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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0199600 |
| Transcript ID | LotjaGi6g1v0199600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heptahelical transmembrane protein 2; TAIR: AT4G30850.1 heptahelical transmembrane protein2; Swiss-Prot: sp|Q84N34|HHP2_ARATH Heptahelical transmembrane protein 2; TrEMBL-Plants: tr|A0A1J7GDV8|A0A1J7GDV8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0199600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49626534..49631357) extracted from Lotus japonicus Gifu genome v1.2.
CACTCATCCCCTCAATATGAGTCACTAGATTTTCCTTTCAAGCTCCGACAAAACACATAACCAAAAATTTAACCCTTACT CTAACCTTACCTCTCATTTCTCACCTTCTACGTACCACCCAATCATTTCCATCCACGAAACCAATTTTATTACCACAACA ATTTATCCTTTTCCAATAAAATAAAAAAAGTAAAAATAAAAAATGAAAAATGTTCACATCACGTGACAACATCTTCGCTC TTTGGGTATAAATAGAGAAGTAGAGAACAGAGATCCGAGAGAAAGCGACGACGGCGACGACATAACTTCTCGCCGGAAAA TGAAACGCGATATTTTCCGGCGAGCACTTGCGGCGGCGAGGATGACCGGCCATCGCCGGAGATTCAACAGGAGCAAAAGC GAAGGGGAAGCAGCGACGAGGAAGGCGAAGGTGGAGGTGGAGGTGGAGGTGGAGAAGGAAGAACAGAGGTCGTCGTCGTC GATGAAACGGCGATTGGTGAAGTTCGAGGAGTTGCCGGAGTATCTGCAAGACAACGAGTTCATCTTGGACCATTACCGGT CAGAGTGGTCGGTGAAGGAGGCGTTGTGGAGCGTCTTCGCTTGGCACAACGAAACCCTAAATGTTTGGACGTGAGTGATT TCTGCTCCTCCGATCCTTCTTCTTAATCTTCCTTCACCGATTAATTTCGTTGTGGCTTTTCTTCAAACACTTGGCGTGCG TAAAATGAGTGTTGTGTGGTGTTCCGATGACTGATTTTTTTCTCCGGTGCAGGCATTTGGGAGGGTTTTTGATATTTGTG GCGATGACGGCGATGAGCTTCCCGGCGGCGACGACGGAGCTCGGTGGTTTTCTCTCCAATATCTACAGGTATTGAGAAGG ACATAGGGGTCATTTTAAGGTTTCTCTGTGGCACTTTTGTCCTCCAGAAAAATGTTCGAAAATTAAAATTATTTATAAAT TAATCTAAATATTATTTTGTCACTTTATATATAAATTGTATTTATTTGAGTGTGGGTTCCTGTGTGGGAGGGAGCAGAGG ACGAGCGATGGGGTTGATGGCCACCGCGAAGGAGATCAACGGTTCAGAGACTGACACCAAAGGATTTCAGGTTTCTTGTT ATTTATTTATCATTTTTGGTTGATAATAATCATAATATAATAATAATAATTATTATTATGGTTTTTGTTATATTATACTC CCTCCGTTCCTAATTATAAGACCTAATACAAAAAATTGCGCTTATTAAGAAAATATTAAATGCGTCTAATTAGTGTATTG ATTTTTTAAAAATGCATACATTCTTCCATATTTAGCCTTTGTCATTTTTTCTCACTAATTAATGGTAGGTGGTAATTAAA ACTTTGGAATTGAAAACACATAATTAATGTGAGGATATATATGGAATAGTAGATTACTTTTTGCTAGATTATTATTGTTA