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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0197900 |
| Transcript ID | LotjaGi6g1v0197900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial; TrEMBL-Plants: tr|K7L326|K7L326_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0197900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49451868..49455153) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAGTTGGACCCCAAAACCATTTTGAAGTGAAAGGGTTAAATTGGAATCAAAACCTAATTGAAAAAGGACCTAAAGAG TAAATTCACCTTGTCACTAATCTAATAGGAGTAACATATGTTGACTATCATTTTTTTGTTGTTGATTGTTGAGTGTTGAC TCACATTGGAGGATCATCAATATGAACAAAAAGCCTCTCACGTTTCTTGCCACAACCATTTCGGCCAAGTTCAACGTTCC TCCTCGATTCTACTGTTCTCCAACCTCGCCTCCCTCTTCTCCTTCGTCCAACAAGCTCTTTGTCGGAGGTACCTCACTCT CTTTCTTCCTCGCCTGTTATGCTCAATCTCCATTGTTAACACTGACATTGTTTCAGGGCTGTCATGGTCAGTTGACGAGA AGTCCCTCCAAGACGCTTTCTCTTCGTTCGGACAAGTCACTGAAGGTAATGTGACTCTGAATAGCTTTCTGGGTCTTTGT TCTCTTGCCCATTTTCGCAAGTTTCTGATATGCTGCTATGTGTTCGACGTTATGTCTCAATGAGTTGTTTTTGAGAAATT GGAACCAATGAATATGTGTAGAACAGTAGAAGTGTCATTTTGGAAGGATATCTATCTATCTTGTAGAAATGTTGCTTTGA TGGCAGTGTTTTTATTGAAACCTGCAAGGGAGTCCTAACTCACTATGAAAGTAGTTAGTTGAAATTTTATCTTAGGTGAA AATTTGGTTGGAGTTATTCCAGAAATGGATAAACTAGATTACTAGAAACTTATTATTGTCTGAATGAATTATGCAAAGTA AAATATGTTACAGAATAATGAAGCAAGAAAGCTTAACACCCTCCTATAGAGGATTAGTTTCATATTATGTTTGAAGTGCA TTTTAATAGTTTATCTGAAGGATGTTTTCTCACTTCCAAATCCAATGGTGTTGTTGAGCTATCTCAACAAATGGTGGAAG TAAGGAATTAACATATAAATAGCAGTAGATCAAAATTACTGGTATAAGAGGATATTATAGCTGTTGTAAATATTTATTAT TAAAAGAAATATTAAGTTCTTGCTCTACCTTGGGTATGTTGCAAGTTCTGGCATCTTCTGTGCTTTGGATGCTTGTAATA AAAGAAAATATCTATCCAGTTCAGTATTGTTTAATCCATACACATCTGACAATTCCACCGTATAACTCTTGCTATGTTTG GGCATTGCATATGGTCTATAAATGATGAGCTTGTAGTTGCCATTAAGTTATTTTGTAAACTCATGGAACACCCTTTTCAT GGGTTCACGTTCATTCAAGGTACAAACAATTATGTTTGATTCAGCTATTGTCTCAACCATATGGTCTAAATCAATGGGGT CCTTTTCTTGTAGTGAGGATCGTGTATGATAAAGACAGTGGAAGGTCTAGAGGCTTTGGATTTGTCATCTTTTCAGCTGA AGATGATGCCAAATCTGCAAAGGATTCAATGAATGGAAAGGTCAGATGTTATGAATATCAAGTATGTATGTTTGGATACA TAATGAAAAATCACAGTGGATTCCTTTACCTTTTGAGGCTGTTCACCGTGATTTTGGCTTCACGGTGGTTTTTTCGTCTT GTATTCAAACATGCACTACATCATTGCCTATTTATGTTCCTTCTTATGGTGATGTTTTCTCTGCAGGCATTGTTAGGTAG ACCATTGAGGATTAGTTTTGCTCTCGAGAAGGCCCGTGGTGTACCTATTGTAGTTCCCAGATTTTCAAATATTGGAAATT TAAACAAGCACTAGTTCAATTTGGCTTATGAAATTTGTTAGTGACTCTAAATCATACTTGAAATTTATGTGAGTAAAGTG AAAGTGTATTGAGCCTAGAATTTGTATTCTAACTTCTAAGTTAAGAGTATTTTAATAATTTTACCCCAAACACTGATGCT TTCATTTAAAATTTAACCCACTTTCATGCATAGCATATTAAAAATTGTCATTGTATTACGATCCAACATCCTTATTACAT GTATCGAGTATGTTAATAGAGAAAATACTTATGTTGTCAAACATCTTAGGTAAGCAAAATATCACTTATCTAATAGAAAC