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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0185400 |
| Transcript ID | LotjaGi6g1v0185400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 56-B; TAIR: AT4G19645.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; Swiss-Prot: sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56; TrEMBL-Plants: tr|A0A1J7HQU6|A0A1J7HQU6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0185400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47976145..47981008) extracted from Lotus japonicus Gifu genome v1.2.
GTTACATTGGACAATATTCTGTTGTTGAGTTCTCATCAATCCAGTACTCTTTTCATGATCTTCATCCATCCATCTAGGGT TTTCAGAATTCCCCCAAATCAATCAATGCGTTTCTGAATGCATCTCAAAACGACGCAGCATAAGATCTCGATTCCTCATC CATAGCAGTTCGATTCGCCAAACCCCAATATCCCCACATTACAGCATCTTCGACAGGGTACGATGTTTTGGTCCTTTCAA CAGAGAATCAATATGTTCCTTTTTTTTTTGTTTTTTGTTTTAAATTATTCAACTTTGCACAAATGGGTCTGTTCTGGTGA TTTCAGAAAACCAGAACAGGATCATTTGCAATCACATTTGCATTTTCAAAGATCTATTTCTTTATTTATCCTTTTATAGA TAGAATCAAAACTAGTTTTTTTTTTTTTTAAGAATAATCAGTTTTCCATGCTTTACTTGTCATTAGTATTTTAGAAGAGT AACTGGTCTGGCTTGACTTTAATTTATGTAGTATAATCTACAATAAGTGGAAATCATGTATCAACTGTTTTTAAGATTGA AACATATTAGAATTTTTTTTTCTTTTTCTCATAGCCTCTCAGGTTGAATAATTGATTGTCTAATTGATGATTTTCCTTTG TTTCTGTTGGTTGGAGGGTCTATGATACTGTTTTTCATTTTGTATTTGTTACTTAATTGTGCATTGCTGAGCAGCTAGGT GTGAAAATCAGAACACAATTTTGGGCGAAAATTGAAATGTACGCATATAAAGCTTGGAGTATTTTCTGTTTGAGTATTTC AGAGGTTTTGACAGGAACAAGGATAAAACGTATTACGATTTGTTTTGGAAATGCTATTCTATGATGTCTCTGATTGTAAC TGAATTCTTGGACTTTCCATGGGAAGTTTTTACCTGTTTAGGGTTGGTTTATGACAAGAGTTTTCATGGCTTCTCTCTAA TGTGCTTCTTGTGGTTTATTTCTAGGAATCACCTTGTTAAGTAGGCTGAGATATTAGAAAGCTCTTTAAAACTAGTACTT TATTTTTTGGGTTATGATCTTCTGTGTTGTTTTCATAATGGAGTTACTTTCCTGCATTTTCTTCGCTTATCTTCTTTCCT CCCAAAATAAACTTGTTTTGGCCAAAAGAACATTTAATTACTTAATTAGTTTCTTTATAATGGTTTTTGTTATCTTTAAC TCAACTCATTTTCAAAGATAAGCCATGTTGTGATTTATCTTTTCGGTTTTAAGTTTTTAATATCATGTCTTCAAACTGTA GTTGTTCACATAATAGTTGGCTGGAGGTGGAAAGCAAAAAAGAAAATATAATCTACAAGAGATTTCGCATCCAAGGGATG GCTGCAATGTTGGATTCTAAAGAAATTATGGATCTCAAATCTTACCAGAACCAGGCTAATATCTTCGTGAAGGAGTATAT ACTAGCAGACTCTCTGGTTCCGTACACTTCTGTTATTGGTGGCATTTTTGCTTGCAAAATGGTATTTCACATTTAGATAA GTCTCCTCTAGAGTATGTTTGTAAAGTGTGCAAGTAAGGTTATATCTACCATTGATTTAATTTGATATACATTATCAGCT TAACATGTAAAAATCCAACAGCAGATACATCCTTATTTTCCTACTTTACAAACAAACTCATTTTAGTGGAGCTTTTTCTT TACTTCTTAGTATGTTGTCTTCTCTATTTTCTTAAAGTATGTTATGTATGAGATATCAAATTTACCGCCACTATCTTTAA