AAGGTCTTATATTTAGGAACATGAAAAATTTAAAACTAAGTCTTATAATTAGGAACGGAAGGAGTATAATTAATTTTGTC ATGAAAATAATTATTATGGAATTGAAAACTGGAAATGTTGGAAAAGGCGCGAAGCGTGGATTCGTCCTCCTCGGGGTAGT TGATAAGGTGGGGTAGCTTAGTCCCATCTTCATGTGCTTTCTGCTATGAGGATTCCCATTAGACTATTAGAGGCATTACT CACTCACTAGCTACCAATAAAATCACTATTGTTAATTTGGCATATTACCATGAAATTTTCAATTTTTTTTTAATTAAAAG AAGAGAAAATAGTTTTTTAAAACCAAGCTAGTAGATCAATTTGCGTGAGGTTGGTGTAGTTTAAGTAGAGTTTTTGAGTT TGAATCTACGGATACAATTTCGTTAAATACTTTGTAGTGGGAACTTTAACGTCTATGAAGATTCTGGCTAGTAGGCTCGA ACATAATTACCTTGGTGGAGAATACTTGTGATTTAAAAAAAGAAATTAAAAAAAGTTAAATTTCAAGAATTTAATAGTAC ACAAACATCCAATAATGATGATTGTCAAATCAGAAAATAATCTTTTAATTAAAATAAAAAGAACATAAATACTTTTTAAT ATGTGACACTCAATTATTGAATGTTTTTGTAAAACATTTTCACATTGATATGCACAACCATTAAACTCAATTTTCAATCA ATTTTATTCTCCATTTTTAGTCATTATTCTCTAAATGTTTTTTACTTGTTTGGATATTTGATTTGGTCTTTCTATAATCA AATTCTTAATAAAAAATCCATAGTGTTTGATTTGGAATGGAAATCGGATATTTGAATTTCTTCTCAGCAAATTACTTGAC CTATACGAAAATAAATACTAATTTGACAACTGTGCTTCAAATTCAATTGTCTGGTGCCAGTAGAATTCTATTTTTGTGGC GTGTTCGCCACTTCTGTTGCGTATATGATAAGCATGTAATGAAAGTCTCCTCCAATTTTTAATAGGTTTATCCAAATCAC TCTTGTAAATAACTTTATTCAAGTTTAATACATTAATATGTGAGTTTAGAATTTCATAAAAATTATTTCTTATTTATAAA TAATTTTATTAATTTGATTGGCCTGCTGCATGGCTAACTTAGACACCTCATTTTTAATAGCTACATGTAATAAACTATCA TTTTCTCCCTTTCAAAAAAAATTATCCTTTTATCTTTCTGCTAATCCAATTCTAGTGACTTAATTAAATTAATTTATAAT AATACTTCATCAAATAATGTAACACATGACAATACATCAATAGATGATACAAACAGTACATTTAAAACATATTCTTAGAT TGTTTATTTAATTTTTCACTTTTATATGTAATTACTTGTTTTATTAAAAAAATTAATTTTTATTCCTTAGTTTTAAGAAT CTGTAAAGAAAATAGTAAAAATAATAAAATCTTATTTTCACAATTTTCTTCTTATTATAATGTAAACAAATTATTATTTT TATAATTAAATATTAAAATACATCAATTGTTAACAAAAAGAAAAACCAAATACCCCTTAAGAATTCAAAAGGACAGTAGT TTAGTTTTTATATTTGTTGTATCTAAAACATATTTTATATCAAGCCGTGAGTTATCAGCTATAGCCTATAGCTCTTTACT TAGGTAAAATTGTTATTGTTATATTGGTCTTAAGAGTTTTACTTAAACAAATACACATGTACTAAAATATTATTTTCTTT TTAAATGAGTTCATTCAATTCTATTTGGATTAATTAGGAGTTAATATTCTGTCAAAATTGATGAGTTAATATATATTTTT TAATATAGTTAAAATAACTTGTTTATTTTGTCATTCATAAATAACCTATGATTTTAATTCATGAAGAGTTGGTTGCGGTA AATTTGAATTACAATTTCAGACCTAATTTATCTCAAATTGGGATTGGTGTGAACTACAAAAAATAACAGAACAGTGCTTT TAGTTCAAGTTATCATGTTACTTACATTTGCAAGCTACATATCCTTTTCGATGGGAGGAATCGATGAGAATTTATTGATC