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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0192500 |
| Transcript ID | LotjaGi6g1v0192500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain protein; TAIR: AT1G07360.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40; TrEMBL-Plants: tr|A0A0B2SAY9|A0A0B2SAY9_GLYSO Zinc finger CCCH domain-containing protein 40; Found in the gene: LotjaGi6g1v0192500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48866958..48872522) extracted from Lotus japonicus Gifu genome v1.2.
AAAGGGCTCAAATCAAACAAGTATAGTGGCCCAAATAAAGCCCGCCAATAAACAAATCGGCCCGTGAGTCTCAACTCATT TTTATAGACCCGGCCCGAAAACCCACGCGTAGAGTTATTCAATTTGGATTTGTTTGGATTCTGTGATAAACACTCGCTCC TCTTTCTCTCTCGTTTCTTCTTCCTCTTTCTTCAGCTGTGACTGAAACCCTTCGATTTGGGGGAGAATCAAACACCAGGT TCCAATTGCTCAAACCCTAGAATTCCAATTCATCGAGCATGGCGCATAGGTTGCTCAGGGACCATGAAGCCGACGGTTGG GAACGCTCCGACTTCCCTATCATCTGTGAATCATGCCTCGGCGATAGCCCTTATGTTCGAATGGTTCGTCTCTTTCCATT GATTTAGGGTTTTTTCGTTGTTTTGGGGGTTATGATTGGATTGCAGGAGTGTCGATAATGATTTGATGAAATTTCATTTT TCTTTAAATTGTTTTGTTTGTTGAGGGATTTTAGGTTGAAGGAACAGTTGAATCAGATCTTGCTTAGTGGGTTTTATTTT ATGCTGTAGTTTGGAATAGGGAACCTCATTTGAGGACCAACTATTTTGAATTGAAGAGTTGGTTTTCCAAGAGCTGTAGT TATCACTTTGTTGTTTGCAGTGTCTTTATTATACATTATTGATAATAAATCTCTTGATACTAATGGCGGTTAGCGTAGCG TAGTGGCAAGCCTAAAAACGCTATTTCGATCGCTATTGGGGCGCTATAGTGGTGAATAGTGGAGTAGCACTGGAGGTGAA CCTCCAAGGCGCTATGCTATTGTGCGCAATTAACAAGCTTGGTTTACATTAAACCTTTATTCTTATTGAGGCAAAAAATG GTCTAAACATGGAACTCTGAAGCACTATTGCTTAATTCTTCTATGAATTTTCATATGAAAGGAGTAGTGTTTTGTTTTAT TTTATTTTTTCCCCAGTTTCAGTGGAATTGGAGATCCTAAGAACTAAAACTGAGCAGGTTATGTTGTGGTCATTGTCTTA TTTGGCAAGTTAGAGCTTAAAAAGTTTTTTGAGATTATTTTGTCTTGGAAATACGGAACATCAAACTTTTCGACTCTGGA GTAGTTAATATTGAAAGTACCGCTTTATTATGATGGTTTCCTGGTGCACTTTAAGAAACTGAAGTTCATTGATATGTATG GTTAATGATTTAGATTTCAGCATGTTTTGTTGGGGATGAGATAGTGTGAATCCAATGGTTTGATTTAACTACTTTGTGTT ATGTTTATTTGTGGATGCAGACAAAAGCCGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTTACTGTTTTTAGA TGGAGACCTGGTCGGGATGCAAGATATAAGAAAACTGAGATCTGCCAGACATGTAGTAAATTGAAAAATGTTTGTCAAGT GTGCCTTCTGGATCTTGAATATGGACTTCCAGTTCAAGTCCGGGACACAGCTCTCAGTATCGATTCCAATGATGCAATTC CAAAGAGTGATGTTAATAGGGAGTTTTTTGCTGAAGAGCATGACCGCCGGGTATGTTTTTTTATTTATATAATAAGTCAT ACTTATAGCTGGTGATAGTTGAACTAATTAAAGATTGGCAAAAGAATGATGTTTTGGAGTTGCAATTATTTCAAGATCCG AATTGTTTGCTTTTAAGGTTGCAGTTATTGTTTCAATTTGCATATTAAAAAATCTTCTCTGTCCAATCAAATACCCCATT