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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0205700 |
| Transcript ID | LotjaGi6g1v0205700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ubiquitin-associated protein (DUF1068); TAIR: AT2G24290.1 ubiquitin-associated protein (DUF1068); Swiss-Prot: sp|P08964|MYO1_YEAST Myosin-1; TrEMBL-Plants: tr|I3SF95|I3SF95_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0205700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50291812..50295199) extracted from Lotus japonicus Gifu genome v1.2.
GGAGATAAATTCAGTGGTATTGCACTTAATTTTTGCAAGTTTTGAATCCCAAAAAATATAAAAGAAAATGTAAAAAGAAA AAAGTTGGCAGGATGGCACCACAGAACAGAGTATGGGAACACAGTGTTCCTCTCTGACTTGTTCAAATCAGCAAATCGAC ATCACTAACCACCACACCACCTAGTAAAAATAAAAAACAACCGACAAACAAAGCTCCTTTCAGATTCAGTACTACACAGC ACAGCACAAAATAGAATCTATCTTGATCATCATCAATTCATCATCATCATCATCATCATCATTATCATCAGTGTACTACT AGATTAGATCTCAGAGATGTCACGGGGTGGTCGATCTGATTCAGGAATCTGGTTACGCTGGTGTCTGGTTCTGTTCGCGG TCGTGTCGGCGTTGGGTGTTTGTGGACCTGCTCTCTACTGGAGATTCAAGAAGGGAATCGCCATTCGCGCTTCCAATTCT TGCCCTCCATGCCTCTGTGACTGTCCTCCTCCACTTTCTCTCTTCCAAGTCGCTCCTGGTACCAATTCTTCACTTCTTTG CTTTTTTAACCTTCACAAACCCAATCACTAGTTGCATTGCAATTTGTATGTATGTCTTAGATCTAGCAATTTTATGTACA GAGTGATTGATTAAACTTTTTGATCATGTGTGTTTGGAATTTTTTTTTTACCTGAGATGAGATGTTAACTTAACTACTTT TTTACTGATTCATTTCTTTCATTTATGTCTTTGATAAACAGGGCTGGTCAATCTCTCTGTCTCAGGTTAGAGTTTCCTCT CATGGCTTTTCTCAAATGTATATTTTGTTGTAATCTTCTTACTAGCTGAGCACTAACAACAAGCTAACTACTAATGAGTA AGAACATGGATAACTTAGACTTGGACTTTGAGCATGACTGTTTATGTTATTATGCCTTGCTAATTAGTTCTTTAGATGAT TGGAGATTAATAGGTTAATTTATAATTTGAGTACCTATAATTTTTCCCCTGGTTAGCTGGGGATTAAGCTATAAGTCACA CTATTAAGTAAGAAATTAGGTGAGAGGGTGATTTAGGGGAGACAGACAAGATGCCTTATGAAAAAACCAATTTGGTTTTA TGTTGAGGAGATCATTTGTGAAAGAAATATACTAGATATGAAGATTGATGGTAATGGTCTTTATTGATTTGGAAAAAGGC ATGCGATAAATAACCTAAATAGGTATTGCGTTGTGGGTTTTGGATGTGATTACTAAACATATCCAAGATCCAATGCCATG ATGCATGCTTCATGTTATATAGACATGTAGTCTTTGAAATAGAGTCGAGAGAAGAAATAAATGAGAAGCTAAAGATATAG TGATAAGCTTTGAGAGCAAAGTTTTGGTTTAAGTAGAAGTAAAACAAGATACAAGGAATTAAGTTTATCAAGGGGTACTC TAGTTCTAGCTTATAGGAGAAAACTAGAGACCATATTATACCTCAAGGCACATGGTTTAAGCATCTTGGGTTCATTCAAA TGACGGGGAAATTGAGGGAAATGTAAACTATGGGGATTCAAGTGGGTAGATGAAATGGAGGATTGTTCGGGATTTATTGT TTCTGATAAAAAACTATCGCTCAAGTTTAAGGGAAATTTTACCGCGTAGTTATGAGACTTACAATGTTACATGAGAAAGA GACTGTTGTTGAGTAGTAAAGAGCCAAGGAGAAAGTAAGCTCAATGTTGCAAAATTTAGAATGTTAGATGCATGGGAGGA GACACGAGATAAGGCAGGCTTACAAATAAATTTAGAAAAGAAGTTGGGTATAACAACTATTGTGGGAAAAGATGGTAGAA TATATCGTCTTAGGTAGTTTGGTATGAGGAAAGAAGACCTGGTAAGGAGAGTAGATCAAATTGAAAGTTGTCTAATAGGT AGTGAACTAGAGGTAGAGGGAGACATAGAAAAGCTATAGGCCAAACTATTAAGAAGAGTTTAGGTATGTTTTTCCTCATA CATTATTTTCGATAGAACATTATGGATAATATGATTCAAGTAGCTAACTTCACCTAGTGTAAAAAGGTTTTAGTTGATGT