ACATGGTCTTGCCTGCTTTTCAGGTCTACGATCTTATTCATGTTATTGGTACTAATTACTTTAAGAGCTATTCCAGCTTT GCAAAACTCCAACGTATTGAGTGGAATAACCGGTAACTAGATGTTTTCATTGTGTGAAAAATCTCTTCATTAGTTGTTTG TGTTATTAGTTATTTATGGACTCTTATTACTTTTGCAGAGCTATATCAACTATCCATGCCATTTTCATAACAGCTATGGC ATTACACTACGTTTTTTGCTCAGATCTATTTGCTGACGACCAGTCTACTGAACTTATTACACTTCGAAACTCTTCATTGT CAACGTTTACATTGGGGGTAAGAATGGTCTAGCTTTTTCATACTTTTTGTGTTTTCTTATCCTTTGAGTTCCTGCAATTA TTAACTATGAGGCCTGTATTCTCAATATTATTTCTTACATGAGGTTCTTGTTATATATTTGCTTTTATATGGATCAGTTA ACTACATGATTTTCTAATGTGTATGTATTGAGTCCATTGTGACAAGATATTTTCTATTTTTTATTTCTTATTTTTGATAT TTATTGCGACAGGTTTCTGTTGGTTACTTCATTGCTGATCTAGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATA TGAGTATGTAAGGATAATATCTTTTTAACTTGCATAGTAGCCAACCTGTCTTTAAGTTGATTACTCATTCAATTTTAAGA TATTTGACTTGATAGGAACCCAGCTGGAGATGATTATGGTCGGGACTTAACCTGACTTCATATTAATATTGGTTCAGGTG ATTCACCATCTGTTTTCTTTAGTAGCAGTAGCTTATTCAATGTTGAGTGGGGAAGGACAGCTTTACACCTACATGGTTCT GATCTCTGAGACAACTACTCCAGGAATCAATTTGAGATGGTAATTATGTACTTATAATTGAATTGAATTTTAATATGTCA CGTAATGTATTTTCATTGTTCATGATTATATTGGTGTTTGTGAAGGTATCTTGATGTAGCAGGAATGAAAAGGTCCAAAG CTTATCTCATCAATGGGGTTGTAATATTCCTTTCTTGGCTGGTATGTTAAATTGTTGCAGAGAAATATATTTATCTAGCT CTTATCATGTTTATTGAAGAATTGTTGAGATATCATATCATGATGAGTTTGGACTTGCCTCATGCAATGGTCTATATGCA GGTTGCCAGAATACTTCTGTTCATTTACATGTTCTACCACGTCTACTTGCACTTTGATCAGGTAATAATTGTTAGCACAC CGAATTGGAAAATTATATGGTGTGTGGTGCTTTATAGACTGCAGATCTTGACATTCAATATTTGGCCTTTTAGAATTTGA AATATATCCAAATATTTGAATTTATCATTTAAATTCAAGTAGGGGGTGATCTAAATGATGATGTGAGGAGCCCATTTAGA GGATATGGGGTGTTCAGGGGGGGGGTATAGACATAGTACAGGGGTATCAAGAGCGAAGAGTAAACAGTAGGTGCATTATC TTGTACAAAAGTGGTTAAAACAAAGTAGCCTTTAGAGAAGGATTTTGGAGGAAGGCTTTACGAGATCCCAGAAATACCAA TGATGATGGTCCTTGTGAACCAAAGGGTAAAGATTCTTGGTCATGTGATACAAGCCTGCAACATAAGGTTAAGGTTACAA AGAAGTGTTATAAAATATGGTTCTTGTGTAATTGTGCTGAGGATTAGGATAATTATTAGTTTAAGAAAAGTGAGAGTAAG AGCATTTGATGGGTTATCCTAATCCTTAATTGCCAAAGCTTGAAAATGAAAGTATTACAGGCTTTCTAAAGGGTGACCAA GAAAGACAAGGCAATTAAACATAGTAAAATGCTTTGTAAGTGAAAGGAAAGAAAAATTCTTCTTCATAGAACAAGGTGTC AATGAAAGATTGAGCGGTTACTTAAGGATAGGTTTTGTTAAGCTTTGACAACCTAAATACTAGAGTGGAGGATCAAAACT AATCATTATCTCATAAATTTAGGAATATGAGGTAGAGGAGCTGTAAAGAGAATGGATAATGGTAAAGAAGTTGGAACTAA TAATATAAGGGGTTAGGAGAAATAGACATTACATATCTCACTAAGTTGTTTAACGAGATTATGAGATTTAGGAGCACATC GGATGAATGGGGAATTGAAGTGCTTTGGAGGGTAGGTATAGAAAAGAAAGAGAGGATATGCTTATCTTTGTGGGGAGCAA