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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0186200 |
| Transcript ID | LotjaGi6g1v0186200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|A0A072UVU8|A0A072UVU8_MEDTR Myb/SANT-like DNA-binding domain protein; Found in the gene: LotjaGi6g1v0186200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48025239..48029073) extracted from Lotus japonicus Gifu genome v1.2.
TATTTACTGTAATTCTTCTTGACTGAACTGTTCAAAATCCTGAGGGGTAGGGTTTTCTTGTTCTGACTTTCATACTGTCT GAATTGATTGATCTCTTTTTATGGATGAGACTGAATTTAAATCCCTATTGCAATGCCCTTTTTTTCCTTGCACAAAATCT ATGTCACACTTTTATGTTTGTTCATCTCGGTACCCAACAAGCAGATATCATAGCGTGTTATGTGGATTTTCAGGGATGCA CCCAAAAGTATATCAGACTCGTAGCTCTACTGGCAACGAGAGAGTAAAATACATTGTTTGGACTAGTGAAATGGACGATT GCCTCACTGAGGTGCTTGCTGAGCAAGTGAAAAAGGGGAACAAATTGGATAATATGTTGAAGCCTGCAGCATTAGAAGCT GCAGTGGAAGCATTGAATGAAAATTTTGGCATGTATTTGTCAAAAGGACATATAAAGAATCGGCTAAAAACATGGAGGAA GCAGTTTGTGGTTTTGAAGGAGCTCCTTGCTCATAGGGGATTTGCGTGGAATAAGACACAGAAGATGGTTGTTGCAGATG ATTCTGTTTGGAATGATTACATCAAGGTAATATTGTTACCTGTGACTGTGAAACTATTTGCACCCCATCAGTTTGCAGTT TTATGTTGGTTGTCTGATATTCTTCTGTTACCTGCAGGCGCACCCGGATGCCAGGGCTTTCCGAGCAAAATCCATCGAAA ACTATGATAAATTATGTATTGTCCTTGGAAATGATGACACAGCGGCAAGCTTATCTGATAGTGTTACAGAAATTGATGTG AACTTCTCAGTTGACAAAGTTGATCCAGATCTTGTTATTTTGTCAGAAATACAAACTGATGGAAACCTGCCCAAAAACCT CAGGTGGACAGAGGAGATGGACCGTTGGCTCGGAAAGATTCTTGTAGAACAAGTGAGGAAAGGCCTTAAAATAGATAAGG TTTTTCAGACTGAAGCGTATGACTCAGCTGTTTCAGCCATGAATGCGAAATTTGGGCTTCATCTAACGAAAGGCAACATT AAAAATCGTCTTAAAACTTGGAAGAGACAGTATGAGCTATTGAAGGAAATTCTGTCTCATGATGGATTTAAATGGGATGA AGCAAAGAAAATGATCGCTGCAGATGATCCTACATGGAATGAGTACATCCGGGTATTTCAAATTTTAAATTTATGCAGTT CAAAATCATGATTTTTTTACATTAGTAATCTAAAAATTTATAATTGATCAAATTTAAGTAATGGTTTTAATAGAAATAAA AAAATATAAAAATTAACAAAAGATGATGCGCTTGATGTAATAGAAACCACATGACACATTGAAAATTAGATTAGATTGGG GTAAGTCCTCACATTCAGCCATGAGAACTCAAATTTAATATGTAAAAATTGATTTAGTTCAACAATCAGATATTGTTCAT TCTTTTAGTCTGGAAGACCATTTCTTATTTATGCATATGGATTGGATCACATTAATTGAGAATTCAAGTTTGTGTAAACT TTACATTTACTCATTCTTCCTATTATGTCAGACACATCCAGATGCAAGGTCCTTTCGTGCTAGAGTTTTTGAGAACTATG AACAGTTCTGCACTATCTTTGGCCATTTTACTGAGCATTTGCATTTTGATGAGTCTGTGCATTGTGATGAGTCTGCTCCT