATCTAGGGTTTTCAGAATTCCCCCAAATCAATCA ATGCGTTTCTGAATGCATCTCAAAACGACGCAGCATAAGATCTCGATTCCTCATCCATAGCAGTTCGATTCGCCAAACCC CAATATCCCCACATTACAGCATCTTCGACAGGGTACGATGTTTTGGTCCTTTCAACAGAGAATCAATATGTTCCTTTTTT TTTTGTTTTTTGTTTTAAATTATTCAACTTTGCACAAATGGGTCTGTTCTGGTGATTTCAGAAAACCAGAACAGGATCAT TTGCAATCACATTTGCATTTTCAAAGATCTATTTCTTTATTTATCCTTTTATAGATAGAATCAAAACTAGTTTTTTTTTT TTTTAAGAATAATCAGTTTTCCATGCTTTACTTGTCATTAGTATTTTAGAAGAGTAACTGGTCTGGCTTGACTTTAATTT ATGTAGTATAATCTACAATAAGTGGAAATCATGTATCAACTGTTTTTAAGATTGAAACATATTAGAATTTTTTTTTCTTT TTCTCATAGCCTCTCAGGTTGAATAATTGATTGTCTAATTGATGATTTTCCTTTGTTTCTGTTGGTTGGAGGGTCTATGA TACTGTTTTTCATTTTGTATTTGTTACTTAATTGTGCATTGCTGAGCAGCTAGGTGTGAAAATCAGAACACAATTTTGGG CGAAAATTGAAATGTACGCATATAAAGCTTGGAGTATTTTCTGTTTGAGTATTTCAGAGGTTTTGACAGGAACAAGGATA AAACGTATTACGATTTGTTTTGGAAATGCTATTCTATGATGTCTCTGATTGTAACTGAATTCTTGGACTTTCCATGGGAA GTTTTTACCTGTTTAGGGTTGGTTTATGACAAGAGTTTTCATGGCTTCTCTCTAATGTGCTTCTTGTGGTTTATTTCTAG GAATCACCTTGTTAAGTAGGCTGAGATATTAGAAAGCTCTTTAAAACTAGTACTTTATTTTTTGGGTTATGATCTTCTGT GTTGTTTTCATAATGGAGTTACTTTCCTGCATTTTCTTCGCTTATCTTCTTTCCTCCCAAAATAAACTTGTTTTGGCCAA AAGAACATTTAATTACTTAATTAGTTTCTTTATAATGGTTTTTGTTATCTTTAACTCAACTCATTTTCAAAGATAAGCCA TGTTGTGATTTATCTTTTCGGTTTTAAGTTTTTAATATCATGTCTTCAAACTGTAGTTGTTCACATAATAGTTGGCTGGA GGTGGAAAGCAAAAAAGAAAATATAATCTACAAGAGATTTCGCATCCAAGGGATGGCTGCAATGTTGGATTCTAAAGAAA TTATGGATCTCAAATCTTACCAGAACCAGGCTAATATCTTCGTGAAGGAGTATATACTAGCAGACTCTCTGGTTCCGTAC ACTTCTGTTATTGGTGGCATTTTTGCTTGCAAAATGGTATTTCACATTTAGATAAGTCTCCTCTAGAGTATGTTTGTAAA GTGTGCAAGTAAGGTTATATCTACCATTGATTTAATTTGATATACATTATCAGCTTAACATGTAAAAATCCAACAGCAGA TACATCCTTATTTTCCTACTTTACAAACAAACTCATTTTAGTGGAGCTTTTTCTTTACTTCTTAGTATGTTGTCTTCTCT ATTTTCTTAAAGTATGTTATGTATGAGATATCAAATTTACCGCCACTATCTTTAAACATGGTCTTGCCTGCTTTTCAGGT CTACGATCTTATTCATGTTATTGGTACTAATTACTTTAAGAGCTATTCCAGCTTTGCAAAACTCCAACGTATTGAGTGGA ATAACCGGTAACTAGATGTTTTCATTGTGTGAAAAATCTCTTCATTAGTTGTTTGTGTTATTAGTTATTTATGGACTCTT ATTACTTTTGCAGAGCTATATCAACTATCCATGCCATTTTCATAACAGCTATGGCATTACACTACGTTTTTTGCTCAGAT CTATTTGCTGACGACCAGTCTACTGAACTTATTACACTTCGAAACTCTTCATTGTCAACGTTTACATTGGGGGTAAGAAT GGTCTAGCTTTTTCATACTTTTTGTGTTTTCTTATCCTTTGAGTTCCTGCAATTATTAACTATGAGGCCTGTATTCTCAA TATTATTTCTTACATGAGGTTCTTGTTATATATTTGCTTTTATATGGATCAGTTAACTACATGATTTTCTAATGTGTATG TATTGAGTCCATTGTGACAAGATATTTTCTATTTTTTATTTCTTATTTTTGATATTTATTGCGACAGGTTTCTGTTGGTT ACTTCATTGCTGATCTAGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATGTAAGGATAATATCTTTT TAACTTGCATAGTAGCCAACCTGTCTTTAAGTTGATTACTCATTCAATTTTAAGATATTTGACTTGATAGGAACCCAGCT GGAGATGATTATGGTCGGGACTTAACCTGACTTCATATTAATATTGGTTCAGGTGATTCACCATCTGTTTTCTTTAGTAG