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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0201000 |
| Transcript ID | LotjaGi6g1v0201000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G16890.3 TIR-NBS-LRR class disease resistance protein; Swiss-Prot: sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1; TrEMBL-Plants: tr|A0A151TGL3|A0A151TGL3_CAJCA TMV resistance protein N; Found in the gene: LotjaGi6g1v0201000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49803510..49805566) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGATTTCCATATATGTGCTTAGATTTCTTCTTTTTGTTCGAAGCTTAGGAAGTGACATGTCTACCTTGTTACTGCAG AATGTTGTGAATTTAAAGACAATTGATCTTCAATGCTCTAGACACCTGGTTGAGCTCCCAGACTTATCTATGGCCACAAA TCTTGAAGTATTATCTCTTGATCAGTGTATAAGTTTGCGTGATGTTCATCCATCCATTTTTTCACTCCACAAGCTTTGGC ATCTGGGTTTACAATACTGCACAGAGATTGAAAGCCTTGAAAGTAATGTCCATTTAAAATCTATCCGCAGTTTCAATCTC ACGAACTGCTCATCCCTGAAGAAATTCTCAATCTTCTCAGAGAAATTGGAGACAGTGTGGTTAGAACGCACAAGTATCCA GAAATTACCCTCATCAATTTGGCATTGTAAGGAACTTCATCATATGACTCTAAGGGACTGCTACAATCTTGAGAGTTTTG GGATTGGGAACAAGTCATCTCATGATCCGGTAAACGCATCTCTTCGCCATCTAGACCTTTCTGGATGCAAATTACTAAAT GAATTCCATTTATGTTTAATCCTTGATGGTATGCAGTCTTTAAATGAGTTGAATTTGGGAAATTGTTGCAACTTACGAGC ACTCCCTGACACCATTGGCTCGTCAACAAGATTAGAGCGCTTGTACCTAAGTGGAAGCAATGTTGAGATGTTGTCTCCAA ATATCAAGATCCTTTTGAATCTACGAGAGCTTCGGTTAGACGATTGTAGGAAACTTGTGTCTCTTCCAGAGCTTCCACCT TCCCTACACATGTTAAGTGCTATTAACTGCACATCTTTGCACACAGACATCACTCATTTGGTAACAGTGGTACAACACAA CATACCTGTCAGATTTTATGAAGGACCTTCAGGACGTCCTCAATATGTTGTAATCCCTGGAGACCAAGTTCCGGACATGT TTATCTTTTGTGCTGAAGGGGATTCAATAACGTTTCCGCAACTTCCACAATCTGGCCTGTGCGGCTTTATTTGTTGCCTC GTTCTTTCTCATCTACCTTCAGGGAGCTACCATGGAGATGTCAAGTGTTGTATCAACAAACGTTCCACCTTTGATATAGC TAGAATGTTGTTGTGGGGTACTAATTCCAATTCAGATCATGTGCTTCTTTGCTTTTTGGGAATCAATGGTGAAGATGATT GTTTTGAAAGTGGAACGTGTGATCTTAACAGCATATCATTTGAATTCCAGCTTCTAGATAAGAGTGATGGATTACTCTCC GTGAAAGACATAATAAAGAGGTGCGCGGTCTTAACAGCATGTCATTATGCCTCTCGAGAAAAGACTATTGAGTTTCAACC CAAATCGTTTACATTTGCAGATTTGGCATCACTTTAGAAGGTAAAGTGCTTTATCAAACAACCATTAATGGAAAAGTTTG AATTAAACTTGTATCCATGATTTCACGAATTTTGCTGTTGTGCAAGAGCTGACTGCGATGACTCAATTGCAGGATCGGTG GACTCCTCCTTCAGTGGGGTGGGTGAAGCTGAACACCGACGGAAGCTTCACTAGGGGTTCGTCCCTCATGGGCTGTGGAG GTCTTTGTTAGAAATAATGATATGAACTATTCATGTAGCCCTGACATAACAGCTTTAGCTTTTGAGATAATTGGTTGTTT GACAGTCTTCTCCAGGATCGTCATGGGAATTGGCGGGCTGGTTTCTCAAGTTTTGAAGGAGTGGGAGAAGTGTTTTTGGT TGAGTTGCTTGGAGTTGTTTGAGGCTTATCCTTGTCTCGGAGGACTGGTGGGCGTAAGCTTGTTTGTGTGAGATAGATAG CCTTGATGTAGTTAACTGCCTGAATGGTTGAGGTCCGGTTAACCTTCATTCATGTGCTGCGTTTATAGCAGAAGTTTGTT ATTTGGTTCACCCTAAACTTTGTATATTTTGTAAATAGACACGTTGAATTTTCATTTTATCTCAATAAATACTTAAACTT CTACTAGTAAATGATGCAGATAAGCTATAATGAGAAATTGCATATGCATTTCTCTTC