TGTGATGAGCCAATGGAGGTTGCAAGTGTCTGTCCGGTTAGCTATTATAGTAATGCTAAAGATCCAGGGAAGCAAATTAG GTGGACAAGTGACATGGACAGCTGTCTAAGTGAAATCCTTGTGGAGCAAATTAAACTCGGCAACAGAATTGACAACAAAT TAAAACCTTCTGCACTGGAAGCAGCTGTGTTGGCTATTAATGAAAAGTTTCAGCTTTATTTGGTGAAAGAACATGTTAAA AATCGTCTGAAAACGTTGAAGAAACAGTATGATGTTCTGAAAGAACTTTTGGGCAAGAGTGGCTTTGAATGGGATGAGAA GCGAAAAATGGTCATTGCAGATGACTCTGTATGGAATGAATATATCAAGGTACACATAGACCTACTTTTAATTTCTACCT GGCATTTGTTTTAGCATAATGATATTATTGTGGAACTGATGTAAGTAAACCTTTCTGGAGCAGATAAATCCTGATGCTCG GCTTCTTAAGGGACGAATTATCAGAAACTTGAATGAATTGTACATAATTATCGGCCACGGTGATCCACTGGATAGTTCCA TGGATGGTGCTCGTGCTATCATGTGTATGACAGCAGATGGTGTTGGGGAAGCTCAAGAGACAAATAACCGTGGAACTTAC AATAGAACACCAAAAGGAAAGGATGTGACATGGACAGATGAGATGGATCGTTGCTTGACAGAGCTGCTAGTCAAGCAAGT AATGTTGGGAAACAAGCTCGAGAAAAATTTCAAGACCTCTGCTTATGTAGCTGTTCTAATAGTTCTAAATGAGAGATTTG GCCTGAATTTAACGATAGAAAACGTTGTAAGCCGGTTGAAAACATGGAAGAGACAGTATGGACTTCTGAAGGAAATGCTC TATCAAGGGGGATTTAAATGGGATGAGGAACGTAAGATTGTTGTTGCAACTGACTCAAAATGGAATGAATACATTAAGGT ATATTTAGTCTTCCTTCATATTAATTTTAGTTTCAGAAGTAATTCAGGTTTATATTTATTTGCTATTGCAGTACTTTAGC TAGCTCCTGATGGGTGTCAATCTCAGGACATAAACATGATTATTCGGTGATAATCTTTAGCCACTTGATATCTTCTTTAC TTGATACAGTTTAGAATTTAATCAAGGACCCATCATTATTGTGATTTGTGAGTACCAAGGCACATCAAAAGATTGTCTTT AGGCATCATGTTCCTCTTATTTTTATTTGCTTGTTAGTTTGCTTGCATTTTTTTGTTGCAGTTTGTGCTAATTGTGTGTA TTTTACTGGATTCATCATTGGCCTTTGTTTATTCAGAAACATCCAGCTGCTAGGCATTTGAAAGACAAACGTATCGAGAA CTACAATGAATTAGGCATGATTGTTGGCAATGATCTAGGTGGTGGATATTGGTTTGAAGAAGACTGTGAGAGGCTTGATG TAAATCTTCCTCCTAACTCAGAAGAGCATGCAGAAACTCCAGCACTGTTGTTAGCCGATGAAGAGATGAGCCTTGACAAT GCAAGTGATGAAGTGCAGGGTTCATCTGAGTCTGAGCAGACAGTGGGGGCTAGGCCTTCATCGTCATCACTTTCAAAGCA GCCATCCAAAAGAAGACGAACCGGTGATGTGATGCTGCAAATGATGAGTGTAATGGCTGAGGATATCAGTCGGATAGCTG ATGCATTGACTGAGAGTAACAAGACGTCATGCCTGGAAGAAGTGGTCAAAAAGGTGCAGAATATTCCTGACTTTGATGAT GATCTCATCATTGAAGCTTGTGAATATTTATGTTTTGATGAGAAAAGGGCATTGATGTTTCTGAAATTAGATGAGAGATT AAGGAAAAAATGGCTGTTGAGACGACTTCGTGGTTAAGGTAGATCGTTGAATTCTTTCATTAGCATGTTTTTAGTTGTGT ACCCCAAGTTTAGGACATGAGAGAAATATTATGGAATGACAAGCTCTTCAGCTGTTTCTGGTGTTCTCCTATTCATGTCT TTTCTCCTATTCATGTCTGCACACACACTGCTTCAGTTGTTTCTGTTGTTCTTCTATTGGCTGTTGGCATACAATTTGTT GATAACTTTACATCTCTTCACACACACAAAAACACCCGCATATTTAAAGGTGAGAGACCATCTTTCTGAGTTGGA