GAGGGTTGTTGTGTGTAAGAATGGATCTATGTTTACTGTGGTAGTGTTTCGAAGGCCAAATTAGTACACTTGGTCCAATG AATTTACATTTTATTGACACCTTGCTGGGTTACTATTTGTCACTCGGGAGAGATGAAATTTTTACTCTCTAAAATGGTTG TAACTGCAATATTGTTGTGTGGTAATCTTAGCTATTATTGGCTTACTTTTCATCTTCTATTTATGCTCAAACAATGTGTA ATTGGTAATAAGGATAACAAGATAGTATTGTTCAATTATTCAACAGGTTGAGCAGATGCACACCTTTGGGCGGATATTAG TAATTGTTGTGCCATTGGTGCTATCAGTTATGAACTTGGTTTGGTTTTCAAAGATCATCAAAGGCTTGAGGAAAACGTTG GCAAAGAGGCAGTAAATGATTGCTCAGTACAACTTTTTGAAGGAAATGTGTAGATAACCCTGTTGATATTAGTCTCAACT TGCGGTGCACTGAAAGATGCAATAGTTTCCATTATATGATTTTACATTGTTCTGGTCCCTTTAGGATCTGAACATACTGT ATAAATCTGTTAAATATGAGAGGGAATCCACTTCGAGAGTCAGTTTTTAACTTTATACTAAACTAGCATCACATTCACAC CTGTCCATCGCATGGGTACTAGATTTATTCATTCAATTCAATTTTTCATGTGTAATTTTCTACAAAGATGACATCAATTT TATTTCCCAGTGTAAAGAAACAAGAAGAATATTCAATTTACTCTGCACCCTGTAAGCAAGTGAACTTGAAATTAAGTTAG GTGTGCAAATGAGAACATTCAATTTTTGTATCAATACTTCATTACAACATGAATATCGTTTAAG
CDS sequence (LotjaGi6g1v0185400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCAATGTTGGATTCTAAAGAAATTATGGATCTCAAATCTTACCAGAACCAGGCTAATATCTTCGTGAAGGAGTA TATACTAGCAGACTCTCTGGTTCCGTACACTTCTGTTATTGGTGGCATTTTTGCTTGCAAAATGGTCTACGATCTTATTC ATGTTATTGGTACTAATTACTTTAAGAGCTATTCCAGCTTTGCAAAACTCCAACGTATTGAGTGGAATAACCGAGCTATA TCAACTATCCATGCCATTTTCATAACAGCTATGGCATTACACTACGTTTTTTGCTCAGATCTATTTGCTGACGACCAGTC TACTGAACTTATTACACTTCGAAACTCTTCATTGTCAACGTTTACATTGGGGGTTTCTGTTGGTTACTTCATTGCTGATC TAGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTGA
Protein sequence (LotjaGi6g1v0185400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAMLDSKEIMDLKSYQNQANIFVKEYILADSLVPYTSVIGGIFACKMVYDLIHVIGTNYFKSYSSFAKLQRIEWNNRAI STIHAIFITAMALHYVFCSDLFADDQSTELITLRNSSLSTFTLGVSVGYFIADLGMIFWFFPSLGGYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 78 | 78 | - | – | |
| PANTHER | 8 | 148 | 141 | 6.8E-74 | – | |
| PANTHER | 8 | 148 | 141 | 6.8E-74 | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| ProSiteProfiles | 70 | 148 | 79 | 10.059 | ||
| Pfam | 74 | 140 | 67 | 3.7E-6 | ||
| Phobius | 79 | 97 | 19 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 98 | 116 | 19 | - | – | |
| Phobius | 117 | 141 | 25 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 142 | 148 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0185400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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