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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0186200 |
| Transcript ID | LotjaGi6g1v0186200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|A0A072UVU8|A0A072UVU8_MEDTR Myb/SANT-like DNA-binding domain protein; Found in the gene: LotjaGi6g1v0186200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48024037..48029228) extracted from Lotus japonicus Gifu genome v1.2.
TTATTCTGTCATTTCAAATATTATTTTCTTGACCTATAAAATAAAAATGAAAATAAAAGGAACACTGATTTTATAAACTT TACCACTTACCTACCTGCTTCGGCTGATTTCATTTTACCCCGACAAAGACTGTCACCGCCGGGAACAAAACCCGGCGACC ATGACAGGTGAAATTCCCTTCTCCTTCTTCACCTTCTTCTCCTTCTTCACTCTCGATTTTGGCATGTATTCACTCTCCAC CAATTCAATTTCCAGTCCCCGTCAAAATTTCTCATGTGGGGTTATCTTTTTCTTCCTACCCTCAAAATATTTTCCAGTTT TTCTAGCTAAAAAGGGTTTCTTTTTCATTTTATTTTGTTGGGTTCTTGCAACATCATTTTTTCTCTCAACTCTGAACTGA AAGTTGTTTTTTTTTTCATTTTAAAAATTAAATTTTTAAGTTTTTTTTAGTACAGTGTTTGAGCTCTTGGTATTCATTGT TGTCTTGTTTAATGCTCTTGGTACTCATTGTTGGTACTTAGTTGTGTTTTAGTCTGTAGTGTGAAGACCCATTTCTTATA AGGGTTGACTACTGCAATTGTTGATTCTCTTTGCCATGGTTTTATGATCCTTGGTGTGATTTTAGAGCTTCACTAGTAAT GTTTGTATTGTGTGTAGCATTGACTTCAAACTTTACTTGAAGAAACACTAGGTTATATTAGCCTTGTTGTATTATGATTA ATTATGTCGATAGCGGAGTTAAGATTTAATAAATCTGATGAAGGATCAAAAGGTTAAGATGGTTGTCATCAACCATATCT TATTTTTGGTATAGGTAGGATTGAATGATGAGTAGCGTGGTAGAACGTTTCGAATATTAGAAAATGGAAGTTCCATGCAA ATGCATACATTTTTTAATGATAAGCGTTTATATAATCAGTTAAGCAATTTTTTCCTCCGTAAAATGGTACAGTTCATGCC TTTGGTTGTACATTCAGGAATTTTTAGCTTGAAATGCTGTTATATACAACTGAGAGTTGATAGTTGATCAATTCTCTGTA TTTTTATAGTTGTGTAATGTCAAATTCGTATGATTAATTTGATGAGCCTCTACTTTCACCTACCAAACAAAACTATATCT CAAGCGATTTTGGGGACATTCCATTTTTCTCTGCCATCATGAGAACAGCTACTGAATTTCAGCTGCTGGCATGACACTAC GGTATTTACTGTAATTCTTCTTGACTGAACTGTTCAAAATCCTGAGGGGTAGGGTTTTCTTGTTCTGACTTTCATACTGT CTGAATTGATTGATCTCTTTTTATGGATGAGACTGAATTTAAATCCCTATTGCAATGCCCTTTTTTTCCTTGCACAAAAT CTATGTCACACTTTTATGTTTGTTCATCTCGGTACCCAACAAGCAGATATCATAGCGTGTTATGTGGATTTTCAGGGATG CACCCAAAAGTATATCAGACTCGTAGCTCTACTGGCAACGAGAGAGTAAAATACATTGTTTGGACTAGTGAAATGGACGA