GTAAGTTTATCTTATTTCAGTCCTCATACAAATGTGCTCATCATAGTCCCATTCAACATTGAATATTCTTTTCATTGCAA AACAACTGGTAGGTGCTCTTTCGTTCCCGTAGGTGCTCCATTCTTCTAAGCCTGTGCTCTTCTGTTCACTAAGTATACCT TTAGATGCTTTCTCTTTCTGGTAAAATGTCCAGTGTGGACTAAAGTGACTGTATGGGCTATTTCAAAACGTTTGTAAAAA ATATTTATAGGGACTAATTTAACCAATATATGTGTACCATAGCAATGTGTACTGTTCAAGTAAGATGAAAGAGGTAGGAA AGGTGGTATTGCTTTGTCCATGAGGAAACTAACTCCACATACATCATCTTAGATTTCTTATTTTGTAATCAGTGTCATTA TGAATGTCAGATTATGCTAGCCATTAATCAAGTTTTTGAAATTGTCACGCACAAACTTTTAGCTAATTTTGCTACTGATC TGCACATGTATGACATCAGTTGTGCTGATCAACAGATTGTGGGGGCAATGATCCGGATCTAAAGGAGGAGATGGAGAAGC AGTTCGTGGACCTCCTCACAGAGGAGCTCAAGTTGCAAGAGTCTGTTGCCGAAGCTCACAGTCGGCACATGAACATAACT TTCGCCGAAGCAAAAAGAGTAGGAGCTCAGTACCAGAGAGAAGCAGACAAATGCATTGCTGCAACTGAAACATGTGAGCA GGCGAGAGAACAAGCTCAGGCCAAGTTCATCAAGGAGAAAAAAATGACTTTGGTGTGGGAGCGACGAGCACGTCAAATGG GCTGGGAAGGAGAATAACTGCATCAAGTTTTTTTTTTTTTAATATTTATATTCTTTATGGTCATAATCATGATTTTGTAA AAGCATGCAAGCAAAATGCTCTAGTTGTCAACAAGTGTAGGCTAATATTCTCCTCCTACCATGTTTGTAACTGTATCGCC TATGTGCTAGTATCAAACAATTTTCACTTCACATATGATACCAATGCTTTATACGTGCACTATTACCACGATACAGATAC TGCCCCTTGGGCTGCTTCAAACTCATCAAATATGTTACTGGTCTGAATTATATTATATACACTATTTTCTGTTTCCAAGT GCTCTCTCACTCACTCTGTTTTATAAACTATTGCTTACAATTGTACTAATTGACTTCCCTTTTACTTTGAGTCTCGGAAA TTGGTGATACATAAGTTATATTGATTTAATTTCTTTTTCTCCATTCAACAAAACCCAGTAGTTGATAGTATAATAGAAGG TCTACTTTTTGTCCACCTTATAATATGG
CDS sequence (LotjaGi6g1v0205700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACGGGGTGGTCGATCTGATTCAGGAATCTGGTTACGCTGGTGTCTGGTTCTGTTCGCGGTCGTGTCGGCGTTGGG TGTTTGTGGACCTGCTCTCTACTGGAGATTCAAGAAGGGAATCGCCATTCGCGCTTCCAATTCTTGCCCTCCATGCCTCT GTGACTGTCCTCCTCCACTTTCTCTCTTCCAAGTCGCTCCTGGGCTGGTCAATCTCTCTGTCTCAGATTGTGGGGGCAAT GATCCGGATCTAAAGGAGGAGATGGAGAAGCAGTTCGTGGACCTCCTCACAGAGGAGCTCAAGTTGCAAGAGTCTGTTGC CGAAGCTCACAGTCGGCACATGAACATAACTTTCGCCGAAGCAAAAAGAGTAGGAGCTCAGTACCAGAGAGAAGCAGACA AATGCATTGCTGCAACTGAAACATGTGAGCAGGCGAGAGAACAAGCTCAGGCCAAGTTCATCAAGGAGAAAAAAATGACT TTGGTGTGGGAGCGACGAGCACGTCAAATGGGCTGGGAAGGAGAATAA
Protein sequence (LotjaGi6g1v0205700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRGGRSDSGIWLRWCLVLFAVVSALGVCGPALYWRFKKGIAIRASNSCPPCLCDCPPPLSLFQVAPGLVNLSVSDCGGN DPDLKEEMEKQFVDLLTEELKLQESVAEAHSRHMNITFAEAKRVGAQYQREADKCIAATETCEQAREQAQAKFIKEKKMT LVWERRARQMGWEGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 7 | 172 | 166 | 1.8E-70 | – | |
| PANTHER | 7 | 172 | 166 | 1.8E-70 | – | |
| Phobius | 12 | 35 | 24 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Pfam | 13 | 173 | 161 | 6.1E-70 | ||
| Phobius | 36 | 175 | 140 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0205700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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