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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012416
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We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.861s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4083120.1
n.a. Cam-binding protein 60-like G [Arabidopsis thaliana] gi|79522180|ref|NP_198044.2| chr1 48350750 48354207 +
2 domain predictions
1 GO term
Lj1g3v4777370.1
n.a. Cam-binding protein 60-like G [Arabidopsis thaliana] gi|79522180|ref|NP_198044.2| chr1 57569496 57573410 -
2 domain predictions
1 GO term
Lj1g3v4777410.1
n.a. Cam-binding protein 60-like G [Arabidopsis thaliana] gi|79522180|ref|NP_198044.2| chr1 57577464 57581652 -
2 domain predictions
1 GO term
Lj2g3v0718100.1
n.a. protein SAR Deficient 1 [Arabidopsis thaliana] gi|186495165|ref|NP_565074.2| chr2 11365883 11370194 -
2 domain predictions
1 GO term
Lj4g3v1539400.1
n.a. Calmodulin binding protein-like isoform 1 [Theobroma cacao] gi|508773358|gb|EOY20614.1| chr4 23137589 23142750 -
2 domain predictions
1 GO term
Lj4g3v2081420.1
n.a. Calmodulin-binding protein [Medicago truncatula] gi|357479739|ref|XP_003610155.1| chr4 28618782 28626209 +
2 domain predictions
1 GO term
Lj4g3v3099570.1
n.a. protein SAR Deficient 1 [Arabidopsis thaliana] gi|186495165|ref|NP_565074.2| chr4 41325505 41330088 +
2 domain predictions
1 GO term
Lj5g3v1513600.1
n.a. Calmodulin-binding protein [Arabidopsis thaliana] gi|30687005|ref|NP_194310.3| chr5 22068160 22068950 -
2 domain predictions
1 GO term
Lj6g3v1078580.1
n.a. Calmodulin-binding protein isoform 1 [Theobroma cacao] gi|508782343|gb|EOY29599.1| chr6 12921332 12926443 +
2 domain predictions
1 GO term
Lj6g3v2082540.1
n.a. Calmodulin-binding protein [Medicago truncatula] gi|357475877|ref|XP_003608224.1| chr6 24558550 24563937 +
2 domain predictions
1 GO term
LotjaGi1g1v0658400.1
n.a. Calmodulin-binding protein; TAIR: AT5G26920.1 Cam-binding protein 60-like G; Swiss-Prot: sp|F4K2R6|CB60G_ARATH Calmodulin-binding protein 60 G; TrEMBL-Plants: tr|A0A072U410|A0A072U410_MEDTR Calmodulin-binding protein; Found in the gene: LotjaGi1g1v0658400 LjG1.1_chr1 121910512 121914233 +
3 domain predictions
1 GO term
LotjaGi1g1v0658400.2
n.a. Calmodulin-binding protein; TAIR: AT5G26920.1 Cam-binding protein 60-like G; Swiss-Prot: sp|F4K2R6|CB60G_ARATH Calmodulin-binding protein 60 G; TrEMBL-Plants: tr|A0A072U410|A0A072U410_MEDTR Calmodulin-binding protein; Found in the gene: LotjaGi1g1v0658400 LjG1.1_chr1 121910650 121914344 +
3 domain predictions
1 GO term
LotjaGi1g1v0747300_LC.1
n.a. Calmodulin-binding protein; TAIR: AT5G26920.1 Cam-binding protein 60-like G; Swiss-Prot: sp|F4K2R6|CB60G_ARATH Calmodulin-binding protein 60 G; TrEMBL-Plants: tr|A0A072UFA8|A0A072UFA8_MEDTR Calmodulin-binding protein; Found in the gene: LotjaGi1g1v0747300_LC LjG1.1_chr1 132005092 132009825 -
3 domain predictions
1 GO term
LotjaGi1g1v0747300_LC.2
n.a. Calmodulin-binding protein; TAIR: AT5G26920.1 Cam-binding protein 60-like G; Swiss-Prot: sp|F4K2R6|CB60G_ARATH Calmodulin-binding protein 60 G; TrEMBL-Plants: tr|A0A072UFA8|A0A072UFA8_MEDTR Calmodulin-binding protein; Found in the gene: LotjaGi1g1v0747300_LC LjG1.1_chr1 132005092 132009825 -