TTGCCTCACTGAGGTGCTTGCTGAGCAAGTGAAAAAGGGGAACAAATTGGATAATATGTTGAAGCCTGCAGCATTAGAAG CTGCAGTGGAAGCATTGAATGAAAATTTTGGCATGTATTTGTCAAAAGGACATATAAAGAATCGGCTAAAAACATGGAGG AAGCAGTTTGTGGTTTTGAAGGAGCTCCTTGCTCATAGGGGATTTGCGTGGAATAAGACACAGAAGATGGTTGTTGCAGA TGATTCTGTTTGGAATGATTACATCAAGGTAATATTGTTACCTGTGACTGTGAAACTATTTGCACCCCATCAGTTTGCAG TTTTATGTTGGTTGTCTGATATTCTTCTGTTACCTGCAGGCGCACCCGGATGCCAGGGCTTTCCGAGCAAAATCCATCGA AAACTATGATAAATTATGTATTGTCCTTGGAAATGATGACACAGCGGCAAGCTTATCTGATAGTGTTACAGAAATTGATG TGAACTTCTCAGTTGACAAAGTTGATCCAGATCTTGTTATTTTGTCAGAAATACAAACTGATGGAAACCTGCCCAAAAAC CTCAGGTGGACAGAGGAGATGGACCGTTGGCTCGGAAAGATTCTTGTAGAACAAGTGAGGAAAGGCCTTAAAATAGATAA GGTTTTTCAGACTGAAGCGTATGACTCAGCTGTTTCAGCCATGAATGCGAAATTTGGGCTTCATCTAACGAAAGGCAACA TTAAAAATCGTCTTAAAACTTGGAAGAGACAGTATGAGCTATTGAAGGAAATTCTGTCTCATGATGGATTTAAATGGGAT GAAGCAAAGAAAATGATCGCTGCAGATGATCCTACATGGAATGAGTACATCCGGGTATTTCAAATTTTAAATTTATGCAG TTCAAAATCATGATTTTTTTACATTAGTAATCTAAAAATTTATAATTGATCAAATTTAAGTAATGGTTTTAATAGAAATA AAAAAATATAAAAATTAACAAAAGATGATGCGCTTGATGTAATAGAAACCACATGACACATTGAAAATTAGATTAGATTG GGGTAAGTCCTCACATTCAGCCATGAGAACTCAAATTTAATATGTAAAAATTGATTTAGTTCAACAATCAGATATTGTTC ATTCTTTTAGTCTGGAAGACCATTTCTTATTTATGCATATGGATTGGATCACATTAATTGAGAATTCAAGTTTGTGTAAA CTTTACATTTACTCATTCTTCCTATTATGTCAGACACATCCAGATGCAAGGTCCTTTCGTGCTAGAGTTTTTGAGAACTA TGAACAGTTCTGCACTATCTTTGGCCATTTTACTGAGCATTTGCATTTTGATGAGTCTGTGCATTGTGATGAGTCTGCTC CTTGTGATGAGCCAATGGAGGTTGCAAGTGTCTGTCCGGTTAGCTATTATAGTAATGCTAAAGATCCAGGGAAGCAAATT AGGTGGACAAGTGACATGGACAGCTGTCTAAGTGAAATCCTTGTGGAGCAAATTAAACTCGGCAACAGAATTGACAACAA ATTAAAACCTTCTGCACTGGAAGCAGCTGTGTTGGCTATTAATGAAAAGTTTCAGCTTTATTTGGTGAAAGAACATGTTA AAAATCGTCTGAAAACGTTGAAGAAACAGTATGATGTTCTGAAAGAACTTTTGGGCAAGAGTGGCTTTGAATGGGATGAG AAGCGAAAAATGGTCATTGCAGATGACTCTGTATGGAATGAATATATCAAGGTACACATAGACCTACTTTTAATTTCTAC CTGGCATTTGTTTTAGCATAATGATATTATTGTGGAACTGATGTAAGTAAACCTTTCTGGAGCAGATAAATCCTGATGCT CGGCTTCTTAAGGGACGAATTATCAGAAACTTGAATGAATTGTACATAATTATCGGCCACGGTGATCCACTGGATAGTTC CATGGATGGTGCTCGTGCTATCATGTGTATGACAGCAGATGGTGTTGGGGAAGCTCAAGAGACAAATAACCGTGGAACTT