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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0193700 |
| Transcript ID | LotjaGi6g1v0193700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zeaxanthin epoxidase, chloroplastic; TAIR: AT2G21530.1 SMAD/FHA domain-containing protein; Swiss-Prot: sp|Q40412|ABA2_NICPL Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|I1NDS2|I1NDS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0193700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48996124..48998925) extracted from Lotus japonicus Gifu genome v1.2.
CATTAACTGGTTCAAGATATAGTTATCCAATCTCTTGTCACTCAAGCATTAAATGGCAGCCACATATACTCAACTCCATG TCCCATGTAATCACACCAGGAACAACCTTAATCTTTATCCTCCCATTCAATCACCAGGACCACTAGGCCAATCCATATGA GCAAATAACTAGTTTTCAATCACAGCTAACAATTCTTGCACAAATGGAAAGCATTGTTGTACAATCTCTCTCCCTTGCAA AAATACCAAAGTCTCAAGCTTGCTCTGCTTCTGTGTTGAATTCATCTCACTCCAATGCCACTTCAGTAACTTTCAGTTCA GTAACCCATCATCATCTACCCAAGTGCTTTATTTTTCGGCTACCAGGTGGTGTTAGACTGAAAGCAAAAGGAAAGGTGAA CCTGGGAGCTATAAATGCCTCAGAGGCTGCAACCCCAACAACAGAAGCTGCAGAAAGATGGCTTCTTGAACCAGTTGGTC AGTTACATCTTCCTTCTCAGTGTAGTAATCTCTGGAATTTCCTCCCTTTGGATCATATTCTGCACATAATTGATTCTAGT AAAATTGTTATGGTAAACGTGAGCTAAAATGATGTGATTTATATTTAAATACATTTATGAAAAAAGTGGTTTTTGTAAGG TAATGCCATGAAATTCAGTTGTAAAATCTGAGAATTTATTATGCTCAACCAAGAAGCTACTCTCTCTAGCTTCTAGCAGA ATTGATTTTGGGGCTGAAATCATATCTCCAAAGTGGCTACAAACTTCTATATCATCATCTAGAATTGATTTTACTCTATC ATAATTGATTCTGAAGTTCGCCCAACGTGTTACCAAACACACTATTGTACAGTTGTTGTGGCCGTAACATATAACATGCT TCTTCAAGTTCAGGGACATTCAAATTGGGATATTGTAAATCATTTTTTTTGTTTCATCTTCCCTACTATTTTGTTGGCAA TGCAAGCTTCACAATCTTACTAGATAACTTGACACAAAAAGTTCTACATGAACCATTGTGCAAAACTTTACTAATTTCCT TAGATAGATCAGCTCAATCCTTCATAATAAACAGGACTTCCTAAATTATCCCCTATAAGTATTTGTTTGAATGTGAATTT TTTTAAGTCCCAAGATTGACAAGGTGTTTCATCATGTTGGAAACAAAACCAATTATATTTTAATAGGAGATGGTGACACA AGGCACATAGGCTTCAAGGTCGATATGCCAGGTGCATATGAAATTGCTTCTGTAAGTAAATTTAGCATCAATAATCCATG TTACTGAGTATGCTTCAGCTTAAATGGCGTGTTTTGTATTATTTAGAGTGTAGTGACTGTTGGACGTGTTCCTGAGAAAG CTGATCTGGTGATCCCAGTTGCAACAGGTATGACAATTTGTTATTTATTTTGAATCTTCTAAGTTATCCTATAATTACAA GCATACATCCAACTTATGAAGACAGATTTTGAGAATTCTAAACTGGTGCTGATGGTCCATCATAGGTGGCCTAATAACGA ATCTAAAATAGACTCTAATACCATCATAGAATTCGAGCTTGACCTATGTGAGGATTGTCCTAACTTTCATGAGAGCTTTT TTTTCCTATACCTCTAGTCAATGCAGAATGTTAACAGTAGAATCATGTGAGCATAAAGACAATCAACACCCTTATTCTCT TAAAATACATGAAGATTGTGGTCTATGGATGAATGTTTGTCTTGTGATTAATTCCCTGTATAAGTACTCTAGATAAGCTC CTTATTCAGAGTGTCCCATGCTTTGTTTCTCTTTCATAGAACCACTCAGTTAACCAAATTCAAATATAATTATTTTCCAT TTAAACCTTTTTAGTTCTCTTGAATTTCTTCAAACATGGACCTCGTTTTAAATTTTAACTTGTACTTGTAGTGTCGGGTG