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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0199500 |
| Transcript ID | LotjaGi6g1v0199500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor family; TAIR: AT1G16060.1 ARIA-interacting double AP2 domain protein; Swiss-Prot: sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060; TrEMBL-Plants: tr|A0A151UF47|A0A151UF47_CAJCA AP2-like ethylene-responsive transcription factor family; Found in the gene: LotjaGi6g1v0199500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49617568..49619524) extracted from Lotus japonicus Gifu genome v1.2.
GATTACTTCAGTCTATCTTGGTAAGTAGATATTAATTACATATTGAACATTACATTATCTGCATATTATTAAGAGCAATT AAAACCAGAAGAATCATCCATGTTACTAATTACAGAAGGTTGTGTTTTATAGGTGCTTATGATGATGAAGAGGCGGCAGC ACATGCTTATGATCTTGCAGCATTGAAATATTGGGGTCCAGATACCATTCTCAACTTTTCAGTACGTATCTTCTAAACAA TTTGGATTCTTGCAGTCAGAAAATACTAAATTCACACCCTTAAAGTATTTGAGTCATTATATTAAAATTGGATGAACTAT TTGATTGTAGTTATCGACCTACCAGAATGAATTGAATGAAATGGATGGTCAATCAAGGGAGGAGTATATTGGATCATTAA GGAGGTAAAGCTCTTGATGCTTCTTTTACAATCACTTTTAAAAAAATTCTATTCAAGCATTGTTCTGAAAATTAAGAATC TTGCAGGAAAAGCAGCGGTTTTTCTCGTGGTGTCTCTAAATACAGGGGCGTTGCAAGGTACTATATACAAGTACTATCAA TGCATAGTAATTGAACTCTTAAAGAAAGCACACATCATTCTTATTAAAATTTCATGACTTCGATTTTGAATGTACAGACA CCATCATAATGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAGTACCTTTACCTCGGAACTTATGGTAAGC CTTCATCCTCAATGCTTCTATTAGTCATTGCTGTCAGTGGTAGATACTCGTCTAAAAAAAATGCACAACACTTTTGGCTC TCTCTTCTTCCCCAAATGTTTAACAATATATAGTTGCACATAAAAATGTACCTAAGCCTTTTTTTTTTCTAAATGGTTGC AGCTACACAAGAAGAAGCTGCAACAGCATATGATATGGCAGCAATTGAATATCGTGGACTCAATGCTGTTACCAATTTTG ACCTAAGCCGTTACATTAAGTGGCTTAAGCCTAATCAAAGCAACACTGATAATAACACCAAAGTTACCACCTCTGATCAA GATCTTGTTGACTCTAACCCTATTAGCAACACCAATAATTTCATCCCAGATAACCCTCATGATAAAAAACAATCAGGACT TAATAACTTCTTCCAAAGTCAAGAGTCATTTAATAGCAGTAATGGAGAAGAAGAAACAATTACAATGGTCCAGCCTAGGC CAGCTGCTGCCACATCAGCCCTAGGGCTTTTGCTTCAATCATCTAAGTTTAAGGAGATGATGGAGATGACTTCTGCTGCT GATTTGTCAACGCCAGCTGAGTATGATATTCAGTTGGCGCCCTGTGCGTTCCCCGATGACATTCAAACATACTTTGAGTG TGAAGATTCTAGTAAATATGGAGAAGGGGATGATGATATGAATATGATCATGTTCAGTGACCTCAACTCTTTTGTTCCAC CTATTTTCCATTGTGATGACTTTGAAGGCTTGAAGGTTTAATTAGTGCATCAAATTAATGCACCTAGCTAGAAGCAAAAA GATTCAAGTTGATTTCTTGTTTGATTTATTTTTTTCACTGATAACATAGGTTTATTTAATTTCATGGTCTCTGTATATGA AGACTCTATTTGTTGACAGCAAGACATTGATTTGAAAAGGAAAGAAAGAAGGAGGAAGGAAGAAAGAAAACATTGTATGG TTTGGGAAACTGATCTTGGATTAGTGAGGATGATGAGAGAAAGGTGGGAAAGTGTTTATTTCATTTATTGTAGTTGTAAA GAAAATAAGCATGTCAAAAGGGCAAAACAAGAAGAAAAATAAGCATTATTATTTATTAGTTTATCATTATAAGCTTCCTT TCAAATAATGAGAACTCTTGTATCATCTCTTTGATTTATTGAATCAGACTTATCAGCTCCTTGGATCTCAGTCTAATCAT TTTCAGGTTTTTATTTATGTAATATTTATTATTAGGC
CDS sequence (LotjaGi6g1v0199500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTCAATCAAGGGAGGAGTATATTGGATCATTAAGGAGGAAAAGCAGCGGTTTTTCTCGTGGTGTCTCTAAATA CAGGGGCGTTGCAAGACACCATCATAATGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAGTACCTTTACC TCGGAACTTATGCTACACAAGAAGAAGCTGCAACAGCATATGATATGGCAGCAATTGAATATCGTGGACTCAATGCTGTT ACCAATTTTGACCTAAGCCGTTACATTAAGTGGCTTAAGCCTAATCAAAGCAACACTGATAATAACACCAAAGTTACCAC CTCTGATCAAGATCTTGTTGACTCTAACCCTATTAGCAACACCAATAATTTCATCCCAGATAACCCTCATGATAAAAAAC AATCAGGACTTAATAACTTCTTCCAAAGTCAAGAGTCATTTAATAGCAGTAATGGAGAAGAAGAAACAATTACAATGGTC CAGCCTAGGCCAGCTGCTGCCACATCAGCCCTAGGGCTTTTGCTTCAATCATCTAAGTTTAAGGAGATGATGGAGATGAC TTCTGCTGCTGATTTGTCAACGCCAGCTGAGTATGATATTCAGTTGGCGCCCTGTGCGTTCCCCGATGACATTCAAACAT ACTTTGAGTGTGAAGATTCTAGTAAATATGGAGAAGGGGATGATGATATGAATATGATCATGTTCAGTGACCTCAACTCT TTTGTTCCACCTATTTTCCATTGTGATGACTTTGAAGGCTTGAAGGTTTAA
Protein sequence (LotjaGi6g1v0199500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAV TNFDLSRYIKWLKPNQSNTDNNTKVTTSDQDLVDSNPISNTNNFIPDNPHDKKQSGLNNFFQSQESFNSSNGEEETITMV QPRPAAATSALGLLLQSSKFKEMMEMTSAADLSTPAEYDIQLAPCAFPDDIQTYFECEDSSKYGEGDDDMNMIMFSDLNS FVPPIFHCDDFEGLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 253 | 253 | 5.2E-103 | – | |
| PANTHER | 1 | 253 | 253 | 5.2E-103 | – | |
| CDD | 25 | 86 | 62 | 9.03103E-26 | ||
| Pfam | 25 | 76 | 52 | 7.2E-12 | ||
| SUPERFAMILY | 25 | 86 | 62 | 5.82E-18 | ||
| Gene3D | 25 | 86 | 62 | 1.7E-19 | ||
| SMART | 26 | 90 | 65 | 1.2E-24 | ||
| ProSiteProfiles | 26 | 84 | 59 | 18.334 | ||
| MobiDBLite | 96 | 116 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0199500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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