3 domain predictions
1 GO term
LotjaGi1g1v0747300_LC.3
n.a. Calmodulin-binding protein; TAIR: AT5G26920.1 Cam-binding protein 60-like G; Swiss-Prot: sp|F4K2R6|CB60G_ARATH Calmodulin-binding protein 60 G; TrEMBL-Plants: tr|A0A072UFA8|A0A072UFA8_MEDTR Calmodulin-binding protein; Found in the gene: LotjaGi1g1v0747300_LC LjG1.1_chr1 132005122 132009554 -
3 domain predictions
1 GO term
LotjaGi1g1v0747300_LC.4
n.a. Calmodulin-binding protein; TAIR: AT5G26920.1 Cam-binding protein 60-like G; Swiss-Prot: sp|F4K2R6|CB60G_ARATH Calmodulin-binding protein 60 G; TrEMBL-Plants: tr|A0A072UFA8|A0A072UFA8_MEDTR Calmodulin-binding protein; Found in the gene: LotjaGi1g1v0747300_LC LjG1.1_chr1 132005165 132009836 -
3 domain predictions
1 GO term
LotjaGi1g1v0747400.1
n.a. Calmodulin-binding protein; TAIR: AT5G26920.1 Cam-binding protein 60-like G; Swiss-Prot: sp|F4K2R6|CB60G_ARATH Calmodulin-binding protein 60 G; TrEMBL-Plants: tr|I1NBS5|I1NBS5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0747400 LjG1.1_chr1 132013122 132018722 -
3 domain predictions
1 GO term
LotjaGi2g1v0204900.1
n.a. Calmodulin-binding-like protein; TAIR: AT1G73805.1 Calmodulin binding protein-like protein; Swiss-Prot: sp|Q9C9T2|SARD1_ARATH Protein SAR DEFICIENT 1; TrEMBL-Plants: tr|I1L4A9|I1L4A9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0204900 LjG1.1_chr2 64789715 64794006 -
3 domain predictions
1 GO term
LotjaGi4g1v0049800.1
n.a. Calmodulin-binding protein; TAIR: AT5G57580.1 Calmodulin-binding protein; Swiss-Prot: sp|Q9FKL6|CB60B_ARATH Calmodulin-binding protein 60 B; TrEMBL-Plants: tr|A0A151T211|A0A151T211_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0049800 LjG1.1_chr4 6061874 6067240 -
3 domain predictions
1 GO term
LotjaGi4g1v0238200.1
n.a. Calmodulin-binding protein; TAIR: AT5G62570.1 Calmodulin binding protein-like protein; Swiss-Prot: sp|C0SVV6|CB60A_ARATH Calmodulin-binding protein 60 A; TrEMBL-Plants: tr|K7MKS1|K7MKS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0238200 LjG1.1_chr4 55419990 55425017 +
3 domain predictions
1 GO term
LotjaGi4g1v0238200.2
n.a. Calmodulin-binding protein; TAIR: AT5G62570.4 Calmodulin binding protein-like protein; Swiss-Prot: sp|C0SVV6|CB60A_ARATH Calmodulin-binding protein 60 A; TrEMBL-Plants: tr|A0A0B2QB33|A0A0B2QB33_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0238200 LjG1.1_chr4 55420031 55425242 +
3 domain predictions
1 GO term
LotjaGi4g1v0238200.3
n.a. Calmodulin-binding protein; TAIR: AT5G62570.1 Calmodulin binding protein-like protein; Swiss-Prot: sp|C0SVV6|CB60A_ARATH Calmodulin-binding protein 60 A; TrEMBL-Plants: tr|A0A151SN52|A0A151SN52_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0238200 LjG1.1_chr4 55422110 55424715 +
3 domain predictions
1 GO term
LotjaGi4g1v0298600.1
n.a. Calmodulin-binding protein; TAIR: AT5G57580.1 Calmodulin-binding protein; Swiss-Prot: sp|Q9FKL6|CB60B_ARATH Calmodulin-binding protein 60 B; TrEMBL-Plants: tr|V7C9H1|V7C9H1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0298600 LjG1.1_chr4 67252004 67260741 +
3 domain predictions
1 GO term
LotjaGi4g1v0298600.2