AATATTCATTGAAACTTGTAGTAACACTTGACCGGATGGATCTTGGACCAAAAACATGCACTGCTGATGTTAAATGCATT GCTCCTCATAATATATCATACAAGATTTTGCACCAAATACATTGCTTTATTTTGAATTCATAACCTAGTGAAATTATGTT TTCATAACTTCATCATTGACACATGTACGTTTTTTCCCCATCAGGATTCGCATTTGAGACGCGTTCTTGAACCATCCATC TTTCATGGGCTGAGAGAATACGATGCAGAAAGTATCCCCAGATGGCCATGGTTTGTTTTCTTAGCTGGAGGAATGTGCTG CTTGGCTTGCAGTTCTCTTTCCCACCTTCTAGCCTGCCACTCCAAACGCTTTAACCTGTTTTTCTGGCGTCTAGACTACG CTGGAATATCCATCATGATAGTCTCCTCCTTCTTTGCTCCAATTTACTATGTCTTTTACTGCAACCCTTTCATAAGGTTT TTGTACTTGACATCAATATCAGTGCTTGGTGTTCTTGCCATAATCACCCTTCTAACCCCCGCACTTTCCACACCGCGCTT TCGATCCTTTCGAGCTTCTTTATTCCTCTCCATGGGCTTTTCTGGTGTCATTCCTGCAGCTCATTCTCTTGTGAGCAACT GGGGCCACCATCATATTCTTGTTGCTCTTGGATATGAGCTCCTAATGGCCGTTCTTTATGCCACAGGAGCTGTGTTTTAT GTTACTAGAATACCAGAGCGATGGAAGCCTGGAGCATTTGATATTGCAGGACACAGCCATCAGATTTTTCATGTTTTTGT TGTTCTTGGGGCACTTGCACATAGTGTTGCCACGCTGGAGATAATGAATTTTCGACAGGGATCTCCGACCTGTGCATTTT AGTCAATTTCGTGTATTGAGAGTTGTTCCTGTTGTATGAATTGCATTATCATTCTTTGAATGAAATAGCTTGCTGATTTA TGTGCAGCCACCAATTCATGTTTATTTTGACTATTCTGTTATATTAGAGGCAGGCTGGCATAATATGTAGTAATATTATG TATGACATGAATTCTAATGGACTCTTAGGTTAACAGAACAATTCCTCATTCTACTTTTTCTGCATTAGAACTCATGAAAT GGATTCTAACTAACTTGCAACATTTATCCAGAGACACTACAAGGTGCTTCCTAAAAATGCTAAAGAGAAAGAAAAAAAAA CTTTTAACTAATTTTCCATTGAACTAGCTGTAGTAAGTGTTGGAGAAAATAGAGAGATAACGTGAAAGAGTAGAGAGAGA GATTGAGGGAAAATATATTATTGA
CDS sequence (LotjaGi6g1v0199600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACGCGATATTTTCCGGCGAGCACTTGCGGCGGCGAGGATGACCGGCCATCGCCGGAGATTCAACAGGAGCAAAAG CGAAGGGGAAGCAGCGACGAGGAAGGCGAAGGTGGAGGTGGAGGTGGAGGTGGAGAAGGAAGAACAGAGGTCGTCGTCGT CGATGAAACGGCGATTGGTGAAGTTCGAGGAGTTGCCGGAGTATCTGCAAGACAACGAGTTCATCTTGGACCATTACCGG TCAGAGTGGTCGGTGAAGGAGGCGTTGTGGAGCGTCTTCGCTTGGCACAACGAAACCCTAAATGTTTGGACGCATTTGGG AGGGTTTTTGATATTTGTGGCGATGACGGCGATGAGCTTCCCGGCGGCGACGACGGAGCTCGGTGGTTTTCTCTCCAATA TCTACAGAGGACGAGCGATGGGGTTGATGGCCACCGCGAAGGAGATCAACGGTTCAGAGACTGACACCAAAGGATTTCAG GATTCGCATTTGAGACGCGTTCTTGAACCATCCATCTTTCATGGGCTGAGAGAATACGATGCAGAAAGTATCCCCAGATG GCCATGGTTTGTTTTCTTAGCTGGAGGAATGTGCTGCTTGGCTTGCAGTTCTCTTTCCCACCTTCTAGCCTGCCACTCCA AACGCTTTAACCTGTTTTTCTGGCGTCTAGACTACGCTGGAATATCCATCATGATAGTCTCCTCCTTCTTTGCTCCAATT