AATAACATTTATACAAAAATTAAAATAATATTGGCTTCTACAAACATTACTTTAGTACTTTCACTGTAGAATTTAAAAGG AAGCAACTTGAAGGGAATCAGAATCATGAACCAACATTTTGTTCTCTAATTGCAAGAATTTTGCAAAAGCACCAACTAAT GGTGCTGTATTATATGTACATGCCTCAGTCTGCACATAGTTATTCCTTTGATCCTCAAAATTGTCTTCATGATCTGGCCC TCCAACCAAAGCCCCAACTAGAACATTAGGATTTGGTCCTTGCATGCTGTACCAATTATCATAGCCTTGAGTGCACCCTA TGAACCCTTTACTCTCTCTATATGGCACAATGGATGCCCCTCTATGATGGACCATTTTGGGGTACCTAGGCCCAAAGCCC ACTAAGTAGCTCATGTTAAGTGGGTTTAGGCCCAGAATGTAATCAACTTGTGACTTGGCAAAACTGAGAATTTCTTCATG GCTGACAATACCATCATGGCAGTTTAGCTTCTGATTTTTGCTTTGGAGGAAGTCAGAGTATACTGTGAGAAGAAATGCTG CTGTTGAAACGTATTGCATGTTGTTCCATTGTCTGACATATAGCAATCCTGCTGGTGTTCTTGCCACATTGCTGCCATTG TTTTTGTTGAGACATGAACATATGTAGAACTCTGCTTTTGATCTGTACTTTTTGAGTATATTGACATGCTTCTTGTGTTT TTCTTCCATCAAAAACTGCAAAAGATACAAGATCTTAATTACTTTTACTCTATCATGAGAAACGCTAGAAACACTGTTTT GACGCATTCTTTCCAACACATACTCTTTTATTGTTTGAAAATCATGTGGAGTCATCAAGTATATGGGTCGCACTCCAAAA CTTATAGATCACTTTCCCATTTATTGTCTCCCACATGTGTTGCAAATAAGGAAATGTAAATATAACCCAAACTCTTTACA AGTGCTCATGCAATTTTGCCATGTTCAACTGATTTAATTGAACCCTGAAAGTGGGGCACACATCTGCAATCTCTTACTTC ATGAGTTGAAGAAGGGTTGAGACATTTCAATCAGATAAGCAATCAATGCAGTCCATTATTATCTTTTTGACTGTCTATGC CTATATATATTTATGTAACTTTCCCTTATAAGAAAAAAAAAGTGACAGAATTGAAGCAGTAATATTGAAAGACAGAAAGA TGTTCA
CDS sequence (LotjaGi6g1v0197900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAAAAGCCTCTCACGTTTCTTGCCACAACCATTTCGGCCAAGTTCAACGTTCCTCCTCGATTCTACTGTTCTCC AACCTCGCCTCCCTCTTCTCCTTCGTCCAACAAGCTCTTTGTCGGAGGGCTGTCATGGTCAGTTGACGAGAAGTCCCTCC AAGACGCTTTCTCTTCGTTCGGACAAGTCACTGAAGTGAGGATCGTGTATGATAAAGACAGTGGAAGGTCTAGAGGCTTT GGATTTGTCATCTTTTCAGCTGAAGATGATGCCAAATCTGCAAAGGATTCAATGAATGGAAAGGCATTGTTAGGTAGACC ATTGAGGATTAGTTTTGCTCTCGAGAAGGCCCGTGGTGTACCTATTGTAGTTCCCAGATTTTCAAATATTGGAAATTTAA ACAAGCACTAG
Protein sequence (LotjaGi6g1v0197900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKKPLTFLATTISAKFNVPPRFYCSPTSPPSSPSSNKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGF GFVIFSAEDDAKSAKDSMNGKALLGRPLRISFALEKARGVPIVVPRFSNIGNLNKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Gene3D | 21 | 119 | 99 | 9.4E-33 | ||
| Phobius | 26 | 136 | 111 | - | – | |
| SUPERFAMILY | 26 | 119 | 94 | 6.85E-33 | ||
| ProSiteProfiles | 37 | 115 | 79 | 21.31 | ||
| SMART | 38 | 111 | 74 | 1.3E-28 | ||
| PANTHER | 39 | 107 | 69 | 7.7E-32 | – | |
| PANTHER | 39 | 107 | 69 | 7.7E-32 | – | |
| Pfam | 39 | 109 | 71 | 1.0E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0197900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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