CDS sequence (LotjaGi6g1v0201000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTACCTTGTTACTGCAGAATGTTGTGAATTTAAAGACAATTGATCTTCAATGCTCTAGACACCTGGTTGAGCTCCC AGACTTATCTATGGCCACAAATCTTGAAGTATTATCTCTTGATCAGTGTATAAGTTTGCGTGATGTTCATCCATCCATTT TTTCACTCCACAAGCTTTGGCATCTGGGTTTACAATACTGCACAGAGATTGAAAGCCTTGAAAGTAATGTCCATTTAAAA TCTATCCGCAGTTTCAATCTCACGAACTGCTCATCCCTGAAGAAATTCTCAATCTTCTCAGAGAAATTGGAGACAGTGTG GTTAGAACGCACAAGTATCCAGAAATTACCCTCATCAATTTGGCATTGTAAGGAACTTCATCATATGACTCTAAGGGACT GCTACAATCTTGAGAGTTTTGGGATTGGGAACAAGTCATCTCATGATCCGGTAAACGCATCTCTTCGCCATCTAGACCTT TCTGGATGCAAATTACTAAATGAATTCCATTTATGTTTAATCCTTGATGGTATGCAGTCTTTAAATGAGTTGAATTTGGG AAATTGTTGCAACTTACGAGCACTCCCTGACACCATTGGCTCGTCAACAAGATTAGAGCGCTTGTACCTAAGTGGAAGCA ATGTTGAGATGTTGTCTCCAAATATCAAGATCCTTTTGAATCTACGAGAGCTTCGGTTAGACGATTGTAGGAAACTTGTG TCTCTTCCAGAGCTTCCACCTTCCCTACACATGTTAAGTGCTATTAACTGCACATCTTTGCACACAGACATCACTCATTT GGTAACAGTGGTACAACACAACATACCTGTCAGATTTTATGAAGGACCTTCAGGACGTCCTCAATATGTTGTAATCCCTG GAGACCAAGTTCCGGACATGTTTATCTTTTGTGCTGAAGGGGATTCAATAACGTTTCCGCAACTTCCACAATCTGGCCTG TGCGGCTTTATTTGTTGCCTCGTTCTTTCTCATCTACCTTCAGGGAGCTACCATGGAGATGTCAAGTGTTGTATCAACAA ACGTTCCACCTTTGATATAGCTAGAATGTTGTTGTGGGGTACTAATTCCAATTCAGATCATGTGCTTCTTTGCTTTTTGG GAATCAATGGTGAAGATGATTGTTTTGAAAGTGGAACGTGTGATCTTAACAGCATATCATTTGAATTCCAGCTTCTAGAT AAGAGTGATGGATTACTCTCCGTGAAAGACATAATAAAGAGGTGCGCGGTCTTAACAGCATGTCATTATGCCTCTCGAGA AAAGACTATTGAGTTTCAACCCAAATCGTTTACATTTGCAGATTTGGCATCACTTTAG
Protein sequence (LotjaGi6g1v0201000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTLLLQNVVNLKTIDLQCSRHLVELPDLSMATNLEVLSLDQCISLRDVHPSIFSLHKLWHLGLQYCTEIESLESNVHLK SIRSFNLTNCSSLKKFSIFSEKLETVWLERTSIQKLPSSIWHCKELHHMTLRDCYNLESFGIGNKSSHDPVNASLRHLDL SGCKLLNEFHLCLILDGMQSLNELNLGNCCNLRALPDTIGSSTRLERLYLSGSNVEMLSPNIKILLNLRELRLDDCRKLV SLPELPPSLHMLSAINCTSLHTDITHLVTVVQHNIPVRFYEGPSGRPQYVVIPGDQVPDMFIFCAEGDSITFPQLPQSGL CGFICCLVLSHLPSGSYHGDVKCCINKRSTFDIARMLLWGTNSNSDHVLLCFLGINGEDDCFESGTCDLNSISFEFQLLD KSDGLLSVKDIIKRCAVLTACHYASREKTIEFQPKSFTFADLASL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 100 | 99 | 5.0E-12 | ||
| PANTHER | 6 | 420 | 415 | 3.8E-35 | – | |
| PANTHER | 6 | 420 | 415 | 3.8E-35 | – | |
| SUPERFAMILY | 6 | 257 | 252 | 2.72E-31 | – | |
| Gene3D | 101 | 275 | 175 | 2.0E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0201000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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