TGCACGCACGCATTCAGAAGAAACCAGGGAAACTTCTTGTTACAGATTTGGATAGCACCAATGGGACGTTCATTGATGAC AAGCGGCTGAGACCTGGAGTAATTTCACCTGTATCTTCTGGGAGTCTTGTTACATTTGGTACCTACTCTAACCATTTCTA TGTATTTGCTTGTTTTCCTTTTGCTGTTAAATAAATTTTGCCATGTTTGATCTCATTATCTACATAATCATGTGCTCTTA ACTATAGAAGGATCTTCAAAATTACCATCAAACTCAAACTCAATGAAATTGTACTTAACCACAATTTGCAATGAGGACAA CATAATGAGTCTCAACTAGCTAATACTGAAACTAGACACAATTTCATGATTAAACTTTAATTCTTAAATTGTGGATTGCT TAGTGAGTGCTACATTTTATGAATCTTTGAAGTTTCAGCTCAACTTAGCTACTTAATCTTTGTCATTATCATTGCTAGGA GACACCCATTTGGCCATGTTCCGAGTATCAAAGGTTGGAGATGTGAAGGCTGCTGACAGTGATACAGCAGAAGAAACTGA AGGTGAACTAGACCCTGATAACAAATCTGATGATAATACTGAAACAAGTTGAAATTCTAGTTGTAGAGTGCACACTTTGT TTTTGTATAGTTAAAATTAACAAATGAAATTTTCGGCTTTGATCATTTGAAAACATTTATGTATAATGCAAACTTTGTTT TGCAATGCCATTTTGCTATAAGCATGTTGTGTGCTTGATAAAATGTCCTGCTCAATATAGTCTGACTAGAAAGTGAAACT AATCACTAACTGAAGGGCTTAAAATTTGAGGAAAGTTCATAAGAACTGGATCCTACTCACTAATGGAAAATTTTCAACCA GG
CDS sequence (LotjaGi6g1v0193700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGCATTGTTGTACAATCTCTCTCCCTTGCAAAAATACCAAAGTCTCAAGCTTGCTCTGCTTCTGTGTTGAATTC ATCTCACTCCAATGCCACTTCAGTAACTTTCAGTTCAGTAACCCATCATCATCTACCCAAGTGCTTTATTTTTCGGCTAC CAGGTGGTGTTAGACTGAAAGCAAAAGGAAAGGTGAACCTGGGAGCTATAAATGCCTCAGAGGCTGCAACCCCAACAACA GAAGCTGCAGAAAGATGGCTTCTTGAACCAGTTGGAGATGGTGACACAAGGCACATAGGCTTCAAGGTCGATATGCCAGG TGCATATGAAATTGCTTCTAGTGTAGTGACTGTTGGACGTGTTCCTGAGAAAGCTGATCTGGTGATCCCAGTTGCAACAG TGTCGGGTGTGCACGCACGCATTCAGAAGAAACCAGGGAAACTTCTTGTTACAGATTTGGATAGCACCAATGGGACGTTC ATTGATGACAAGCGGCTGAGACCTGGAGTAATTTCACCTGTATCTTCTGGGAGTCTTGTTACATTTGGAGACACCCATTT GGCCATGTTCCGAGTATCAAAGGTTGGAGATGTGAAGGCTGCTGACAGTGATACAGCAGAAGAAACTGAAGGTGAACTAG ACCCTGATAACAAATCTGATGATAATACTGAAACAAGTTGA
Protein sequence (LotjaGi6g1v0193700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESIVVQSLSLAKIPKSQACSASVLNSSHSNATSVTFSSVTHHHLPKCFIFRLPGGVRLKAKGKVNLGAINASEAATPTT EAAERWLLEPVGDGDTRHIGFKVDMPGAYEIASSVVTVGRVPEKADLVIPVATVSGVHARIQKKPGKLLVTDLDSTNGTF IDDKRLRPGVISPVSSGSLVTFGDTHLAMFRVSKVGDVKAADSDTAEETEGELDPDNKSDDNTETS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PANTHER | 7 | 212 | 206 | 2.9E-69 | – | |
| PANTHER | 7 | 212 | 206 | 2.9E-69 | – | |
| CDD | 85 | 194 | 110 | 4.78755E-19 | ||
| Gene3D | 91 | 196 | 106 | 1.2E-20 | – | |
| SUPERFAMILY | 108 | 190 | 83 | 2.49E-21 | ||
| SMART | 115 | 166 | 52 | 2.5E-12 | ||
| ProSiteProfiles | 116 | 166 | 51 | 14.031 | ||
| Pfam | 116 | 183 | 68 | 7.7E-15 | ||
| MobiDBLite | 199 | 226 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0193700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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