TCACTTTTGAAATGGAAACGTCTGATATGCATGTTTTGCAATATGCAGTATGCGTCACCTGTCTGGTAGATCTAATTTCG CAACTATGATGGGTGTCTTATATGAACTGTAGTTGCTGAAACTTTATTCTTGGACCACAGTTACTTGAATTGTCTCATCT CCTGTCTTTAAATCCAGCATCTGCAAAAATATGCACCATGACACTATCATTTTTACTGAGCACATCTATACTAAAATAAA AAAGATAAGTCTATCCTTGTGAACGCCTATAGTTTTAGTGAAACCTTTTGTATCTCCGAATTCTTAATCCCCACACTAGT CGTGACATTAAATCCAGCATCTGCAAAAATATGCACCATGACACTATCACTTGGATATTTTTACTGAGCACATCTACACT AAAATAAAAAGATAAGTCTACCCTTGTGAACGCCTATAGTTTTAGTGAAACCTTTTGTATCTCTGAATTCTTAATCCTCA CACTAGTCATGACTTGAATTTAAGCAATTCTAATCTCTTTATTCTCTAGGGCCACCCCCTAGTATATTATATGCTTTTTT TCAATTGAATGAAATTTCCTTATTCCTTTAATATCTTAATCTCAATCAATTAGTTGGCTCTCTATCAAAGCATCATAATA TGACTTGACTGTAATCTCTTATATCTCTATAATTTGCGAGTTTCGTATGTCACATTTGTTCTTAAAGATATAGATTAAAA TACTTCTCCATTCTTTTGGCATGCTCTTTTAGACCGCATATTCTCGTTAAACAACTCAATGACCCATTTTATGCCTTTAT TTCCTAACCCCTCCAACTGATGTGGGTTATGTTACAGAAAAAGAAGTTGAAGAATTTGTTTTTGTTTTAACTTATTAATA ATAATTTAGGACACATTCTGTACCTGCCTCTTGGGGCCCCTCCCTGTTTTTCTTATTTTTACTTGGCTTAGAGGTCTCCT TTTTATTACCTACCCTCAATTCAATGATCTCCTTGGTGTTTTGCACAATAAATGTCAATCTCAACCTACAATCTGGATGT GCTCATCTGCATACTACATAATGTCTCAGCTGCCTGCTCCTATCTGATTGACCGTACTAGCGCATCTGTTCAACTCTGTC ATTTTTTATGCTCTCTTTTGGTTTGTTTCTTCTCTGATTTTTTTATGCTCTCTCTCATAATTTCTTGTTGGTGATGAATT TAAGTTCAGTCCATAAGTATTTTAAGCGAGTTCTTTTTAGTTGACTTATGTGGATTTTGTAATATTTAGTTATTTTTTTA TTAATCACAAGTCACAACATAACATAACTTCTTTCATTTGCTTACTGAGAGCCATAAGTAATTGCGGTGCGATAGTTATT TTGCTTACTTACCAGCATATTTCCTTACCAAGGAACTCTGATTTTCACATTCTCATTTGGCACCAGCTATCAATTTCAAA TTTCCAGTGTTTGTTATCATCATCATCATCAACATCATCCAAATTGAGTACTATTTTTGAATCAGTTTGCTTTGGCCATT ACATGTTGATCTTATTATTAATATTAAACATGCTGCAGGCTAGAGCTGGTCTAGATTATGAATCCTCTTATGGTAAAGTA CGTCCTAATGATACTATACTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGAGCGCACATTTGCAGTTTCTA CATAAGGGGTGAGTGTACTAGGGGAGCTGAGTGTCCTTATAGACATGAGATGCCGGTGACTGGGGAGCTGTCTCAACAAA ATATCAAAGATCGTTACTATGGGTATGTACATTAATCATTGACTTCCTCATTTCAATATTGCTTTGACATTAACTCTATT TTCTGTTATATGTGGCTTAAGTCATGTATTTTATTGGGTTTAATTTTTGGTTAAATGAAAAAGCGTATCTTACCTGATGG TTCTTAACCTGTAATTGTACTTTGCTGCTTGCATCTTAATGTGTGGTGTGCGTGTGTATTAAGTGGTTGAAGGAAAATGC CTTTGATCCTCGAGTATAGCCCAAAATGATGTAGCAGACAGTCAATAGCTGACAAACATGTATAAAACTTATTGTGATGA TCAACTTCTGGTTTCTATCTTTGTAAATTGTAATCGATCATGGGTGTAATACTCATTCTTTTTTCTGTCTCATATTAACA TGCCCTTCTAATTCTTTATTTATTCTGCACGATTTCCTCGTAGTAGTTTCCATTGGTGACACTTAGCTGACCTTACCTGG TAGGTTTAAGAATTTTATTTTATTTTTTGGAAGAAAAAGATTTTTGTGACTACAGATACTGGAGCTGTTTTATTTGTGTA GTTGGTGGTGTTTTAAATTTCGCATCATGATTTCAACTTAGTTTTTCTTCAGAATAATATGCCATTCATGCTTTTAAATA