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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0205800 |
| Transcript ID | LotjaGi6g1v0205800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin-binding protein; TAIR: AT2G24300.2 Calmodulin-binding protein; Swiss-Prot: sp|F4IPM3|CB60E_ARATH Calmodulin-binding protein 60 E; TrEMBL-Plants: tr|K7MCM7|K7MCM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0205800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50298535..50300518) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCACCTCACTTGTTCACCGGGGGAAAGGTCGAAGGAGAGCAAGGAGCATCTATCCATGTTGTCTTGCTTGACCCGAA CACAGGTAATGTTGTTGAAGTTGGACCAGAGTCAGTTGCTAAATTGAACGTCGTGGTACTTGAAGGTGACTTCAATGAGG AAGCAGATGAAGATTGGACAAAAGAGCACTTTGAGAACCATGAAGTAAAGGAGCGTGAGGGGAAAAGGCCACTTCTAACT GGAGAGTTGCAAGTTAGCCTAAAGGAAGGGGTAGGAACCTTAAGTGATCTTACTTTCACTGACAATTCTAGCTGGATAAG AAGCAGGAAATTCAGGCTTGGTGTTAAGGTGGCTCCTGGGTATTGTGAGGGGATTCGTGTGCGCGAGGGAAAGACTGAAG CCTTTGCTGTTAAAGATCATAGAGGAGAATGTGAGTTTTCTTTTAGTTAACACTTCATGGTTTTTTCTAATGATTAAATA ATAGTTTGTGATTGATTAACACTTCATGATTGATAATATTTATTTTCTGTAACTTGCAGTGTACAAGAAACACTATCCAC CTGCTTTGCATGATGAGGTTTGGAGATTGGACCGGATAGCGAAGGATGGAGCACTACACAAAAAATTGATTCAAGCAAAA ATAGTATCTGTAGAAGATTTCCTACGTCTTCTTGTCCGTGAGCCACAGAAGTTAAGAAGTGTAAGAATTCACTGCAATTT GGTTATCAAGCTTCAATATCATTCTTCTCTAATCATAGTTTTCTGAATACTCCAATATAAAAACTCATTTTCCACTTTTC CTGCAGATACTTGGTAGTGGAATGTCCAACAGGATGTGGGAGAATACCGTGGAGCATGCCAAGACATGTGTCTTGGGTGG TAAGCTCTTTGTTTACTACACTGGAGAAACCAATAGCAGTGGCATTGTGTTCAACAATATATATGAGCTAAGAGGCCTCA TTTCTGAGGGGCAATTCTTCTCTCTGGAATCACTTACTCCAAATCAGAAGGTCAATTTCCTGCATAAATTAAAAGCACAT AATTCCTAGACCAAATTGATATCATGCTTAGGTTTGATATGTGATCATTGATTAACATGCAATTTTAAACCACTCTTTCT CCCATTAGCGTGTGCGTTTGAGCCCGTTTGGATGCGGACCAAAGAGAACTTATTGGAGCATATCTGGTGTTTTTTTTAGT TGATAAGCTCCAATACATGCTCTCTATCTGATTAGTAGTTACATTAACTTATTGAGAATTTTAATTACAGATGTCAGTGG ATTCCTTGGTGAAGAAAGCATATGATAATTGGGACCAAGTTATAGAATATGATGGAAAAGTTTTAAACTCTCTCACCAAC TCCAAAAAGGGATCAAGATCTGTAGCAGCTCATATAATGCCTCCCAGCAATTTCCTAGAGCAGCAATATACTTCTACAAA GAACAAAGTTTCATCTGTCTCCTCTGAACCAAATCAACATTTGCAAATAGCAAATAACTATTCACCTGATTTGAGTGATT ATTCATTTGGGAGATCTGATAATCAGATGGTAGCAGCAACATCATTCAACTCTCAAATAACAAATAACTACATGTCCGGT GAAAATCCTGAAAATGAAGGTGGTGCTTATTATTCTGGAGATTGGTCTAGGCAGAGAAATGGACAAGGGTTGGAAGACAT TGTAGCGGAAGAACTCCGGCTTCGGAGTTCCCAGATGTTGGAGAGTGATGATATGCAGAGACTTCTTCACACAATTAACA CAGGAGTCAGCATGTCAAGTAATTTTGGTAATTCTAATGAGGGTTGTTACACCTACAGCCTTCAGTATCAGCCCCAGATG TATGATTCATTCAGTGAGGATCATGGGAAGCCTTCAGGGAAAGCTGTTGTTGGGTGGTTGAAGCTCAAAGCTGCTTTAAG GTGGGGCATATTCATCAGAAAAAGAGCGGCAGAAAGGAGAGCTCAACTTACCGAGTTGAATTGA