CAGTAGCTTATTCAATGTTGAGTGGGGAAGGACAGCTTTACACCTACATGGTTCTGATCTCTGAGACAACTACTCCAGGA ATCAATTTGAGATGGTAATTATGTACTTATAATTGAATTGAATTTTAATATGTCACGTAATGTATTTTCATTGTTCATGA TTATATTGGTGTTTGTGAAGGTATCTTGATGTAGCAGGAATGAAAAGGTCCAAAGCTTATCTCATCAATGGGGTTGTAAT ATTCCTTTCTTGGCTGGTATGTTAAATTGTTGCAGAGAAATATATTTATCTAGCTCTTATCATGTTTATTGAAGAATTGT TGAGATATCATATCATGATGAGTTTGGACTTGCCTCATGCAATGGTCTATATGCAGGTTGCCAGAATACTTCTGTTCATT TACATGTTCTACCACGTCTACTTGCACTTTGATCAGGTAATAATTGTTAGCACACCGAATTGGAAAATTATATGGTGTGT GGTGCTTTATAGACTGCAGATCTTGACATTCAATATTTGGCCTTTTAGAATTTGAAATATATCCAAATATTTGAATTTAT CATTTAAATTCAAGTAGGGGGTGATCTAAATGATGATGTGAGGAGCCCATTTAGAGGATATGGGGTGTTCAGGGGGGGGG TATAGACATAGTACAGGGGTATCAAGAGCGAAGAGTAAACAGTAGGTGCATTATCTTGTACAAAAGTGGTTAAAACAAAG TAGCCTTTAGAGAAGGATTTTGGAGGAAGGCTTTACGAGATCCCAGAAATACCAATGATGATGGTCCTTGTGAACCAAAG GGTAAAGATTCTTGGTCATGTGATACAAGCCTGCAACATAAGGTTAAGGTTACAAAGAAGTGTTATAAAATATGGTTCTT GTGTAATTGTGCTGAGGATTAGGATAATTATTAGTTTAAGAAAAGTGAGAGTAAGAGCATTTGATGGGTTATCCTAATCC TTAATTGCCAAAGCTTGAAAATGAAAGTATTACAGGCTTTCTAAAGGGTGACCAAGAAAGACAAGGCAATTAAACATAGT AAAATGCTTTGTAAGTGAAAGGAAAGAAAAATTCTTCTTCATAGAACAAGGTGTCAATGAAAGATTGAGCGGTTACTTAA GGATAGGTTTTGTTAAGCTTTGACAACCTAAATACTAGAGTGGAGGATCAAAACTAATCATTATCTCATAAATTTAGGAA TATGAGGTAGAGGAGCTGTAAAGAGAATGGATAATGGTAAAGAAGTTGGAACTAATAATATAAGGGGTTAGGAGAAATAG ACATTACATATCTCACTAAGTTGTTTAACGAGATTATGAGATTTAGGAGCACATCGGATGAATGGGGAATTGAAGTGCTT TGGAGGGTAGGTATAGAAAAGAAAGAGAGGATATGCTTATCTTTGTGGGGAGCAAGAGGGTTGTTGTGTGTAAGAATGGA TCTATGTTTACTGTGGTAGTGTTTCGAAGGCCAAATTAGTACACTTGGTCCAATGAATTTACATTTTATTGACACCTTGC TGGGTTACTATTTGTCACTCGGGAGAGATGAAATTTTTACTCTCTAAAATGGTTGTAACTGCAATATTGTTGTGTGGTAA TCTTAGCTATTATTGGCTTACTTTTCATCTTCTATTTATGCTCAAACAATGTGTAATTGGTAATAAGGATAACAAGATAG TATTGTTCAATTATTCAACAGGTTGAGCAGATGCACACCTTTGGGCGGATATTAGTAATTGTTGTGCCATTGGTGCTATC AGTTATGAACTTGGTTTGGTTTTCAAAGATCATCAAAGGCTTGAGGAAAACGTTGGCAAAGAGGCAGTAAATGATTGCTC AGTACAACTTTTTGAAGGAAATGTGTAGATAACCCTGTTGATATTAGTCTCAACTTGCGGTGCACTGAAAGATGCAATAG TTTCCATTATATGATTTTACATTGTTCTGGTCCCTTTAGGATCTGAACATACTGTATAAATCTGTTAAATATGAGAGGGA ATCCACTTCGAGAGTCAGTTTTTAACTTTATACTAAACTAGCATCACATTCACACCTGTCCATCGCATGGGTACTAGATT TATTCATTCAATTCAATTTTTCATGTGTAATTTTCTACAAAGATGACATCAATTTTATTTCCCAGTGTAAAGAAACAAGA AGAATATTCAATTTACTCTGCACCCTGTAAGCAAGTGAACTTGAAATTAAGTTAGGTGTGCAAATGAGAACATTCAATTT TTGTATCAATACTTCATTACAACATGAATATCGTTTAAGCCAAATATGATCTTTAAGTATCAATTGCCAATTGGGACAGT ATATATTATTTTCATATTCAATGATAGGGATTATTTCACGGTAATTGTGAAGTTTTAATAAGTATAATTAGCAAGAGTGA CATTATTAAGGGAACCGTGTTCAAGTTCCAACTTACAAATTGATTATTTGAACATTTTTTAAAAGCAAAGAGACATGGGT TGTTATACGGTGGAACAATTTTTGGCTCATCAATGAACCATTATATTAAAGCGTTTAATATACTATTAAATAAAAATAAT ATTTATTTAATAATCAATCTAACAGTTAGATATGATGGTTCATCG