TGCAGGGTGAATGATCCAGTGGCTATGAAGCTACTTGGCAAGGCAGGAGAGATGGCAACTCTGGATGCTCCCGAGGATGA GAGCATCAAAACTCTTTATGTTGGAGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATAACTTCTATGCCCATG GAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACCTACACAACCCGAGAAGGTGCAGAAAAG GCAGCAGAAGAACTCGCCAACAAACTGGTTATCAAGGGCCTGAGGCTAAAGCTTATGTGGGGCAGGCCTCAGTCAGCAAA ACCCGAGTCCGATGGCTCGGATCAAGCAAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGTTGCCTCGAGCTGTGATAT CACAGCAGCAGAACCAGGACCAAACCCAAGGAATGGTTTACTATAACAATCCACCTCCGCAGGGAAGAAGCTACTACCCT TCAATGGATCCTCAGAGAATGGGTGCGGTTACTGCAAACCAAGACAGTCCTCCTGGCGGACCTTCTGGGTCAGGGGAGAA CAAACCCGGGCCAGAGAAGCAGCCAATGCAACATTATCCCCGTCCAATGATGCCGCCTCCACCTGGCCAATATCATCATC ATCAGTATTATCCTCCATATGGTGGTTATATGCAACAACCAGTTCCCCCTTATCAACAGTATCCACCACAATACAATGCT GTCGTGGCTCCATCCCAGCCTCCAGCTGCAAATCATCCCTATCAGCATTCTATGCAACCAGGGTCTTCACAGACGGGGTC TGCACCTGCTGGGCCTGCACCAGCCGAAACTGGAACATCAGCGTCAGGGTCTCAGCAGCAATGAAATCGCCCATATAATA ATGTCTCTAGTTATGTTTAATCAGTCAGCAAGGTTTTTCCTTGAATTGACCCCATGCTGTTTTGGTTCAAGCAGTTAATT TACTCTCAACTAGCTGGATATTATTGATTGCTGCTTTGTGGCTTGAACCAGTTATTTTATGATTGATTTTGTGCTTTTGT AACTCTTAGCTTCTTGGTTAGATCATATTCAGGCTCAGCTTCAGCTTTAGTAACCTTTCACTTAATTATAATGCTACAGC TTAATGTTTTGGTAAGAGCGCATTCGAGCACAAAAAATGGTTGATGGATAGTAATTCTGTTTGTGTGGGCTGTATTTTTC TTTGTAGATGCTGCAATCGGTTCTTGATTGATCGCTGCGTTTGTTGCTTTTACAAAATGCTAGACTAGCATCAAGTAAAA TAATATCCACAATTGACATTTGATTATAATATTAAGAAAGTAATAATACCGTGGTTAACTGTTTTCACAAACTGTTTGAC AACCCAACATGAACTGGTGTTGGGTGATCAAAGGTAGCCTCTTTC
CDS sequence (LotjaGi6g1v0192500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCATAGGTTGCTCAGGGACCATGAAGCCGACGGTTGGGAACGCTCCGACTTCCCTATCATCTGTGAATCATGCCT CGGCGATAGCCCTTATGTTCGAATGACAAAAGCCGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTTACTGTTT TTAGATGGAGACCTGGTCGGGATGCAAGATATAAGAAAACTGAGATCTGCCAGACATGTAGTAAATTGAAAAATGTTTGT CAAGTGTGCCTTCTGGATCTTGAATATGGACTTCCAGTTCAAGTCCGGGACACAGCTCTCAGTATCGATTCCAATGATGC AATTCCAAAGAGTGATGTTAATAGGGAGTTTTTTGCTGAAGAGCATGACCGCCGGGCTAGAGCTGGTCTAGATTATGAAT CCTCTTATGGTAAAGTACGTCCTAATGATACTATACTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGAGCG CACATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGGGGAGCTGAGTGTCCTTATAGACATGAGATGCCGGTGACTGG GGAGCTGTCTCAACAAAATATCAAAGATCGTTACTATGGGGTGAATGATCCAGTGGCTATGAAGCTACTTGGCAAGGCAG GAGAGATGGCAACTCTGGATGCTCCCGAGGATGAGAGCATCAAAACTCTTTATGTTGGAGGACTTGATGCTAGGGTCACT GAGCAGGATTTGCGGGATAACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTT TGTAACCTACACAACCCGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCGCCAACAAACTGGTTATCAAGGGCCTGAGGC TAAAGCTTATGTGGGGCAGGCCTCAGTCAGCAAAACCCGAGTCCGATGGCTCGGATCAAGCAAGGCAGCAGGCATCTGTG GCTCATAGTGGATTGTTGCCTCGAGCTGTGATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAATGGTTTACTATAA CAATCCACCTCCGCAGGGAAGAAGCTACTACCCTTCAATGGATCCTCAGAGAATGGGTGCGGTTACTGCAAACCAAGACA GTCCTCCTGGCGGACCTTCTGGGTCAGGGGAGAACAAACCCGGGCCAGAGAAGCAGCCAATGCAACATTATCCCCGTCCA ATGATGCCGCCTCCACCTGGCCAATATCATCATCATCAGTATTATCCTCCATATGGTGGTTATATGCAACAACCAGTTCC CCCTTATCAACAGTATCCACCACAATACAATGCTGTCGTGGCTCCATCCCAGCCTCCAGCTGCAAATCATCCCTATCAGC ATTCTATGCAACCAGGGTCTTCACAGACGGGGTCTGCACCTGCTGGGCCTGCACCAGCCGAAACTGGAACATCAGCGTCA GGGTCTCAGCAGCAATGA
Protein sequence (LotjaGi6g1v0192500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVC QVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREFFAEEHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRA HICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMATLDAPEDESIKTLYVGGLDARVT EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELANKLVIKGLRLKLMWGRPQSAKPESDGSDQARQQASV AHSGLLPRAVISQQQNQDQTQGMVYYNNPPPQGRSYYPSMDPQRMGAVTANQDSPPGGPSGSGENKPGPEKQPMQHYPRP MMPPPPGQYHHHQYYPPYGGYMQQPVPPYQQYPPQYNAVVAPSQPPAANHPYQHSMQPGSSQTGSAPAGPAPAETGTSAS GSQQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 436 | 436 | 1.0E-255 | ||
| PANTHER | 1 | 436 | 436 | 1.0E-255 | – | |
| Gene3D | 148 | 199 | 52 | 2.4E-6 | – | |
| Pfam | 148 | 194 | 47 | 8.4E-7 | ||
| SMART | 157 | 183 | 27 | 7.2E-6 | ||
| ProSiteProfiles | 157 | 184 | 28 | 14.126 | ||
| SUPERFAMILY | 159 | 182 | 24 | 6.75E-6 | ||
| Gene3D | 214 | 310 | 97 | 8.9E-19 | ||
| SUPERFAMILY | 221 | 309 | 89 | 1.9E-20 | ||
| CDD | 227 | 300 | 74 | 5.05496E-44 | – | |
| ProSiteProfiles | 228 | 301 | 74 | 15.306 | ||
| SMART | 229 | 297 | 69 | 6.1E-17 | ||
| Pfam | 230 | 288 | 59 | 1.2E-12 | ||
| MobiDBLite | 301 | 321 | 21 | - | – | |
| MobiDBLite | 306 | 320 | 15 | - | – | |
| MobiDBLite | 334 | 485 | 152 | - | – | |
| MobiDBLite | 334 | 354 | 21 | - | – | |
| MobiDBLite | 365 | 379 | 15 | - | – | |
| MobiDBLite | 393 | 411 | 19 | - | – | |
| MobiDBLite | 448 | 468 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0192500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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