ACAATAGAACACCAAAAGGAAAGGATGTGACATGGACAGATGAGATGGATCGTTGCTTGACAGAGCTGCTAGTCAAGCAA GTAATGTTGGGAAACAAGCTCGAGAAAAATTTCAAGACCTCTGCTTATGTAGCTGTTCTAATAGTTCTAAATGAGAGATT TGGCCTGAATTTAACGATAGAAAACGTTGTAAGCCGGTTGAAAACATGGAAGAGACAGTATGGACTTCTGAAGGAAATGC TCTATCAAGGGGGATTTAAATGGGATGAGGAACGTAAGATTGTTGTTGCAACTGACTCAAAATGGAATGAATACATTAAG GTATATTTAGTCTTCCTTCATATTAATTTTAGTTTCAGAAGTAATTCAGGTTTATATTTATTTGCTATTGCAGTACTTTA GCTAGCTCCTGATGGGTGTCAATCTCAGGACATAAACATGATTATTCGGTGATAATCTTTAGCCACTTGATATCTTCTTT ACTTGATACAGTTTAGAATTTAATCAAGGACCCATCATTATTGTGATTTGTGAGTACCAAGGCACATCAAAAGATTGTCT TTAGGCATCATGTTCCTCTTATTTTTATTTGCTTGTTAGTTTGCTTGCATTTTTTTGTTGCAGTTTGTGCTAATTGTGTG TATTTTACTGGATTCATCATTGGCCTTTGTTTATTCAGAAACATCCAGCTGCTAGGCATTTGAAAGACAAACGTATCGAG AACTACAATGAATTAGGCATGATTGTTGGCAATGATCTAGGTGGTGGATATTGGTTTGAAGAAGACTGTGAGAGGCTTGA TGTAAATCTTCCTCCTAACTCAGAAGAGCATGCAGAAACTCCAGCACTGTTGTTAGCCGATGAAGAGATGAGCCTTGACA ATGCAAGTGATGAAGTGCAGGGTTCATCTGAGTCTGAGCAGACAGTGGGGGCTAGGCCTTCATCGTCATCACTTTCAAAG CAGCCATCCAAAAGAAGACGAACCGGTGATGTGATGCTGCAAATGATGAGTGTAATGGCTGAGGATATCAGTCGGATAGC TGATGCATTGACTGAGAGTAACAAGACGTCATGCCTGGAAGAAGTGGTCAAAAAGGTGCAGAATATTCCTGACTTTGATG ATGATCTCATCATTGAAGCTTGTGAATATTTATGTTTTGATGAGAAAAGGGCATTGATGTTTCTGAAATTAGATGAGAGA TTAAGGAAAAAATGGCTGTTGAGACGACTTCGTGGTTAAGGTAGATCGTTGAATTCTTTCATTAGCATGTTTTTAGTTGT GTACCCCAAGTTTAGGACATGAGAGAAATATTATGGAATGACAAGCTCTTCAGCTGTTTCTGGTGTTCTCCTATTCATGT CTTTTCTCCTATTCATGTCTGCACACACACTGCTTCAGTTGTTTCTGTTGTTCTTCTATTGGCTGTTGGCATACAATTTG TTGATAACTTTACATCTCTTCACACACACAAAAACACCCGCATATTTAAAGGTGAGAGACCATCTTTCTGAGTTGGAAAT TTTGATGAGTACATGAAATATTTAAATGGAAAATGAGAATATGGAGATTTTAGGTAGAAGAACATTGATGGTAAAATAAA AATTTGCTTAATTTTAAAAAATAGAAACTTGATTGGTATGGAAAAAGCTTAGGGGATAAAAAAGGATTATAG
CDS sequence (LotjaGi6g1v0186200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGGGATGCACCCAAAAGTATATCAGACTCGTAGCTCTACTGGCAACGAGAGAGTAAAATACATTGTTTGGACTAG TGAAATGGACGATTGCCTCACTGAGGTGCTTGCTGAGCAAGTGAAAAAGGGGAACAAATTGGATAATATGTTGAAGCCTG CAGCATTAGAAGCTGCAGTGGAAGCATTGAATGAAAATTTTGGCATGTATTTGTCAAAAGGACATATAAAGAATCGGCTA