Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0193200 |
| Transcript ID | LotjaGi6g1v0193200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Double stranded RNA binding protein 3; TAIR: AT3G62800.1 double-stranded-RNA-binding protein 4; Swiss-Prot: sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1; TrEMBL-Plants: tr|A0A0C3VJP6|A0A0C3VJP6_MEDTR Double-stranded RNA-binding motif protein; Found in the gene: LotjaGi6g1v0193200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48960672..48963892) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAATGGAGCTTCATTGTTTGTGTTTTGTTTTGCTGTGTGTGTGAAGGACTAAAACTGAAAAAGAAAATGTACAAGAC AAAGCTACAGCAGGTATGCCACCAGAGACGGTGGAGTTTGCCCAAATACTCTGCCAAGAGAGATGGTCCGGATCATATAC CAAGGTTTAAGGCCTCTGTCATAGTCAATGGCACTACCTTCACTTCCCCTGGCGCCTTCAGGTCCTCCAAAGAAGCTCAC AACCAAGCTGCAATGGTTGCCTTCCTTAGCTTTGTTCCTGCTCCACCTGGTACCCCCATCTCTTTCTCTTTATGGGTTTT GTTTGTTTCAGGGAAAAGTTTCTTTCTTTTAAGTTTTTTTTTTCTTGCTTGGGATGATAGTTGTTGAAAGTTGAAAACTT GAAATGGGTTCTCTGTTTGTGTTTGAGTCTTTGGGTGCACAGATAAAATACACTCATAGCTGATTGATTGCAATTTTTGT AGCTATTTTTTTTATCTATTGGAGTTTTTAGCTCAGAGTTGTATACTTTTTGAGTGAGTATGAGAGAAAAGCCAAGTGAC ATTTCAAGTTGATTGATCAGTAATGGATGATATATGTTCTGGTGTTGTTTCATGTTTGAAGGGTTTTATGTTTTTAAATG GGTGATAACTTCTTTGTTCTTGGATATCAGGACATTTTCTTTTTAATCTTCAAAGATTTCATGATGGATTAGGAATTAAT GACACTATTTAAATAAATTCTGTGAGAAAGTTTCTTGTGCTTTACTATTATTGCCTTGAACTGACAAAAGGATGAGGAAA GCAATAAGATTATAGGAACTAGTAATGTTACATCAATTTCATAGGCTAGAAGTTATGGCCCTATACTTATACATTTTTAC TCCAAATTTGCGCTTTGTATTGTGACTATCTAGGTTCTTCAACACCATCAACTGAAAATGATACTGAAGAAGAAGTTGAA GCAGAGAAACCTCAGAGCATTTCCACTCCAGCACAGTCTCCAATCAATATAGATGGTGAAGAAAACTGTTTCCTCATTCC CTTTCCTGTTTCCTCATTAACTTTCGATATCTTTTGGTGCTAATTTTCTAATGAAGAAAACTGATACTTCTAATTGATTG CTTTAAGTGACTATTTTCATTTTCCCTTTCAACATATTGCTAACATTGGCAATCAACATATAGATACGGTTCCTTTGGGC AAAAGCCATCTGCAAAACTATGCCAGAGGGAAGAATCTTGATCCACCTATTTTTACAGTTAAAACTGTAGGGCTGTCTCA TGACACTCACTTTAAGGCTACAGTTGTAGTTGATGGAAAATCCTTCGAAAGCCCTGCACTTTCCAAAACTATCAAAGGGG CTCAACAGGCTACTTCGAAAATGGCCTTGATGTCATTGTCACTCGACATCTTAAAGAAGGTAATTCTACTTGTAATTCTC CTATTTTTATTTTTTGGATGATTTAAAATCATCAAATTGATAGCTAGATGTTTAATGTTGGACAAAATTATTAATTTGGA TTTGTATGTATCCTCCTTATGCAGGGTGGCTCTGGTCCATTTAAGAGTTTACTGCTAGAACTAACACAGAGGGAAGGCTT