TACTATGTCTTTTACTGCAACCCTTTCATAAGGTTTTTGTACTTGACATCAATATCAGTGCTTGGTGTTCTTGCCATAAT CACCCTTCTAACCCCCGCACTTTCCACACCGCGCTTTCGATCCTTTCGAGCTTCTTTATTCCTCTCCATGGGCTTTTCTG GTGTCATTCCTGCAGCTCATTCTCTTGTGAGCAACTGGGGCCACCATCATATTCTTGTTGCTCTTGGATATGAGCTCCTA ATGGCCGTTCTTTATGCCACAGGAGCTGTGTTTTATGTTACTAGAATACCAGAGCGATGGAAGCCTGGAGCATTTGATAT TGCAGGACACAGCCATCAGATTTTTCATGTTTTTGTTGTTCTTGGGGCACTTGCACATAGTGTTGCCACGCTGGAGATAA TGAATTTTCGACAGGGATCTCCGACCTGTGCATTTTAG
Protein sequence (LotjaGi6g1v0199600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRDIFRRALAAARMTGHRRRFNRSKSEGEAATRKAKVEVEVEVEKEEQRSSSSMKRRLVKFEELPEYLQDNEFILDHYR SEWSVKEALWSVFAWHNETLNVWTHLGGFLIFVAMTAMSFPAATTELGGFLSNIYRGRAMGLMATAKEINGSETDTKGFQ DSHLRRVLEPSIFHGLREYDAESIPRWPWFVFLAGGMCCLACSSLSHLLACHSKRFNLFFWRLDYAGISIMIVSSFFAPI YYVFYCNPFIRFLYLTSISVLGVLAIITLLTPALSTPRFRSFRASLFLSMGFSGVIPAAHSLVSNWGHHHILVALGYELL MAVLYATGAVFYVTRIPERWKPGAFDIAGHSHQIFHVFVVLGALAHSVATLEIMNFRQGSPTCAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 101 | 101 | - | – | |
| PANTHER | 27 | 383 | 357 | 1.5E-165 | – | |
| PANTHER | 27 | 383 | 357 | 1.5E-165 | ||
| Pfam | 93 | 366 | 274 | 1.1E-74 | ||
| TMHMM | 102 | 124 | 23 | - | – | |
| Phobius | 102 | 123 | 22 | - | – | |
| Phobius | 124 | 186 | 63 | - | – | |
| Phobius | 187 | 211 | 25 | - | – | |
| TMHMM | 189 | 211 | 23 | - | – | |
| Phobius | 212 | 222 | 11 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 223 | 244 | 22 | - | – | |
| Phobius | 245 | 249 | 5 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 250 | 270 | 21 | - | – | |
| Phobius | 271 | 281 | 11 | - | – | |
| TMHMM | 279 | 301 | 23 | - | – | |
| Phobius | 282 | 299 | 18 | - | – | |
| Phobius | 300 | 310 | 11 | - | – | |
| Phobius | 311 | 333 | 23 | - | – | |
| TMHMM | 311 | 333 | 23 | - | – | |
| Phobius | 334 | 353 | 20 | - | – | |
| TMHMM | 354 | 376 | 23 | - | – | |
| Phobius | 354 | 374 | 21 | - | – | |
| Phobius | 375 | 385 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0199600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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