AAAACATGGAGGAAGCAGTTTGTGGTTTTGAAGGAGCTCCTTGCTCATAGGGGATTTGCGTGGAATAAGACACAGAAGAT GGTTGTTGCAGATGATTCTGTTTGGAATGATTACATCAAGGCGCACCCGGATGCCAGGGCTTTCCGAGCAAAATCCATCG AAAACTATGATAAATTATGTATTGTCCTTGGAAATGATGACACAGCGGCAAGCTTATCTGATAGTGTTACAGAAATTGAT GTGAACTTCTCAGTTGACAAAGTTGATCCAGATCTTGTTATTTTGTCAGAAATACAAACTGATGGAAACCTGCCCAAAAA CCTCAGGTGGACAGAGGAGATGGACCGTTGGCTCGGAAAGATTCTTGTAGAACAAGTGAGGAAAGGCCTTAAAATAGATA AGGTTTTTCAGACTGAAGCGTATGACTCAGCTGTTTCAGCCATGAATGCGAAATTTGGGCTTCATCTAACGAAAGGCAAC ATTAAAAATCGTCTTAAAACTTGGAAGAGACAGTATGAGCTATTGAAGGAAATTCTGTCTCATGATGGATTTAAATGGGA TGAAGCAAAGAAAATGATCGCTGCAGATGATCCTACATGGAATGAGTACATCCGGACACATCCAGATGCAAGGTCCTTTC GTGCTAGAGTTTTTGAGAACTATGAACAGTTCTGCACTATCTTTGGCCATTTTACTGAGCATTTGCATTTTGATGAGTCT GTGCATTGTGATGAGTCTGCTCCTTGTGATGAGCCAATGGAGGTTGCAAGTGTCTGTCCGGTTAGCTATTATAGTAATGC TAAAGATCCAGGGAAGCAAATTAGGTGGACAAGTGACATGGACAGCTGTCTAAGTGAAATCCTTGTGGAGCAAATTAAAC TCGGCAACAGAATTGACAACAAATTAAAACCTTCTGCACTGGAAGCAGCTGTGTTGGCTATTAATGAAAAGTTTCAGCTT TATTTGGTGAAAGAACATGTTAAAAATCGTCTGAAAACGTTGAAGAAACAGTATGATGTTCTGAAAGAACTTTTGGGCAA GAGTGGCTTTGAATGGGATGAGAAGCGAAAAATGGTCATTGCAGATGACTCTGTATGGAATGAATATATCAAGATAAATC CTGATGCTCGGCTTCTTAAGGGACGAATTATCAGAAACTTGAATGAATTGTACATAATTATCGGCCACGGTGATCCACTG GATAGTTCCATGGATGGTGCTCGTGCTATCATGTGTATGACAGCAGATGGTGTTGGGGAAGCTCAAGAGACAAATAACCG TGGAACTTACAATAGAACACCAAAAGGAAAGGATGTGACATGGACAGATGAGATGGATCGTTGCTTGACAGAGCTGCTAG TCAAGCAAGTAATGTTGGGAAACAAGCTCGAGAAAAATTTCAAGACCTCTGCTTATGTAGCTGTTCTAATAGTTCTAAAT GAGAGATTTGGCCTGAATTTAACGATAGAAAACGTTGTAAGCCGGTTGAAAACATGGAAGAGACAGTATGGACTTCTGAA GGAAATGCTCTATCAAGGGGGATTTAAATGGGATGAGGAACGTAAGATTGTTGTTGCAACTGACTCAAAATGGAATGAAT ACATTAAGAAACATCCAGCTGCTAGGCATTTGAAAGACAAACGTATCGAGAACTACAATGAATTAGGCATGATTGTTGGC AATGATCTAGGTGGTGGATATTGGTTTGAAGAAGACTGTGAGAGGCTTGATGTAAATCTTCCTCCTAACTCAGAAGAGCA TGCAGAAACTCCAGCACTGTTGTTAGCCGATGAAGAGATGAGCCTTGACAATGCAAGTGATGAAGTGCAGGGTTCATCTG AGTCTGAGCAGACAGTGGGGGCTAGGCCTTCATCGTCATCACTTTCAAAGCAGCCATCCAAAAGAAGACGAACCGGTGAT GTGATGCTGCAAATGATGAGTGTAATGGCTGAGGATATCAGTCGGATAGCTGATGCATTGACTGAGAGTAACAAGACGTC ATGCCTGGAAGAAGTGGTCAAAAAGGTGCAGAATATTCCTGACTTTGATGATGATCTCATCATTGAAGCTTGTGAATATT TATGTTTTGATGAGAAAAGGGCATTGATGTTTCTGAAATTAGATGAGAGATTAAGGAAAAAATGGCTGTTGAGACGACTT CGTGGTTAA