CDS sequence (LotjaGi6g1v0186200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACCCAAAAGTATATCAGACTCGTAGCTCTACTGGCAACGAGAGAGTAAAATACATTGTTTGGACTAGTGAAATGGA CGATTGCCTCACTGAGGTGCTTGCTGAGCAAGTGAAAAAGGGGAACAAATTGGATAATATGTTGAAGCCTGCAGCATTAG AAGCTGCAGTGGAAGCATTGAATGAAAATTTTGGCATGTATTTGTCAAAAGGACATATAAAGAATCGGCTAAAAACATGG AGGAAGCAGTTTGTGGTTTTGAAGGAGCTCCTTGCTCATAGGGGATTTGCGTGGAATAAGACACAGAAGATGGTTGTTGC AGATGATTCTGTTTGGAATGATTACATCAAGGCGCACCCGGATGCCAGGGCTTTCCGAGCAAAATCCATCGAAAACTATG ATAAATTATGTATTGTCCTTGGAAATGATGACACAGCGGCAAGCTTATCTGATAGTGTTACAGAAATTGATGTGAACTTC TCAGTTGACAAAGTTGATCCAGATCTTGTTATTTTGTCAGAAATACAAACTGATGGAAACCTGCCCAAAAACCTCAGGTG GACAGAGGAGATGGACCGTTGGCTCGGAAAGATTCTTGTAGAACAAGTGAGGAAAGGCCTTAAAATAGATAAGGTTTTTC AGACTGAAGCGTATGACTCAGCTGTTTCAGCCATGAATGCGAAATTTGGGCTTCATCTAACGAAAGGCAACATTAAAAAT CGTCTTAAAACTTGGAAGAGACAGTATGAGCTATTGAAGGAAATTCTGTCTCATGATGGATTTAAATGGGATGAAGCAAA GAAAATGATCGCTGCAGATGATCCTACATGGAATGAGTACATCCGGACACATCCAGATGCAAGGTCCTTTCGTGCTAGAG TTTTTGAGAACTATGAACAGTTCTGCACTATCTTTGGCCATTTTACTGAGCATTTGCATTTTGATGAGTCTGTGCATTGT GATGAGTCTGCTCCTTGTGATGAGCCAATGGAGGTTGCAAGTGTCTGTCCGGTTAGCTATTATAGTAATGCTAAAGATCC AGGGAAGCAAATTAGGTGGACAAGTGACATGGACAGCTGTCTAAGTGAAATCCTTGTGGAGCAAATTAAACTCGGCAACA GAATTGACAACAAATTAAAACCTTCTGCACTGGAAGCAGCTGTGTTGGCTATTAATGAAAAGTTTCAGCTTTATTTGGTG AAAGAACATGTTAAAAATCGTCTGAAAACGTTGAAGAAACAGTATGATGTTCTGAAAGAACTTTTGGGCAAGAGTGGCTT TGAATGGGATGAGAAGCGAAAAATGGTCATTGCAGATGACTCTGTATGGAATGAATATATCAAGATAAATCCTGATGCTC GGCTTCTTAAGGGACGAATTATCAGAAACTTGAATGAATTGTACATAATTATCGGCCACGGTGATCCACTGGATAGTTCC ATGGATGGTGCTCGTGCTATCATGTGTATGACAGCAGATGGTGTTGGGGAAGCTCAAGAGACAAATAACCGTGGAACTTA CAATAGAACACCAAAAGGAAAGGATGTGACATGGACAGATGAGATGGATCGTTGCTTGACAGAGCTGCTAGTCAAGCAAG TAATGTTGGGAAACAAGCTCGAGAAAAATTTCAAGACCTCTGCTTATGTAGCTGTTCTAATAGTTCTAAATGAGAGATTT GGCCTGAATTTAACGATAGAAAACGTTGTAAGCCGGTTGAAAACATGGAAGAGACAGTATGGACTTCTGAAGGAAATGCT CTATCAAGGGGGATTTAAATGGGATGAGGAACGTAAGATTGTTGTTGCAACTGACTCAAAATGGAATGAATACATTAAGA AACATCCAGCTGCTAGGCATTTGAAAGACAAACGTATCGAGAACTACAATGAATTAGGCATGATTGTTGGCAATGATCTA GGTGGTGGATATTGGTTTGAAGAAGACTGTGAGAGGCTTGATGTAAATCTTCCTCCTAACTCAGAAGAGCATGCAGAAAC