Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi6g1v0205800 |
Transcript ID | LotjaGi6g1v0205800.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Calmodulin-binding protein; TAIR: AT2G24300.3 Calmodulin-binding protein; Swiss-Prot: sp|F4IPM3|CB60E_ARATH Calmodulin-binding protein 60 E; TrEMBL-Plants: tr|K7MCM7|K7MCM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0205800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50297481..50300518) extracted from Lotus japonicus Gifu genome v1.2.
TTGGATTTTACAACTAATCTCATTAATGAAATTTTGTACAAAGTGAAGGTGGCATTGCATACATGGATTTTATATGTTCT CAGCTTTTGAGCTTCCGAAACTTATTTCTTGGTGTCCTTATCATAAGTAGTTTTAGTTTTTATGTGCATTTTCATACAAA CTTTGTGACACTTCACACTGATTTACTCGAAACAGTGTAATCGTGGAAGCTTTAAAGGTGGACAGTATGCAGAGACTATG CTCATCTTTGGAACCTCTTCTCAGAAAAATTGTGAGTTATAGATTCTTTGTTTCTTATTAAATTGTGTATATTTTTAGCA GGTTGTTTTACCTGCAATGATTAATCACTTTCCTGTGCAAATAGTATACCCTCTGCTTGAACAGTTCACAAAAGAAGTGA GATCATAAAAGTAGTACCTTATTAATGTTTCTGTAAAGAGTATGATTGTGCAATATTATGTTTTCATATAGAAAGAATTA ACTAGCTGAATCAATAAAACAACCTATCAGTTATTTCTGTTAATCTATCTTATTCTATAACATACAGGTCAGTGAAGAAG TGGAGCGTGCTTTGACGAAATTGGGGCATGCTAAATTGACTGAAAGGTGTGTTTCCCCTTTCAAATTAGAATTCTGAAAG AAATCAGGAAGATATTGCTAAAGATGATCTCGTTATCAATAATATCGCTCACAATTTGGTTTTTGAACTTATCACAATGG CATAGTGCGATCCGTATAGCCGAGCTCACTTAGTAGGATAGGGCATTTGTTGTTGTTGAGTCATAAATAATTGTTTAGTA CAATACTGATACCTAATAACTAATAAGCTACTTATTGGATGTTATAGTACTTAAGCATATGCAATCCTTATCAATATGAT ATAAATTAGATGCTGCAAAGCTGTTTACAAATACAAAAAGCCTAGGAAAATAATTGAATACTAATTTTTGTTTAGCCATG ATGTTATCACTTACATTTTACCTGTGTTAGATCTCCACCACCAAGAATAGAAGGACCAGGGACAAAGAGCCTGCAGCTTC ATTTCAGGACAAGAATGCCACCTCACTTGTTCACCGGGGGAAAGGTCGAAGGAGAGCAAGGAGCATCTATCCATGTTGTC TTGCTTGACCCGAACACAGGTAATGTTGTTGAAGTTGGACCAGAGTCAGTTGCTAAATTGAACGTCGTGGTACTTGAAGG TGACTTCAATGAGGAAGCAGATGAAGATTGGACAAAAGAGCACTTTGAGAACCATGAAGTAAAGGAGCGTGAGGGGAAAA GGCCACTTCTAACTGGAGAGTTGCAAGTTAGCCTAAAGGAAGGGGTAGGAACCTTAAGTGATCTTACTTTCACTGACAAT TCTAGCTGGATAAGAAGCAGGAAATTCAGGCTTGGTGTTAAGGTGGCTCCTGGGTATTGTGAGGGGATTCGTGTGCGCGA GGGAAAGACTGAAGCCTTTGCTGTTAAAGATCATAGAGGAGAATGTGAGTTTTCTTTTAGTTAACACTTCATGGTTTTTT CTAATGATTAAATAATAGTTTGTGATTGATTAACACTTCATGATTGATAATATTTATTTTCTGTAACTTGCAGTGTACAA