Protein sequence (LotjaGi6g1v0186200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGMHPKVYQTRSSTGNERVKYIVWTSEMDDCLTEVLAEQVKKGNKLDNMLKPAALEAAVEALNENFGMYLSKGHIKNRL KTWRKQFVVLKELLAHRGFAWNKTQKMVVADDSVWNDYIKAHPDARAFRAKSIENYDKLCIVLGNDDTAASLSDSVTEID VNFSVDKVDPDLVILSEIQTDGNLPKNLRWTEEMDRWLGKILVEQVRKGLKIDKVFQTEAYDSAVSAMNAKFGLHLTKGN IKNRLKTWKRQYELLKEILSHDGFKWDEAKKMIAADDPTWNEYIRTHPDARSFRARVFENYEQFCTIFGHFTEHLHFDES VHCDESAPCDEPMEVASVCPVSYYSNAKDPGKQIRWTSDMDSCLSEILVEQIKLGNRIDNKLKPSALEAAVLAINEKFQL YLVKEHVKNRLKTLKKQYDVLKELLGKSGFEWDEKRKMVIADDSVWNEYIKINPDARLLKGRIIRNLNELYIIIGHGDPL DSSMDGARAIMCMTADGVGEAQETNNRGTYNRTPKGKDVTWTDEMDRCLTELLVKQVMLGNKLEKNFKTSAYVAVLIVLN ERFGLNLTIENVVSRLKTWKRQYGLLKEMLYQGGFKWDEERKIVVATDSKWNEYIKKHPAARHLKDKRIENYNELGMIVG NDLGGGYWFEEDCERLDVNLPPNSEEHAETPALLLADEEMSLDNASDEVQGSSESEQTVGARPSSSSLSKQPSKRRRTGD VMLQMMSVMAEDISRIADALTESNKTSCLEEVVKKVQNIPDFDDDLIIEACEYLCFDEKRALMFLKLDERLRKKWLLRRL RG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 161 | 158 | 6.8E-280 | – | |
| PANTHER | 4 | 161 | 158 | 6.8E-280 | – | |
| Pfam | 25 | 118 | 94 | 1.4E-23 | ||
| CDD | 71 | 130 | 60 | 0.00256883 | – | |
| PANTHER | 185 | 309 | 125 | 6.8E-280 | – | |
| PANTHER | 185 | 309 | 125 | 6.8E-280 | – | |
| Pfam | 189 | 283 | 95 | 1.2E-24 | ||
| PANTHER | 344 | 505 | 162 | 6.8E-280 | – | |
| PANTHER | 344 | 505 | 162 | 6.8E-280 | – | |
| Pfam | 355 | 449 | 95 | 5.5E-25 | ||
| Coils | 404 | 424 | 21 | - | – | |
| PANTHER | 511 | 802 | 292 | 6.8E-280 | – | |
| PANTHER | 511 | 802 | 292 | 6.8E-280 | – | |
| Pfam | 520 | 614 | 95 | 1.2E-21 | ||
| MobiDBLite | 683 | 717 | 35 | - | – | |
| MobiDBLite | 685 | 712 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0186200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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