CTGCAAACCTATATATAAAACTATTCAGTCTAGTTCTTCTCATATGAGAACTTTCTACTCAACTGTGGAAGTAGAGGATG AGGAATTTCATGGAAAGGCGAGTAAATCCAAGAAAGAGGCAGAGCAGGATGCTGCTAAGATTGCTTACATTGCTTTAAAT GAGTGTAAGTTGATTTTCCTTACTCAAATTTATATCTCTCATTTGCTTTCAAGCATAAAGAACCACACTGAGGGAAAATT TACCATATCACTATAAGTTTGACCCTGATTTTTGTGTATCAGAAAGACTCAAAAATATTGTATGTGTCTAGTCTTTCCTA TCCATGCATAGCTGTACATAAGTGCTTAGGTGCTGCAATATTTTGAGTAGAGCTTTGAATATTTGTATTTACCTTTCTAC TCATATATGGATGTTAAAAGACAACAACATTTTATTATCTAGTTGATCGAAATTAGAGGTTTTTCATTTCCTCTAAGGCA TGGCATAATCATATGGGCATCAACATTTTGTTTCCTCCATTTACAATTATCTTAAAGAGTTCTCAATAAAATTGCCACTA TGAGGTTAAAAGTTGATCATTATTTTGCCTGCTTGTGTGTTTTAGATATTACTTTACATTGATGAATTGAAAAGATTATT TTGAAATGATACATGAAGTGGTAAACTTGAAATTGTTAGGCGCATGAAGCTGCCTTGATGAATTTGGGGAGGTCATTATG TACCCTATAACATAGTTGGTTTCTTTTGAAAAAAAAAAGATAAAAAATATTGTTTCTTTGGAACTCATCTAATCTAAAGA AGATTAATCTCCACCCCTAATCTAAAGGAGATTAATCTCCACCCCTACACAATGACATTATTTGTGATTGCATTTTAAGG GTGGAAGATTAATCTTCTTTAGTTTGCCAATTTTTTTTTTCAAAAGGGACCGACCATATTTTACGGTACATACATTGGCC TCCCTCAACACTATGAAGACCTAATATGTATTTTACTATAATTAAACCATCATTTGTGCCATGCGCAGGTGGACTTCACA AGTATACTTCCCTTTCTTCCTATCTCAGAGAAAATAAAGCATTGCCATCAATTCACAATTATATGGAGACCCTCAACCAT GAAGGTTTGTTTCCTCAACTTTATAGCCAAGATCATAGCTTGCTTATGAATACTTCTTTAAATCACTATGGAACATTTAT TTAAGTCATTGTGTTCTAACAGATGAACTTATGGACCTGGACTTTAATGACACATTACCTTCTAGTGTCAAAGTCAGCAA TGAAGAAAACAACCCATTTTATCTACAGTCCACTAAGAAAAGCATGATGAGCAACAAGGCAAAGGCTCCTGAAACAAGTA GCTACCTCCTCTGCAACAAGTTCAAGGTGTATACATCTTACCCAAATGTAGCACTTCCTGAGGGGACTATAGTGCTACCA ATTAGTGACAGTAAGTGGATTGCTGCTGGAATTTCCAAATGAGAAAGACAATTGATTTGACTTTGCTATAAGTAGAAAAA ACTAAAACTCTTGATGAGTTATTTATAATGGAGGCATTACTATTAACAGCTTAAACATGCTTTTACATTCAAACGTCTAT GGTATAAAATATGAAGTCAAG
CDS sequence (LotjaGi6g1v0193200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAAGACAAAGCTACAGCAGGTATGCCACCAGAGACGGTGGAGTTTGCCCAAATACTCTGCCAAGAGAGATGGTCC GGATCATATACCAAGGTTTAAGGCCTCTGTCATAGTCAATGGCACTACCTTCACTTCCCCTGGCGCCTTCAGGTCCTCCA AAGAAGCTCACAACCAAGCTGCAATGGTTGCCTTCCTTAGCTTTGTTCCTGCTCCACCTGGTTCTTCAACACCATCAACT GAAAATGATACTGAAGAAGAAGTTGAAGCAGAGAAACCTCAGAGCATTTCCACTCCAGCACAGTCTCCAATCAATATAGA TGATACGGTTCCTTTGGGCAAAAGCCATCTGCAAAACTATGCCAGAGGGAAGAATCTTGATCCACCTATTTTTACAGTTA AAACTGTAGGGCTGTCTCATGACACTCACTTTAAGGCTACAGTTGTAGTTGATGGAAAATCCTTCGAAAGCCCTGCACTT TCCAAAACTATCAAAGGGGCTCAACAGGCTACTTCGAAAATGGCCTTGATGTCATTGTCACTCGACATCTTAAAGAAGGG