TCCAGCACTGTTGTTAGCCGATGAAGAGATGAGCCTTGACAATGCAAGTGATGAAGTGCAGGGTTCATCTGAGTCTGAGC AGACAGTGGGGGCTAGGCCTTCATCGTCATCACTTTCAAAGCAGCCATCCAAAAGAAGACGAACCGGTGATGTGATGCTG CAAATGATGAGTGTAATGGCTGAGGATATCAGTCGGATAGCTGATGCATTGACTGAGAGTAACAAGACGTCATGCCTGGA AGAAGTGGTCAAAAAGGTGCAGAATATTCCTGACTTTGATGATGATCTCATCATTGAAGCTTGTGAATATTTATGTTTTG ATGAGAAAAGGGCATTGATGTTTCTGAAATTAGATGAGAGATTAAGGAAAAAATGGCTGTTGAGACGACTTCGTGGTTAA
Protein sequence (LotjaGi6g1v0186200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHPKVYQTRSSTGNERVKYIVWTSEMDDCLTEVLAEQVKKGNKLDNMLKPAALEAAVEALNENFGMYLSKGHIKNRLKTW RKQFVVLKELLAHRGFAWNKTQKMVVADDSVWNDYIKAHPDARAFRAKSIENYDKLCIVLGNDDTAASLSDSVTEIDVNF SVDKVDPDLVILSEIQTDGNLPKNLRWTEEMDRWLGKILVEQVRKGLKIDKVFQTEAYDSAVSAMNAKFGLHLTKGNIKN RLKTWKRQYELLKEILSHDGFKWDEAKKMIAADDPTWNEYIRTHPDARSFRARVFENYEQFCTIFGHFTEHLHFDESVHC DESAPCDEPMEVASVCPVSYYSNAKDPGKQIRWTSDMDSCLSEILVEQIKLGNRIDNKLKPSALEAAVLAINEKFQLYLV KEHVKNRLKTLKKQYDVLKELLGKSGFEWDEKRKMVIADDSVWNEYIKINPDARLLKGRIIRNLNELYIIIGHGDPLDSS MDGARAIMCMTADGVGEAQETNNRGTYNRTPKGKDVTWTDEMDRCLTELLVKQVMLGNKLEKNFKTSAYVAVLIVLNERF GLNLTIENVVSRLKTWKRQYGLLKEMLYQGGFKWDEERKIVVATDSKWNEYIKKHPAARHLKDKRIENYNELGMIVGNDL GGGYWFEEDCERLDVNLPPNSEEHAETPALLLADEEMSLDNASDEVQGSSESEQTVGARPSSSSLSKQPSKRRRTGDVML QMMSVMAEDISRIADALTESNKTSCLEEVVKKVQNIPDFDDDLIIEACEYLCFDEKRALMFLKLDERLRKKWLLRRLRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 158 | 158 | 6.8E-280 | – | |
| PANTHER | 1 | 158 | 158 | 6.8E-280 | – | |
| Pfam | 22 | 115 | 94 | 1.4E-23 | ||
| CDD | 68 | 127 | 60 | 0.00255868 | – | |
| PANTHER | 182 | 306 | 125 | 6.8E-280 | – | |
| PANTHER | 182 | 306 | 125 | 6.8E-280 | – | |
| Pfam | 186 | 280 | 95 | 1.2E-24 | ||
| PANTHER | 341 | 502 | 162 | 6.8E-280 | – | |
| PANTHER | 341 | 502 | 162 | 6.8E-280 | – | |
| Pfam | 352 | 446 | 95 | 5.5E-25 | ||
| Coils | 401 | 421 | 21 | - | – | |
| PANTHER | 508 | 799 | 292 | 6.8E-280 | – | |
| PANTHER | 508 | 799 | 292 | 6.8E-280 | – | |
| Pfam | 517 | 611 | 95 | 1.2E-21 | ||
| MobiDBLite | 680 | 714 | 35 | - | – | |
| MobiDBLite | 682 | 709 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0186200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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