GAAACACTATCCACCTGCTTTGCATGATGAGGTTTGGAGATTGGACCGGATAGCGAAGGATGGAGCACTACACAAAAAAT TGATTCAAGCAAAAATAGTATCTGTAGAAGATTTCCTACGTCTTCTTGTCCGTGAGCCACAGAAGTTAAGAAGTGTAAGA ATTCACTGCAATTTGGTTATCAAGCTTCAATATCATTCTTCTCTAATCATAGTTTTCTGAATACTCCAATATAAAAACTC ATTTTCCACTTTTCCTGCAGATACTTGGTAGTGGAATGTCCAACAGGATGTGGGAGAATACCGTGGAGCATGCCAAGACA TGTGTCTTGGGTGGTAAGCTCTTTGTTTACTACACTGGAGAAACCAATAGCAGTGGCATTGTGTTCAACAATATATATGA GCTAAGAGGCCTCATTTCTGAGGGGCAATTCTTCTCTCTGGAATCACTTACTCCAAATCAGAAGGTCAATTTCCTGCATA AATTAAAAGCACATAATTCCTAGACCAAATTGATATCATGCTTAGGTTTGATATGTGATCATTGATTAACATGCAATTTT AAACCACTCTTTCTCCCATTAGCGTGTGCGTTTGAGCCCGTTTGGATGCGGACCAAAGAGAACTTATTGGAGCATATCTG GTGTTTTTTTTAGTTGATAAGCTCCAATACATGCTCTCTATCTGATTAGTAGTTACATTAACTTATTGAGAATTTTAATT ACAGATGTCAGTGGATTCCTTGGTGAAGAAAGCATATGATAATTGGGACCAAGTTATAGAATATGATGGAAAAGTTTTAA ACTCTCTCACCAACTCCAAAAAGGGATCAAGATCTGTAGCAGCTCATATAATGCCTCCCAGCAATTTCCTAGAGCAGCAA TATACTTCTACAAAGAACAAAGTTTCATCTGTCTCCTCTGAACCAAATCAACATTTGCAAATAGCAAATAACTATTCACC TGATTTGAGTGATTATTCATTTGGGAGATCTGATAATCAGATGGTAGCAGCAACATCATTCAACTCTCAAATAACAAATA ACTACATGTCCGGTGAAAATCCTGAAAATGAAGGTGGTGCTTATTATTCTGGAGATTGGTCTAGGCAGAGAAATGGACAA GGGTTGGAAGACATTGTAGCGGAAGAACTCCGGCTTCGGAGTTCCCAGATGTTGGAGAGTGATGATATGCAGAGACTTCT TCACACAATTAACACAGGAGTCAGCATGTCAAGTAATTTTGGTAATTCTAATGAGGGTTGTTACACCTACAGCCTTCAGT ATCAGCCCCAGATGTATGATTCATTCAGTGAGGATCATGGGAAGCCTTCAGGGAAAGCTGTTGTTGGGTGGTTGAAGCTC AAAGCTGCTTTAAGGTGGGGCATATTCATCAGAAAAAGAGCGGCAGAAAGGAGAGCTCAACTTACCGAGTTGAATTGA
CDS sequence (LotjaGi6g1v0205800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCAGCTTTTGAGCTTCCGAAACTTATTTCTTGTGTAATCGTGGAAGCTTTAAAGGTGGACAGTATGCAGAGACT ATGCTCATCTTTGGAACCTCTTCTCAGAAAAATTGTCAGTGAAGAAGTGGAGCGTGCTTTGACGAAATTGGGGCATGCTA AATTGACTGAAAGATCTCCACCACCAAGAATAGAAGGACCAGGGACAAAGAGCCTGCAGCTTCATTTCAGGACAAGAATG CCACCTCACTTGTTCACCGGGGGAAAGGTCGAAGGAGAGCAAGGAGCATCTATCCATGTTGTCTTGCTTGACCCGAACAC AGGTAATGTTGTTGAAGTTGGACCAGAGTCAGTTGCTAAATTGAACGTCGTGGTACTTGAAGGTGACTTCAATGAGGAAG CAGATGAAGATTGGACAAAAGAGCACTTTGAGAACCATGAAGTAAAGGAGCGTGAGGGGAAAAGGCCACTTCTAACTGGA GAGTTGCAAGTTAGCCTAAAGGAAGGGGTAGGAACCTTAAGTGATCTTACTTTCACTGACAATTCTAGCTGGATAAGAAG CAGGAAATTCAGGCTTGGTGTTAAGGTGGCTCCTGGGTATTGTGAGGGGATTCGTGTGCGCGAGGGAAAGACTGAAGCCT