CDS sequence (LotjaGi6g1v0185400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCAATGTTGGATTCTAAAGAAATTATGGATCTCAAATCTTACCAGAACCAGGCTAATATCTTCGTGAAGGAGTA TATACTAGCAGACTCTCTGGTTCCGTACACTTCTGTTATTGGTGGCATTTTTGCTTGCAAAATGGTCTACGATCTTATTC ATGTTATTGGTACTAATTACTTTAAGAGCTATTCCAGCTTTGCAAAACTCCAACGTATTGAGTGGAATAACCGAGCTATA TCAACTATCCATGCCATTTTCATAACAGCTATGGCATTACACTACGTTTTTTGCTCAGATCTATTTGCTGACGACCAGTC TACTGAACTTATTACACTTCGAAACTCTTCATTGTCAACGTTTACATTGGGGGTTTCTGTTGGTTACTTCATTGCTGATC TAGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATGTGATTCACCATCTGTTTTCTTTAGTAGCAGTA GCTTATTCAATGTTGAGTGGGGAAGGACAGCTTTACACCTACATGGTTCTGATCTCTGAGACAACTACTCCAGGAATCAA TTTGAGATGGTATCTTGATGTAGCAGGAATGAAAAGGTCCAAAGCTTATCTCATCAATGGGGTTGTAATATTCCTTTCTT GGCTGGTTGCCAGAATACTTCTGTTCATTTACATGTTCTACCACGTCTACTTGCACTTTGATCAGGTTGAGCAGATGCAC ACCTTTGGGCGGATATTAGTAATTGTTGTGCCATTGGTGCTATCAGTTATGAACTTGGTTTGGTTTTCAAAGATCATCAA AGGCTTGAGGAAAACGTTGGCAAAGAGGCAGTAA
Protein sequence (LotjaGi6g1v0185400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAMLDSKEIMDLKSYQNQANIFVKEYILADSLVPYTSVIGGIFACKMVYDLIHVIGTNYFKSYSSFAKLQRIEWNNRAI STIHAIFITAMALHYVFCSDLFADDQSTELITLRNSSLSTFTLGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLFSLVAV AYSMLSGEGQLYTYMVLISETTTPGINLRWYLDVAGMKRSKAYLINGVVIFLSWLVARILLFIYMFYHVYLHFDQVEQMH TFGRILVIVVPLVLSVMNLVWFSKIIKGLRKTLAKRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 78 | 78 | - | – | |
| PANTHER | 8 | 277 | 270 | 7.0E-165 | – | |
| PANTHER | 8 | 277 | 270 | 7.0E-165 | – | |
| TMHMM | 33 | 55 | 23 | - | – | |
| SMART | 70 | 274 | 205 | 1.0E-42 | ||
| ProSiteProfiles | 70 | 274 | 205 | 36.093 | ||
| Pfam | 74 | 267 | 194 | 2.2E-32 | ||
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 79 | 97 | 19 | - | – | |
| Phobius | 98 | 116 | 19 | - | – | |
| Phobius | 117 | 140 | 24 | - | – | |
| TMHMM | 120 | 142 | 23 | - | – | |
| Phobius | 141 | 146 | 6 | - | – | |
| Phobius | 147 | 165 | 19 | - | – | |
| TMHMM | 149 | 166 | 18 | - | – | |
| Phobius | 166 | 170 | 5 | - | – | |
| TMHMM | 170 | 192 | 23 | - | – | |
| Phobius | 171 | 192 | 22 | - | – | |
| Phobius | 193 | 203 | 11 | - | – | |
| Phobius | 204 | 230 | 27 | - | – | |
| TMHMM | 204 | 226 | 23 | - | – | |
| Phobius | 231 | 241 | 11 | - | – | |
| TMHMM | 241 | 263 | 23 | - | – | |
| Phobius | 242 | 262 | 21 | - | – | |
| Phobius | 263 | 277 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0185400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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