n.a. Calmodulin-binding protein; TAIR: AT5G57580.1 Calmodulin-binding protein; Swiss-Prot: sp|Q9FKL6|CB60B_ARATH Calmodulin-binding protein 60 B; TrEMBL-Plants: tr|V7C9H1|V7C9H1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0298600 LjG1.1_chr4 67252674 67258467 +
3 domain predictions
1 GO term
LotjaGi4g1v0298600.3
n.a. Calmodulin-binding protein; TAIR: AT5G57580.1 Calmodulin-binding protein; Swiss-Prot: sp|Q9FKL6|CB60B_ARATH Calmodulin-binding protein 60 B; TrEMBL-Plants: tr|G7JD14|G7JD14_MEDTR Calmodulin-binding protein; Found in the gene: LotjaGi4g1v0298600 LjG1.1_chr4 67253856 67258467 +
3 domain predictions
1 GO term
LotjaGi4g1v0298600.4
n.a. Calmodulin-binding protein; TAIR: AT5G57580.1 Calmodulin-binding protein; Swiss-Prot: sp|Q9FKL6|CB60B_ARATH Calmodulin-binding protein 60 B; TrEMBL-Plants: tr|G7JD14|G7JD14_MEDTR Calmodulin-binding protein; Found in the gene: LotjaGi4g1v0298600 LjG1.1_chr4 67254141 67258467 +
3 domain predictions
1 GO term
LotjaGi4g1v0454100.1
n.a. Calmodulin-binding-like protein; TAIR: AT1G73805.1 Calmodulin binding protein-like protein; Swiss-Prot: sp|Q9C9T2|SARD1_ARATH Protein SAR DEFICIENT 1; TrEMBL-Plants: tr|A0A151T3E7|A0A151T3E7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0454100 LjG1.1_chr4 82596065 82601792 +
3 domain predictions
1 GO term
LotjaGi5g1v0228500_LC.1
n.a. Calmodulin binding protein-like protein; TAIR: AT5G26920.3 Cam-binding protein 60-like G; Swiss-Prot: sp|F4K2R6|CB60G_ARATH Calmodulin-binding protein 60 G; TrEMBL-Plants: tr|A0A0S3SQH9|A0A0S3SQH9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0228500_LC LjG1.1_chr5 53562923 53563857 -
3 domain predictions
1 GO term
LotjaGi6g1v0205800.1
n.a. Calmodulin-binding protein; TAIR: AT2G24300.2 Calmodulin-binding protein; Swiss-Prot: sp|F4IPM3|CB60E_ARATH Calmodulin-binding protein 60 E; TrEMBL-Plants: tr|K7MCM7|K7MCM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0205800 LjG1.1_chr6 50295423 50301180 +
3 domain predictions
1 GO term
LotjaGi6g1v0205800.2
n.a. Calmodulin-binding protein; TAIR: AT2G24300.3 Calmodulin-binding protein; Swiss-Prot: sp|F4IPM3|CB60E_ARATH Calmodulin-binding protein 60 E; TrEMBL-Plants: tr|K7MCM7|K7MCM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0205800 LjG1.1_chr6 50297481 50300518 +
3 domain predictions
1 GO term
LotjaGi6g1v0205800.3
n.a. Calmodulin-binding protein; TAIR: AT2G24300.2 Calmodulin-binding protein; Swiss-Prot: sp|F4IPM3|CB60E_ARATH Calmodulin-binding protein 60 E; TrEMBL-Plants: tr|K7MCM7|K7MCM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0205800 LjG1.1_chr6 50297555 50300518 +
3 domain predictions
1 GO term
LotjaGi6g1v0205800.4
n.a. Calmodulin-binding protein; TAIR: AT2G24300.2 Calmodulin-binding protein; Swiss-Prot: sp|F4IPM3|CB60E_ARATH Calmodulin-binding protein 60 E; TrEMBL-Plants: tr|K7MCM7|K7MCM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0205800 LjG1.1_chr6 50298535 50300518 +
3 domain predictions
1 GO term
LotjaGi6g1v0338700.1
n.a. Calmodulin-binding protein; TAIR: AT5G57580.1 Calmodulin-binding protein; Swiss-Prot: sp|Q9FKL6|CB60B_ARATH Calmodulin-binding protein 60 B; TrEMBL-Plants: tr|A0A072V4D6|A0A072V4D6_MEDTR Calmodulin-binding protein; Found in the gene: LotjaGi6g1v0338700 LjG1.1_chr6 65301115 65307291 +
3 domain predictions
1 GO term