TTGCTGTTAAAGATCATAGAGGAGAATTGTACAAGAAACACTATCCACCTGCTTTGCATGATGAGGTTTGGAGATTGGAC CGGATAGCGAAGGATGGAGCACTACACAAAAAATTGATTCAAGCAAAAATAGTATCTGTAGAAGATTTCCTACGTCTTCT TGTCCGTGAGCCACAGAAGTTAAGAAGTATACTTGGTAGTGGAATGTCCAACAGGATGTGGGAGAATACCGTGGAGCATG CCAAGACATGTGTCTTGGGTGGTAAGCTCTTTGTTTACTACACTGGAGAAACCAATAGCAGTGGCATTGTGTTCAACAAT ATATATGAGCTAAGAGGCCTCATTTCTGAGGGGCAATTCTTCTCTCTGGAATCACTTACTCCAAATCAGAAGATGTCAGT GGATTCCTTGGTGAAGAAAGCATATGATAATTGGGACCAAGTTATAGAATATGATGGAAAAGTTTTAAACTCTCTCACCA ACTCCAAAAAGGGATCAAGATCTGTAGCAGCTCATATAATGCCTCCCAGCAATTTCCTAGAGCAGCAATATACTTCTACA AAGAACAAAGTTTCATCTGTCTCCTCTGAACCAAATCAACATTTGCAAATAGCAAATAACTATTCACCTGATTTGAGTGA TTATTCATTTGGGAGATCTGATAATCAGATGGTAGCAGCAACATCATTCAACTCTCAAATAACAAATAACTACATGTCCG GTGAAAATCCTGAAAATGAAGGTGGTGCTTATTATTCTGGAGATTGGTCTAGGCAGAGAAATGGACAAGGGTTGGAAGAC ATTGTAGCGGAAGAACTCCGGCTTCGGAGTTCCCAGATGTTGGAGAGTGATGATATGCAGAGACTTCTTCACACAATTAA CACAGGAGTCAGCATGTCAAGTAATTTTGGTAATTCTAATGAGGGTTGTTACACCTACAGCCTTCAGTATCAGCCCCAGA TGTATGATTCATTCAGTGAGGATCATGGGAAGCCTTCAGGGAAAGCTGTTGTTGGGTGGTTGAAGCTCAAAGCTGCTTTA AGGTGGGGCATATTCATCAGAAAAAGAGCGGCAGAAAGGAGAGCTCAACTTACCGAGTTGAATTGA
Protein sequence (LotjaGi6g1v0205800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSAFELPKLISCVIVEALKVDSMQRLCSSLEPLLRKIVSEEVERALTKLGHAKLTERSPPPRIEGPGTKSLQLHFRTRM PPHLFTGGKVEGEQGASIHVVLLDPNTGNVVEVGPESVAKLNVVVLEGDFNEEADEDWTKEHFENHEVKEREGKRPLLTG ELQVSLKEGVGTLSDLTFTDNSSWIRSRKFRLGVKVAPGYCEGIRVREGKTEAFAVKDHRGELYKKHYPPALHDEVWRLD RIAKDGALHKKLIQAKIVSVEDFLRLLVREPQKLRSILGSGMSNRMWENTVEHAKTCVLGGKLFVYYTGETNSSGIVFNN IYELRGLISEGQFFSLESLTPNQKMSVDSLVKKAYDNWDQVIEYDGKVLNSLTNSKKGSRSVAAHIMPPSNFLEQQYTST KNKVSSVSSEPNQHLQIANNYSPDLSDYSFGRSDNQMVAATSFNSQITNNYMSGENPENEGGAYYSGDWSRQRNGQGLED IVAEELRLRSSQMLESDDMQRLLHTINTGVSMSSNFGNSNEGCYTYSLQYQPQMYDSFSEDHGKPSGKAVVGWLKLKAAL RWGIFIRKRAAERRAQLTELN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 7 | 579 | 573 | 0.0 | – | |
PANTHER | 7 | 579 | 573 | 0.0 | ||
Pfam | 72 | 363 | 292 | 4.4E-124 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Calmodulin binding | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. |
Expression pattern of LotjaGi6g1v0205800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…