TGGCTCTGGTCCATTTAAGAGTTTACTGCTAGAACTAACACAGAGGGAAGGCTTCTGCAAACCTATATATAAAACTATTC AGTCTAGTTCTTCTCATATGAGAACTTTCTACTCAACTGTGGAAGTAGAGGATGAGGAATTTCATGGAAAGGCGAGTAAA TCCAAGAAAGAGGCAGAGCAGGATGCTGCTAAGATTGCTTACATTGCTTTAAATGAGTGTGGACTTCACAAGTATACTTC CCTTTCTTCCTATCTCAGAGAAAATAAAGCATTGCCATCAATTCACAATTATATGGAGACCCTCAACCATGAAGATGAAC TTATGGACCTGGACTTTAATGACACATTACCTTCTAGTGTCAAAGTCAGCAATGAAGAAAACAACCCATTTTATCTACAG TCCACTAAGAAAAGCATGATGAGCAACAAGGCAAAGGCTCCTGAAACAAGTAGCTACCTCCTCTGCAACAAGTTCAAGGT GTATACATCTTACCCAAATGTAGCACTTCCTGAGGGGACTATAGTGCTACCAATTAGTGACAGTAAGTGGATTGCTGCTG GAATTTCCAAATGA
Protein sequence (LotjaGi6g1v0193200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYKTKLQQVCHQRRWSLPKYSAKRDGPDHIPRFKASVIVNGTTFTSPGAFRSSKEAHNQAAMVAFLSFVPAPPGSSTPST ENDTEEEVEAEKPQSISTPAQSPINIDDTVPLGKSHLQNYARGKNLDPPIFTVKTVGLSHDTHFKATVVVDGKSFESPAL SKTIKGAQQATSKMALMSLSLDILKKGGSGPFKSLLLELTQREGFCKPIYKTIQSSSSHMRTFYSTVEVEDEEFHGKASK SKKEAEQDAAKIAYIALNECGLHKYTSLSSYLRENKALPSIHNYMETLNHEDELMDLDFNDTLPSSVKVSNEENNPFYLQ STKKSMMSNKAKAPETSSYLLCNKFKVYTSYPNVALPEGTIVLPISDSKWIAAGISK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 312 | 312 | 1.2E-141 | – | |
| ProSiteProfiles | 1 | 70 | 70 | 11.941 | ||
| Gene3D | 1 | 68 | 68 | 1.6E-21 | – | |
| PANTHER | 1 | 312 | 312 | 1.2E-141 | – | |
| CDD | 2 | 64 | 63 | 4.15097E-14 | ||
| SMART | 2 | 69 | 68 | 1.8E-12 | ||
| Pfam | 2 | 65 | 64 | 7.2E-14 | ||
| SUPERFAMILY | 2 | 69 | 68 | 1.54E-17 | – | |
| MobiDBLite | 71 | 106 | 36 | - | – | |
| SUPERFAMILY | 108 | 179 | 72 | 3.46E-14 | – | |
| ProSiteProfiles | 112 | 181 | 70 | 9.368 | ||
| Gene3D | 112 | 179 | 68 | 3.4E-14 | – | |
| SMART | 113 | 180 | 68 | 1.7E-4 | ||
| Pfam | 114 | 176 | 63 | 2.3E-6 | ||
| CDD | 114 | 179 | 66 | 2.2265E-7 | ||
| Gene3D | 184 | 264 | 81 | 2.2E-20 | – | |
| ProSiteProfiles | 191 | 259 | 69 | 12.111 | ||
| SUPERFAMILY | 192 | 259 | 68 | 3.3E-17 | – | |
| CDD | 192 | 257 | 66 | 2.5845E-14 | ||
| SMART | 192 | 258 | 67 | 5.9E-17 | ||
| Pfam | 193 | 254 | 62 | 5.5E-12 | ||
| PANTHER | 315 | 373 | 59 | 1.2E-141 | – | |
| PANTHER | 315 | 373 | 59 | 1.2E-141 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0193200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…