CDS sequence (LotjaGi6g1v0205800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACCTCACTTGTTCACCGGGGGAAAGGTCGAAGGAGAGCAAGGAGCATCTATCCATGTTGTCTTGCTTGACCCGAA CACAGGTAATGTTGTTGAAGTTGGACCAGAGTCAGTTGCTAAATTGAACGTCGTGGTACTTGAAGGTGACTTCAATGAGG AAGCAGATGAAGATTGGACAAAAGAGCACTTTGAGAACCATGAAGTAAAGGAGCGTGAGGGGAAAAGGCCACTTCTAACT GGAGAGTTGCAAGTTAGCCTAAAGGAAGGGGTAGGAACCTTAAGTGATCTTACTTTCACTGACAATTCTAGCTGGATAAG AAGCAGGAAATTCAGGCTTGGTGTTAAGGTGGCTCCTGGGTATTGTGAGGGGATTCGTGTGCGCGAGGGAAAGACTGAAG CCTTTGCTGTTAAAGATCATAGAGGAGAATTGTACAAGAAACACTATCCACCTGCTTTGCATGATGAGGTTTGGAGATTG GACCGGATAGCGAAGGATGGAGCACTACACAAAAAATTGATTCAAGCAAAAATAGTATCTGTAGAAGATTTCCTACGTCT TCTTGTCCGTGAGCCACAGAAGTTAAGAAGTATACTTGGTAGTGGAATGTCCAACAGGATGTGGGAGAATACCGTGGAGC ATGCCAAGACATGTGTCTTGGGTGGTAAGCTCTTTGTTTACTACACTGGAGAAACCAATAGCAGTGGCATTGTGTTCAAC AATATATATGAGCTAAGAGGCCTCATTTCTGAGGGGCAATTCTTCTCTCTGGAATCACTTACTCCAAATCAGAAGATGTC AGTGGATTCCTTGGTGAAGAAAGCATATGATAATTGGGACCAAGTTATAGAATATGATGGAAAAGTTTTAAACTCTCTCA CCAACTCCAAAAAGGGATCAAGATCTGTAGCAGCTCATATAATGCCTCCCAGCAATTTCCTAGAGCAGCAATATACTTCT ACAAAGAACAAAGTTTCATCTGTCTCCTCTGAACCAAATCAACATTTGCAAATAGCAAATAACTATTCACCTGATTTGAG TGATTATTCATTTGGGAGATCTGATAATCAGATGGTAGCAGCAACATCATTCAACTCTCAAATAACAAATAACTACATGT CCGGTGAAAATCCTGAAAATGAAGGTGGTGCTTATTATTCTGGAGATTGGTCTAGGCAGAGAAATGGACAAGGGTTGGAA GACATTGTAGCGGAAGAACTCCGGCTTCGGAGTTCCCAGATGTTGGAGAGTGATGATATGCAGAGACTTCTTCACACAAT TAACACAGGAGTCAGCATGTCAAGTAATTTTGGTAATTCTAATGAGGGTTGTTACACCTACAGCCTTCAGTATCAGCCCC AGATGTATGATTCATTCAGTGAGGATCATGGGAAGCCTTCAGGGAAAGCTGTTGTTGGGTGGTTGAAGCTCAAAGCTGCT TTAAGGTGGGGCATATTCATCAGAAAAAGAGCGGCAGAAAGGAGAGCTCAACTTACCGAGTTGAATTGA
Protein sequence (LotjaGi6g1v0205800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPHLFTGGKVEGEQGASIHVVLLDPNTGNVVEVGPESVAKLNVVVLEGDFNEEADEDWTKEHFENHEVKEREGKRPLLT GELQVSLKEGVGTLSDLTFTDNSSWIRSRKFRLGVKVAPGYCEGIRVREGKTEAFAVKDHRGELYKKHYPPALHDEVWRL DRIAKDGALHKKLIQAKIVSVEDFLRLLVREPQKLRSILGSGMSNRMWENTVEHAKTCVLGGKLFVYYTGETNSSGIVFN NIYELRGLISEGQFFSLESLTPNQKMSVDSLVKKAYDNWDQVIEYDGKVLNSLTNSKKGSRSVAAHIMPPSNFLEQQYTS TKNKVSSVSSEPNQHLQIANNYSPDLSDYSFGRSDNQMVAATSFNSQITNNYMSGENPENEGGAYYSGDWSRQRNGQGLE DIVAEELRLRSSQMLESDDMQRLLHTINTGVSMSSNFGNSNEGCYTYSLQYQPQMYDSFSEDHGKPSGKAVVGWLKLKAA LRWGIFIRKRAAERRAQLTELN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 500 | 500 | 1.0E-267 | – | |
| PANTHER | 1 | 500 | 500 | 1.0E-267 | ||
| Pfam | 2 | 284 | 283 | 6.9E-121 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calmodulin binding | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. |
Expression pattern of LotjaGi6g1v0205800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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